mRNA_H-canaliculatus_F_contig1275.2290.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1275.2290.1
Unique NamemRNA_H-canaliculatus_F_contig1275.2290.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1275.2290.1 vs. uniprot
Match: D8LU79_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU79_ECTSI)

HSP 1 Score: 459 bits (1182), Expect = 4.440e-159
Identity = 222/240 (92.50%), Postives = 233/240 (97.08%), Query Frame = 3
Query:  717 MAEAEAVSAPSPFKSDKGRKRWFPLESNPDVMNKYIAKMGWPAEAYRFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKYREAEEARMRDSTETPNPELYFMKQTVGNACGTVGLLHCALNASVSKGISLDKDCFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAREEKINTHFVCLTEVDGVLYELDGRKEGPVPHGSTSPATLLQDACGVVKQFMDRDPGELR 1436
            MAEAEA+SAPSPFKSDKGRKRWFPLESNPDVMNKYIAKMGWPA AY FTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEK+RE E AR+R+STE+ NP+LYFMKQTVGNACGTVGLLHCALNAS+SKGI+LDK+CFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQ+GQSDQIAREEKINTHFVCLTE+DG LYELDGRKEGPVPHGSTSPATLLQDAC VVKQFMDRDPGELR
Sbjct:    1 MAEAEALSAPSPFKSDKGRKRWFPLESNPDVMNKYIAKMGWPAGAYSFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKHREEEAARVRESTESLNPKLYFMKQTVGNACGTVGLLHCALNASISKGITLDKECFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQEGQSDQIAREEKINTHFVCLTEMDGTLYELDGRKEGPVPHGSTSPATLLQDACAVVKQFMDRDPGELR 240          
BLAST of mRNA_H-canaliculatus_F_contig1275.2290.1 vs. uniprot
Match: A0A1V9YLF7_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YLF7_9STRA)

HSP 1 Score: 265 bits (676), Expect = 9.450e-83
Identity = 134/223 (60.09%), Postives = 166/223 (74.44%), Query Frame = 3
Query:  774 KRWFPLESNPDVMNKYIAKMGWPAE-AYRFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKYREAEEARMRDSTETPNPELYFMKQTVGNACGTVGLLHCALNASVSKGISLDKDCFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAR-EEKINTHFVCLTEVDGVLYELDGRKEGPVPHGSTSPATLLQDACGVVKQFMDRDPGELR 1436
            KRWFPLESNP VMN+YI +MG PA+ A+ F DVYSTEDWAL MVP+PVL V+MLFPIK  TE Y +AE  R+  + +  +P +Y+MKQTVGNACGTVG+LH   NA   + ++     FL  F+ KTR  TPA+IA+ L ++DELEE H  AAQ+GQSDQ+   ++ INTHFVCL+ VDG LYELDGRK  P+ HG +S ATLL+DAC VV+ FM RD GE+R
Sbjct:   10 KRWFPLESNPAVMNEYIKRMGLPADSAFEFCDVYSTEDWALDMVPRPVLAVIMLFPIKAHTEAYAKAEHERIEKNGQAVSPNVYYMKQTVGNACGTVGILHALGNAG--EHMTFTHGSFLQSFFAKTRDKTPAEIAEILEEDDELEETHASAAQEGQSDQLEHIDDPINTHFVCLSVVDGHLYELDGRKAFPINHGPSSSATLLEDACRVVRDFMQRDEGEVR 230          
BLAST of mRNA_H-canaliculatus_F_contig1275.2290.1 vs. uniprot
Match: A0A3F2RNT3_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RNT3_9STRA)

HSP 1 Score: 250 bits (639), Expect = 3.120e-77
Identity = 121/222 (54.50%), Postives = 159/222 (71.62%), Query Frame = 3
Query:  774 KRWFPLESNPDVMNKYIAKMGWPAEAYRFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKYREAEEARMRDSTETPNPELYFMKQTVGNACGTVGLLHCALNASVSKGISLDKDCFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAR-EEKINTHFVCLTEVDGVLYELDGRKEGPVPHGSTSPATLLQDACGVVKQFMDRDPGELR 1436
            KRWFPLESNPDVMN Y+ KMG+P + + F DV STE+WAL MVP PV+ V+MLFPIK  TE+  + E  R+    +T +P +Y+M+QTVGNACGTVG+LH   N  +   + L    +L +F+ KT+  TP +IAQ L ++DELEE H  AA+ GQS+Q+   ++ INTHFVC + VDG LYELDGRK+ P+ HG +SP T+L DAC  +K+FM RD GE+R
Sbjct:    9 KRWFPLESNPDVMNNYVEKMGFPTDQFSFCDVLSTEEWALGMVPSPVVAVIMLFPIKPHTEEAAKQEAVRIEREGQTVSPNVYYMRQTVGNACGTVGILHAIGN--MRHLVQLTPGSYLDKFFNKTKTKTPKEIAQYLEEDDELEETHGSAAEAGQSEQLETVDDPINTHFVCFSHVDGHLYELDGRKKHPINHGPSSPTTVLPDACAEIKKFMARDEGEMR 228          
BLAST of mRNA_H-canaliculatus_F_contig1275.2290.1 vs. uniprot
Match: H3H379_PHYRM (Ubiquitin carboxyl-terminal hydrolase n=15 Tax=Phytophthora TaxID=4783 RepID=H3H379_PHYRM)

HSP 1 Score: 249 bits (636), Expect = 8.770e-77
Identity = 125/229 (54.59%), Postives = 163/229 (71.18%), Query Frame = 3
Query:  759 SDKGRK--RWFPLESNPDVMNKYIAKMGWPAEAYRFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKYREAEEARMRDSTETPNPELYFMKQTVGNACGTVGLLHCALNASVSKGISLDKDCFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAR-EEKINTHFVCLTEVDGVLYELDGRKEGPVPHGSTSPATLLQDACGVVKQFMDRDPGELR 1436
            SD+G K  RWFPLESNP+VMN Y+ KMG+P  A+ F DV STE+WALAMVP PV+ V+MLFPIK  TE+  + E  R+    +  +P +Y+M+QTVGNACGTVG+LH   N  +   + L    +L +F+  T+  TP +IAQ L ++DELEE H  AA+ GQS+Q+   ++ INTHFVC + VDG LYELDGRK+ P+ HG +SP TLLQDAC  +K+FM RD GE+R
Sbjct:    2 SDEGNKHKRWFPLESNPEVMNAYVEKMGFPTTAFSFCDVLSTEEWALAMVPSPVVAVIMLFPIKPHTEEADKQEAKRIEKDGQIMSPNVYYMRQTVGNACGTVGILHAIGN--MRHLVRLTPGSYLDKFFNTTKTKTPEEIAQYLEEDDELEETHGSAAEAGQSEQLESVDDPINTHFVCFSCVDGTLYELDGRKKRPINHGPSSPDTLLQDACQAIKKFMARDEGEMR 228          
BLAST of mRNA_H-canaliculatus_F_contig1275.2290.1 vs. uniprot
Match: A0A7S1C7C4_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7C4_9STRA)

HSP 1 Score: 249 bits (637), Expect = 3.220e-76
Identity = 124/240 (51.67%), Postives = 165/240 (68.75%), Query Frame = 3
Query:  726 AEAVSAPSPFKSDKGRKRWFPLESNPDVMNKYIAKMGWPAEAYRFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKYREAEEARMRDSTETPNPELYFMKQTVGNACGTVGLLHCALNASVSKG---ISLDKDCFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAREEKINTHFVCLTEVDGVLYELDGRKEGPVPHGSTSPATLLQDACGVVKQFMDRDPGELR 1436
            ++   AP+     K +KRWFPLESNP VMNKY+ K+G+P   Y   +V ST+DWAL MVP+PV+GVVMLFP+K+++EK+R  E AR+    +    E+Y+ KQTVGNACGT+GLLH A NA+   G   + L +D +L+RF  +T+ +TP + A AL D+DELEE H  AA +GQ+     +E +N HFV  + V G L ELDGRK+ P+ HG T+P TLL DAC VV+ FM RDP E+R
Sbjct:   38 SKEAEAPAEGGKKKRKKRWFPLESNPHVMNKYLEKLGFPTMMYHTVEVMSTDDWALDMVPKPVIGVVMLFPVKDASEKHRHEEAARIAAEGQDLPAEVYYTKQTVGNACGTIGLLHVAANATSFAGSDLVPLGEDSWLYRFLARTKDMTPDERAAALEDDDELEESHGAAASEGQTTVPDIDESVNAHFVAFSNVKGKLVELDGRKKSPIVHGDTTPETLLADACKVVRDFMARDPDEVR 277          
BLAST of mRNA_H-canaliculatus_F_contig1275.2290.1 vs. uniprot
Match: A0A067C1R0_SAPPC (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C1R0_SAPPC)

HSP 1 Score: 247 bits (630), Expect = 9.310e-76
Identity = 128/227 (56.39%), Postives = 157/227 (69.16%), Query Frame = 3
Query:  762 DKGRKRWFPLESNPDVMNKYIAKMGWPAE-AYRFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKYREAEEARMRDSTETPNPELYFMKQTVGNACGTVGLLHCALNASVSKGISLDKDCFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAR-EEKINTHFVCLTEVDGVLYELDGRKEGPVPHGSTSPATLLQDACGVVKQFMDRDPGELR 1436
            D   KRWFPLESNP VMN+Y  +MG PA+ A+ F DVYSTEDWAL MV +PVL V+MLFPIK  TE Y + E  R+  S +  +P +Y+MKQTVGNACGTVG+LH   N  V   ++     FL  F+EKTR  TP +IA  L  +DELEE H  AAQ+GQS+Q+   ++ INTHFVC   VD  LYELDGRK  P+ HG +S  TLL+DAC V++ FM RD GE+R
Sbjct:    6 DAKAKRWFPLESNPQVMNEYAKRMGLPADSAFEFCDVYSTEDWALDMVLRPVLAVIMLFPIKTHTEAYAKEERQRIEASGQVVSPNVYYMKQTVGNACGTVGILHALGN--VGDYVAYQPGSFLQTFFEKTRAKTPEEIAVILEGDDELEETHASAAQEGQSEQLEHVDDPINTHFVCFCTVDDHLYELDGRKAFPINHGPSSRETLLEDACRVIQSFMQRDDGEVR 230          
BLAST of mRNA_H-canaliculatus_F_contig1275.2290.1 vs. uniprot
Match: A0A485KZ13_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZ13_9STRA)

HSP 1 Score: 246 bits (627), Expect = 2.220e-75
Identity = 127/229 (55.46%), Postives = 166/229 (72.49%), Query Frame = 3
Query:  759 SDKGR-KRWFPLESNPDVMNKYIAKMGWPAEA-YRFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKYREAEEARMRDSTETPNPELYFMKQTVGNACGTVGLLHCALNASVSKGISLDKDCFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAR-EEKINTHFVCLTEVDGVLYELDGRKEGPVPHGSTSPATLLQDACGVVKQFMDRDPGELR 1436
            +++GR KRWFPLESNP VMN+YI +MG P ++ + F DVYSTEDWA+ MV +PVL VVMLFPIK+++E Y + E AR+ +  +  +  +Y+MKQTVGNACGTVG+LH   NA     +    D FL  F+ KT+  TP ++A  L  +DELEE H  AAQ GQS+Q+   ++ INTHFVC + VDG LYELDGRK+ P+ HG +S  TLL+DACGV++QFM RD GE+R
Sbjct:    7 NERGRNKRWFPLESNPHVMNEYIKRMGIPDDSDFAFCDVYSTEDWAMDMVLRPVLAVVMLFPIKDASESYAKEERARIENEGQVVSDNVYYMKQTVGNACGTVGILHALGNAR--HVLPPRPDSFLATFFAKTQDKTPEEMAAILEADDELEETHASAAQAGQSEQLEHVDDPINTHFVCFSAVDGHLYELDGRKQFPINHGPSSSDTLLEDACGVIQQFMARDKGEVR 233          
BLAST of mRNA_H-canaliculatus_F_contig1275.2290.1 vs. uniprot
Match: M4BQF5_HYAAE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BQF5_HYAAE)

HSP 1 Score: 244 bits (622), Expect = 1.060e-74
Identity = 122/228 (53.51%), Postives = 163/228 (71.49%), Query Frame = 3
Query:  759 SDKG-RKRWFPLESNPDVMNKYIAKMGWPAEAYRFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKYREAEEARMRDSTETPNPELYFMKQTVGNACGTVGLLHCALNASVSKGISLDKDCFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAR-EEKINTHFVCLTEVDGVLYELDGRKEGPVPHGSTSPATLLQDACGVVKQFMDRDPGELR 1436
            SD+G RKRWFPLESNPDVMN Y+ KMG+P   + F DV STE+WAL MV  P++ V+MLFPIK  TE+  + E AR+    +T +P++Y+M+QTVGNACGTVG+LH   N  +   + L    +L +F+  T+  TP +IAQ L ++DELE+ H  AA+ GQS+Q+   ++ INTHFVC + VDG LYELDGRK+ P+ HG +S  T+LQDAC V+K+FM RD  E+R
Sbjct:    2 SDEGKRKRWFPLESNPDVMNAYVKKMGFPTSQFSFCDVLSTEEWALGMVSTPIVAVLMLFPIKPHTEEADKQEAARIEKEGQTVSPDVYYMRQTVGNACGTVGILHAVGN--MRHLVQLAPGSYLDKFFNTTKTKTPQEIAQYLEEDDELEKTHGGAAEAGQSEQLQSVDDPINTHFVCFSCVDGNLYELDGRKKSPINHGPSSQETILQDACKVIKKFMARDENEMR 227          
BLAST of mRNA_H-canaliculatus_F_contig1275.2290.1 vs. uniprot
Match: A0A0G4F8F1_VITBC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F8F1_VITBC)

HSP 1 Score: 243 bits (621), Expect = 1.400e-74
Identity = 122/224 (54.46%), Postives = 159/224 (70.98%), Query Frame = 3
Query:  765 KGRKRWFPLESNPDVMNKYIAKMGWPAEAYRFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKYREAEEARMRDSTETPNPELYFMKQTVGNACGTVGLLHCALNASVSKGISLDKDCFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAREEKINTHFVCLTEVDGVLYELDGRKEGPVPHGSTSPATLLQDACGVVKQFMDRDPGELR 1436
            K  K+W PLE+NPDVM +YI K+G P    +  DV +TEDWAL MVP+PV G+++LFPIK++TEK+RE E AR++ + +T +P++YF KQTVGNACGTVG+LH  LN    +   L  + F ++F  KT  L+P Q A+AL ++DE+EE H E  QQGQS    R+ ++ THF  L E+DG LYELDGRKE P+ HG +SP T L+DA  V  QFM RDPGELR
Sbjct:    7 KSHKKWLPLEANPDVMTEYIMKLGGPP--VQCVDVLTTEDWALDMVPKPVYGLILLFPIKDTTEKHREEEAARVKANGQTVSPKVYFTKQTVGNACGTVGILHTVLNIRDKQ--PLGAEGFFNKFLTKTMPLSPDQRAEALEEDDEIEEAHTEVEQQGQSRVPTRDAQVETHFAALIEMDGCLYELDGRKEFPINHGPSSPGTFLKDAVRVAGQFMARDPGELR 226          
BLAST of mRNA_H-canaliculatus_F_contig1275.2290.1 vs. uniprot
Match: A0A8K1FQY3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQY3_PYTOL)

HSP 1 Score: 242 bits (618), Expect = 4.620e-74
Identity = 118/224 (52.68%), Postives = 162/224 (72.32%), Query Frame = 3
Query:  768 GRKRWFPLESNPDVMNKYIAKMGWPAEAYRFTDVYSTEDWALAMVPQPVLGVVMLFPIKESTEKYREAEEARMRDSTETPNPELYFMKQTVGNACGTVGLLHCALNASVSKGISLDKDCFLHRFWEKTRQLTPAQIAQALHDEDELEEVHEEAAQQGQSDQIAR-EEKINTHFVCLTEVDGVLYELDGRKEGPVPHGSTSPATLLQDACGVVKQFMDRDPGELR 1436
            G KRWFPLESNP VMN Y+ K+G+P   + F DV STEDWAL MVP+PV+GV+MLFPIK+ TE + + E AR+    +  +P +Y+MKQTVGNACGT+GLLH   N  + + +++    +L + + +T   TP +IA  L ++DELE+ HE AAQ+GQS+Q+   ++ ++THF+C + VDG LYELDGRK+ P+ HG +S  TLL DAC V++QFM RD GE+R
Sbjct:    7 GGKRWFPLESNPAVMNTYVEKLGFPTSDFSFCDVLSTEDWALDMVPKPVVGVLMLFPIKKHTEAFAKEEAARIEKDGQVVSPHVYYMKQTVGNACGTIGLLHAIGN--MRQHVTIPATSYLGKLFNQTVGQTPDKIADYLEEDDELEDTHESAAQEGQSEQVEDVDDPVDTHFICFSCVDGHLYELDGRKKFPINHGPSSQETLLSDACKVIQQFMVRDEGEVR 228          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1275.2290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU79_ECTSI4.440e-15992.50Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ecto... [more]
A0A1V9YLF7_9STRA9.450e-8360.09Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Achl... [more]
A0A3F2RNT3_9STRA3.120e-7754.50Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Phyt... [more]
H3H379_PHYRM8.770e-7754.59Ubiquitin carboxyl-terminal hydrolase n=15 Tax=Phy... [more]
A0A7S1C7C4_9STRA3.220e-7651.67Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Bico... [more]
A0A067C1R0_SAPPC9.310e-7656.39Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Sapr... [more]
A0A485KZ13_9STRA2.220e-7555.46Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Apha... [more]
M4BQF5_HYAAE1.060e-7453.51Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Hyal... [more]
A0A0G4F8F1_VITBC1.400e-7454.46Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Vitr... [more]
A0A8K1FQY3_PYTOL4.620e-7452.68Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1275contigH-canaliculatus_F_contig1275:41..6763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score460.3
Seed ortholog evalue5.5e-127
Seed eggNOG ortholog2880.D8LU79
Preferred nameUCHL3
KEGG rclassRC00002
KEGG koko:K05609,ko:K12584
KEGG ReactionR04368
KEGG Pathwayko03018,map03018
GOsGO:0000338,GO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010992,GO:0016579,GO:0016787,GO:0019538,GO:0019725,GO:0019783,GO:0019784,GO:0036211,GO:0036459,GO:0042592,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0065007,GO:0065008,GO:0070011,GO:0070646,GO:0070647,GO:0071704,GO:0101005,GO:0140096,GO:1901564
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsKOG1415@1,KOG1415@2759
EC3.4.19.12,3.6.1.59
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03019,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptidase C12, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-14_003970.1
Exons7
Model size1436
Cds size720
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1275.2290.1prot_H-canaliculatus_F_contig1275.2290.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1275 757..6763 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.3502712-UTR-H-canaliculatus_F_contig1275:40..7561622928996.3502712-UTR-H-canaliculatus_F_contig1275:40..756Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1275 41..756 +
1696845643.2825894-UTR-H-canaliculatus_F_contig1275:40..7561696845643.2825894-UTR-H-canaliculatus_F_contig1275:40..756Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1275 41..756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.3671222-CDS-H-canaliculatus_F_contig1275:756..8321622928996.3671222-CDS-H-canaliculatus_F_contig1275:756..832Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1275 757..832 +
1696845643.2955709-CDS-H-canaliculatus_F_contig1275:756..8321696845643.2955709-CDS-H-canaliculatus_F_contig1275:756..832Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1275 757..832 +
1622928996.3810263-CDS-H-canaliculatus_F_contig1275:1356..14201622928996.3810263-CDS-H-canaliculatus_F_contig1275:1356..1420Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1275 1357..1420 +
1696845643.3053071-CDS-H-canaliculatus_F_contig1275:1356..14201696845643.3053071-CDS-H-canaliculatus_F_contig1275:1356..1420Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1275 1357..1420 +
1622928996.3918839-CDS-H-canaliculatus_F_contig1275:2176..23471622928996.3918839-CDS-H-canaliculatus_F_contig1275:2176..2347Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1275 2177..2347 +
1696845643.3153017-CDS-H-canaliculatus_F_contig1275:2176..23471696845643.3153017-CDS-H-canaliculatus_F_contig1275:2176..2347Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1275 2177..2347 +
1622928996.4085886-CDS-H-canaliculatus_F_contig1275:3174..32601622928996.4085886-CDS-H-canaliculatus_F_contig1275:3174..3260Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1275 3175..3260 +
1696845643.3250804-CDS-H-canaliculatus_F_contig1275:3174..32601696845643.3250804-CDS-H-canaliculatus_F_contig1275:3174..3260Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1275 3175..3260 +
1622928996.4267616-CDS-H-canaliculatus_F_contig1275:3905..39851622928996.4267616-CDS-H-canaliculatus_F_contig1275:3905..3985Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1275 3906..3985 +
1696845643.3333774-CDS-H-canaliculatus_F_contig1275:3905..39851696845643.3333774-CDS-H-canaliculatus_F_contig1275:3905..3985Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1275 3906..3985 +
1622928996.438202-CDS-H-canaliculatus_F_contig1275:4991..50921622928996.438202-CDS-H-canaliculatus_F_contig1275:4991..5092Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1275 4992..5092 +
1696845643.3417115-CDS-H-canaliculatus_F_contig1275:4991..50921696845643.3417115-CDS-H-canaliculatus_F_contig1275:4991..5092Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1275 4992..5092 +
1622928996.4522836-CDS-H-canaliculatus_F_contig1275:6621..67631622928996.4522836-CDS-H-canaliculatus_F_contig1275:6621..6763Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1275 6622..6763 +
1696845643.3520482-CDS-H-canaliculatus_F_contig1275:6621..67631696845643.3520482-CDS-H-canaliculatus_F_contig1275:6621..6763Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1275 6622..6763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1275.2290.1

>prot_H-canaliculatus_F_contig1275.2290.1 ID=prot_H-canaliculatus_F_contig1275.2290.1|Name=mRNA_H-canaliculatus_F_contig1275.2290.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=240bp
MAEAEAVSAPSPFKSDKGRKRWFPLESNPDVMNKYIAKMGWPAEAYRFTD
VYSTEDWALAMVPQPVLGVVMLFPIKESTEKYREAEEARMRDSTETPNPE
LYFMKQTVGNACGTVGLLHCALNASVSKGISLDKDCFLHRFWEKTRQLTP
AQIAQALHDEDELEEVHEEAAQQGQSDQIAREEKINTHFVCLTEVDGVLY
ELDGRKEGPVPHGSTSPATLLQDACGVVKQFMDRDPGELR
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mRNA from alignment at H-canaliculatus_F_contig1275:41..6763+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1275.2290.1 ID=mRNA_H-canaliculatus_F_contig1275.2290.1|Name=mRNA_H-canaliculatus_F_contig1275.2290.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6723bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1275:41..6763+ (Hapterophycus canaliculatus Oshoro5f female)
TTCGATCTCGACCTTAGAGGAGTTTGGTAGTGAGCGTCCTTTCTCGTCAT CCACGTGCCCTCTTGCAACGAAGGGAGTGGGGTTCCGTGCAACCAGATTT TCAAACAAACCTCAAGACTTCCTTCACACAACGGCATCCCCTCCGACATC GGATTGTGGGACAATTCGGAACCTCGGTCAAAGCAGCAATGTATGTGAGA GCAGTGTGGCATAAACAGATGGCACTCGTGAAAGCGTCGGATTGCCGTAA TTCGAAGCATATCACAATGGATGTGATGAGCGCAATCCAACCGGAATCTT GCGAGCTTCGTATCTGATCTTGATTAGAGTTTATTTATTTTAATTTTACT AACGAAAAGAACATTTGACTATTCTCCACCCACAAGAAATTGGAACAAAG ATCAGAAACACAATGCATTCAGTAGTTTAGAAATACATCATTGGAGACGC TGTGTAGCGGTCGCATCCTGCACGTATAACGAATTGAATGCATCTCCCGA ATCCCATCTCCGTGTTCTTGAAACGGGGTTGATCTGCCCTCTTGGGTGAA TAAAGGAGTTGGCAACCCTGTAGATCATGCAATCGCATGCATGTGGAAAC CCTAATCGATATGATCTGCCGATTTGCCGGAGCCTCCCTCGCCTCTCCCG TGTTCCGCGTAGCTGCGTCCACGTTATTGTCTCTTTTACTGCACCTGGAT TCAGCGGCTTTGCATCATGGCCGAGGCGGAAGCTGTGTCTGCGCCCTCCC CTTTCAAATCTGACAAAGGGAGGAAGAGATGGTTCCCGCTCGGTGAGATA CGTCTTCCTGTATTTCTGTTGTTGTGCAAGACTGTTTTGTGAAGTAGAAT CAGAGTTCATCCTCACGTGTGCGCTCCGGTGGTCTAGCAGCCGGCCGGCT GCACGACTGCTCGCGGCTGCCTACGCAGCATCTACCCCATATGATCAAAA TCCTTGTAAATGTACGCGCCAAAGGCTCGTTAATCCGCCTCTTTAAGGAC GCTATGATTTTACTCCCTTCAACTGACTCCTTGAGATACGTTTTCGAGTT TCAGATGGACTTCTTACTGAAGAGAAACACATGATGCCTCAAGATCCCAC CACGACCACTGGGGTGTTTCATGGCTGCTAGCTCTGTCCTGCGACGCTGC CGTTCGTTCTAGAGAGCGAACGCGTTCCATCCTACTTCCAGCGCAGACGT GATGTACAATCGTCCAGCGCCATGGCTGCCACATGTGTCTTTAGTGGAAA CATCTGTATCTTTGATCTCCCTGTTTTTTTCGTTGTTTCCTCCGCGCCCT CGGCTCGTCCTTGCAGAGTCTAATCCGGACGTTATGAACAAGTACATCGC AAAGATGGGATGGCCGGCAGAAGCATACCGGTGGGTCGGCGGTAGCAAAA CCAAGAAACCGCTCGAACCATGGCGCCTATACGTCCGTGGGTGGCTGGGA TGACGATTAAGTAGTTTGAATCGGCTCCAGGCGGGGTTTCTAGACCAAGG GGGCCGAGCTGGCTCTATTTGAAGAGAGTGACAGACCAGAGATGTTAGAT CTGGGGGGCAGCCTAGTCTAGTACTCTGTCGCGCTGGGAGCCCGACGGCA ACGCGGAAGCCGAGCAATAATTGAGATACCGCATCCTCCCAGCAATTGGC GGTACATCTGAATTGTCATCGTACAGCCTTTACACCTAGGGCTCAAACCA GTGGAAGCCGTTCGGAAGCAGCCCACCGGATGAATGCTGCCGTAGTGCCC GTGTCCCGCTCCATGAAGGAAATCTGCCGGCAGGCTACCGACTGTTTGTA ACTTGGCGGTTTGTGTGAAAAATCAAAGGCCATCACACCAATAAAGAACC GAAATCACGATCCATACCAGGCGTGCCTGATGTTTTTTACCGAACTTGGT CTCTCCTAGGACGACGCCAACGCGCGACCAAACGTGCAGCTGACCCTCCA CAGAAATCGCTGGGCATTGGCTACGAATCCGCTGGTTTGTTAGGCACGAC GGTCCAGGCGCACAGCAGCGGTCGATTTTGAGTCCTTGAGGACTGCTATG GTGCAATACCCCCCACAACGTCGCATCGTCGAATCAACCAAACCATCTGA TGGCGACCGCTGTTGTTGGCGCGGTCGGTCTCTCAGGTTCACGGACGTGT ACAGCACGGAGGATTGGGCGCTCGCGATGGTACCTCAGCCAGTCCTTGGC GTTGTGATGCTCTTTCCCATTAAGGAGTCCACGGAGAAGTACCGGGAGGC GGAGGAGGCGCGGATGCGGGACTCCACAGAGACGCCCAACCCCGAGCTGT ACTTCATGTGAGCAGCGGCCCTCCCAGCTCATTCTCTTAGTAGCCAAAAC TGTTGATGGGAGGCAGATTGCAGGTGCCTCATCCTTTTGCTTGAAGAGGG TAGGATGCACAGCGATGAGCCACTCCTCTTGGCCAGCTCTCTTTCTGGCC CACCTCTCGGTGCCGCATTGACTGACGCTGTCCACGGACAGATAGGCACG CCCGGCTGCCGTCGCCGCTCGTGCGTTGATGCTGCTGCCGCCGCCCCCGC CGCCGCGGCCACCGAGGCGCTTGCTTGCACCTGGCGAAATGTATGCTTTT CTGTGTGGTCAGAGCGTGGCTCGCGTTGATCCCTATGTCGAATACTTTAA CCCCGGACAGCTTTCGTCCGGAACGACGGTGGGCGTGCAGGTTGACTTCA TCCCGTAAACTCCGAGGCCACGTCGGTACTCGTCGTGAAAGCTGCTTAAA CACGCTGTTTTTGCTTCTCCTCCTGGTGGCGTCGTGTCCGTTTCTTGCGG CAGATCTGGGGAGCTAGGAGCTACAGTAGTAGCGCGCGACCCAGAACAAA AAAGTGATGATATTCTCATTTAGGATTCCGTCCCCGACTTGAAAGAGACC CTTGTTTGTCTTTCTATGGACACGCGGACGAACACACCATTCGCTCGACG CGCTTAAAAACTGTGGAAGCTGACGTTCGCCTAGAATGCCGCAAACTGAC CACCCTCCCATGCTCTGTGGCGACTTTGCTTCGTGCGGGGGACGGATTCT AAACCGCCCGCCGCCCCCCCCTCCTCCACTTGGCGTCCTTCACCACAACA TGGGGGGGCGGCGGGGGGGGAACGATCATCTCAGGAAGCAAACGGTCGGC AACGCTTGCGGAACGGTCGGGTTGCTACACTGCGCGCTAAATGCGTCCGT TTCCAAAGGGATTTCGCTTGGTGAGTGCCCCCGTGGCGGTCCATCCAGTC ATTAATAGCCGCCCGAGACGCCTGCCGCTCTACCCAAAGAGAGGCATCTT GATACTTGCTTCCTCGTCGCCATTGCTCGGTATTTTAATGCTTTGGTGAA TCATAAGCACCGCATCGCGGGTGTTGGCGTGTAAAAGCCCATACCATCGC GTGGATGTAGTCCAGGTAGTCCAGGTCTGTTGGAGACGTCGAACGTGTCT ACACTAGCACGTGGTACTCTCGGGGGGAAGGTAGGCGAAGGTGAAGGAGA CCAAGAACGCGCAGGTCGCGGTCGGTCAAGTGTCGGGACGTCGCTTTGGG GGGGAGAAAGCGTTCTGCGGCTCTCTGAGTTGAGGAGCGGTCTACCGAGG CTTTTGAAGAGCTACGGGGGGCAAGTGCATGTACGACAGCATGAGGGCGA CGGGCAACCGCCGACTAACCCTCGACCAAGAAGATGCTTGTTGAGAAAAG AGCCGTTGGGAGCTCACGCACAGTACGCGGGTCAGGTCGCTCTTGCTTCG AAAGTACAGGAACCGACAAAGCTGTTGCCGTCGTACGACACCCCCCCCCC AACGAGAACTTATTATCTCGCTCTGCTCTCGTTCAACGCCTTCTCCCGAA CTCGCCCTCTCACAGACAAAGATTGCTTCTTGCACCGGTTTTGGGAGAAG ACTAGACAGCTCACACCGGCGCAAATCGCGCAGGCTCTCCATGATGTGAG AGCTGAACCGATCACCTAGCCGAGGGACAGTGTCTGGCGTCTCGTGGGGG ATATCCTAGCGTTCGTCGACCAATGATTATGTGTACCAAGGCCTGGCGGA AAGGCTGGGAAAATGCGCGGAGCTGCCCGTGTAACCTGTCTTGCCATCGC GTCTTGCTGAGGATCGGTTTGAGAAGTCTTCGAGTAGGCGTTATTAGCAC AGGCACCTTTTTCAGCGCAGAAGCGGCCTCGATGCAGCATCACGGGAATG TTGCCAAACGAGCGCCCGAGCGTCGCCCTTCGGCTTGCTTGCTGTCCAAA GTCGGCTTCGCTCTTGCCCTCCCAATTTGTCCTTGTATCATCAGGGCGTG TAGCGCGTATGGAACAGCATGTTGCTGTCGTTCTGTCTCGTGGGATTGTC CGGCCGCCTGCGTGTTCGATTTTCGATTTCGTAAGTGAATTTTGTGTACG TATCACCCTCGACCATGCCACCCGGCTGAAATGCATGTCAGAGTCGACCG GATGATTGGACGACAACGTGCGGGGGGCGTCAACAGGGTTAGGACGTGGG AGGCTGGTCGGACGTTTCCAGCCTCGGGGTTGGAAAGATTGACGAAGGAT AAAATCGTGCCTACTTGCAATCAATTTGCTTTTCCTGCCGAAGATGTGCG TGTATTCGTTACCATGGGCGCCCCCTTGTTCTTGCTTGCATCAGTCCCCC CGCGTATGAACGCATCTCCAATGTTCGCTTTAACATCTCTGGTCAGCAGC TCCGTTCAGTCAACTTTTTTGTTGGACAGCAGAGACGCCTCATTTGTCGT GGGACTGCTTGGGGCTGCTTGTTAATGGGCGTCTGTGTGATATTATATGT TATCAATTGAACAAAATATTGCTGTTTTGTTCTCTGTCTTTTTCTTATTC TTATTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT CCGCCTCCTCCTCCTCCTCCTCATCTTCCTGCTCTTCTTCGTGGTGCGAA GGAGGATGAGCTCGAGGAGGTCCACGAGGAGGCTGCCCAACAGGGCCAGA GCGATCAGATCGCCCGCGAGGAAAAAATCAACACTCATTTCGTGTGCCTC ACGTGAGTCGCCCTCCCGGGCCAGGCTCGGGGTGCCATGCGCGTGGGTCT CGACGCGCGAGGGGGGTCCGGGCTAAGATAACACCAGAAGCGCGTTTGCT AGACTACATGTGCACACCGATCTCCGCGTTGTGCTCAGGATTCACGAGGA ACGTGCATACGCACTTCGCTTCGACAAGAAGGTCGAGAACGGCCAAAGTT CTGCCTCCTATTTCTTTCGAGCGCGTTGTGTTGTTCCGTTGTCTTCATTC ACGGTGCCCGAGCAAAAGGAGACGCGTCGTGTTGTGTGGCGAGAGTAAGC ACGCGATTTGACGCGGCACGCTCCAATCGACACTCGGGATCACTTGCTGC CCGCTGCATGAACAATTGCTAGACTTACCCGCCGATTGCAGCAAACAAGC TCCTACGGGGCCTGCCGCAAAGCAATCCTAGGCATTCACAATCGCCGCTT GTTTTCAAAGGTTCTTACGAATCAGAAAGCAATCACAGGCTGCTTGCAAT TTCAGCTTGTTTTGAAAGGTTCTTATGAATCAGAACCGGGAATGTAAGCA CGTGGTTTGGACCACCCATGCCGAGAGGCTCAAACCAGGACTTCGTGGAT TCTGTATTATCTTTGGATTAGCTAGCCGGACAATGGTAGAATTGGGAATA TTTGTTGTGCGACATTACTGTGTAAAACAATGAAAGAGTGCTGACTTGAG CCTCTCGGAAAGAGCGTTCCGAATCACGCGTCAAATTCCGAGATCTGGTT CGTGAAAACCGTGACAACAAACGAGAAATTCCTGCATTTGTTATTTTCTC CCGTGTCTTGAAATGGAAGCTAGCTTCGCGTGACCACAACTCTTGGGAGA ACGCGAATTAAGCCTTGATCGTACCAGGTTGATTTGTGAAACCTACATTC ATACCGATTTCGGCATTGGATGATTCTCCACTTGGCCGCCAATAACTGGG TTTACTCGCAATGAAGTCGGATTGCAACAAATTGATACCCTGTTTACTTG CAGGAGTAGCCACAGAGTTTCAAGCTGAGACTCGAAGAAACGGAGAATCG AAAGCCGAATGAAGAAATAACAAATTGTTGAGCAGCCCATCTTGCAGGGT AGTTTTGCGGGAGAAAACCCGCCGGCTCGCTTGAAAGGTACTACTTGGAA TCGTCTTCGTAAAGAAATGAACCCAGCCTGCAGGGTAGTTTTGCGGGAGA AAACCCGCCGGTTCGCTTGAAAGGTAGTACTTGCAATCGTCTTTGCAAAG AAATGCGGTTACACCTTGATGAAGCAACCATCGTCGATGCCCCGAGCCCG AAAGTTTTTATTTGAAGATCGAAACGCGTGGCCAAACACGATGGCGCCAT GAGATACAAACGTACGCAGCACCCTACCGTTCAAATTCGGCCTTCCGCTT CCTGATTCACGTCCAACCTTGGGACCTTAAAAAATCCTGCACAACGCGGG TTCCCCAACAGCGACGCGCACACCGCAAGTGCACGAAATAATTTTCCTCG TCTCCCCCTCGCGGCAACGTCGTGTTTCCAGCGAGGTAGACGGTGTCCTG TACGAGCTGGACGGCCGCAAAGAAGGTCCAGTGCCGCATGGATCCACGTC GCCAGCGACGCTCCTGCAAGACGCGTGCGGCGTCGTGAAACAGTTCATGG ACCGGGACCCCGGCGAGCTGAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1275:41..6763+

>mRNA_H-canaliculatus_F_contig1275.2290.1 ID=mRNA_H-canaliculatus_F_contig1275.2290.1|Name=mRNA_H-canaliculatus_F_contig1275.2290.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1440bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1275:41..6763+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCGAGGCGGAAGCTGTGTCTGCGCCCTCCCCTTTCAAATCTGACAA
AGGGAGGAAGAGATGGTTCCCGCTCGATGGCCGAGGCGGAAGCTGTGTCT
GCGCCCTCCCCTTTCAAATCTGACAAAGGGAGGAAGAGATGGTTCCCGCT
CGAGTCTAATCCGGACGTTATGAACAAGTACATCGCAAAGATGGGATGGC
CGGCAGAAGCATACCGAGTCTAATCCGGACGTTATGAACAAGTACATCGC
AAAGATGGGATGGCCGGCAGAAGCATACCGGTTCACGGACGTGTACAGCA
CGGAGGATTGGGCGCTCGCGATGGTACCTCAGCCAGTCCTTGGCGTTGTG
ATGCTCTTTCCCATTAAGGAGTCCACGGAGAAGTACCGGGAGGCGGAGGA
GGCGCGGATGCGGGACTCCACAGAGACGCCCAACCCCGAGCTGTACTTCA
TGTTCACGGACGTGTACAGCACGGAGGATTGGGCGCTCGCGATGGTACCT
CAGCCAGTCCTTGGCGTTGTGATGCTCTTTCCCATTAAGGAGTCCACGGA
GAAGTACCGGGAGGCGGAGGAGGCGCGGATGCGGGACTCCACAGAGACGC
CCAACCCCGAGCTGTACTTCATGAAGCAAACGGTCGGCAACGCTTGCGGA
ACGGTCGGGTTGCTACACTGCGCGCTAAATGCGTCCGTTTCCAAAGGGAT
TTCGCTTGGAAGCAAACGGTCGGCAACGCTTGCGGAACGGTCGGGTTGCT
ACACTGCGCGCTAAATGCGTCCGTTTCCAAAGGGATTTCGCTTGACAAAG
ATTGCTTCTTGCACCGGTTTTGGGAGAAGACTAGACAGCTCACACCGGCG
CAAATCGCGCAGGCTCTCCATGATACAAAGATTGCTTCTTGCACCGGTTT
TGGGAGAAGACTAGACAGCTCACACCGGCGCAAATCGCGCAGGCTCTCCA
TGATGAGGATGAGCTCGAGGAGGTCCACGAGGAGGCTGCCCAACAGGGCC
AGAGCGATCAGATCGCCCGCGAGGAAAAAATCAACACTCATTTCGTGTGC
CTCACGAGGATGAGCTCGAGGAGGTCCACGAGGAGGCTGCCCAACAGGGC
CAGAGCGATCAGATCGCCCGCGAGGAAAAAATCAACACTCATTTCGTGTG
CCTCACCGAGGTAGACGGTGTCCTGTACGAGCTGGACGGCCGCAAAGAAG
GTCCAGTGCCGCATGGATCCACGTCGCCAGCGACGCTCCTGCAAGACGCG
TGCGGCGTCGTGAAACAGTTCATGGACCGGGACCCCGGCGAGCTGAGGCG
AGGTAGACGGTGTCCTGTACGAGCTGGACGGCCGCAAAGAAGGTCCAGTG
CCGCATGGATCCACGTCGCCAGCGACGCTCCTGCAAGACGCGTGCGGCGT
CGTGAAACAGTTCATGGACCGGGACCCCGGCGAGCTGAGG
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