mRNA_H-canaliculatus_F_contig12740.2288.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12740.2288.1
Unique NamemRNA_H-canaliculatus_F_contig12740.2288.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12740.2288.1 vs. uniprot
Match: D7FMA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMA1_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 7.200e-7
Identity = 61/145 (42.07%), Postives = 67/145 (46.21%), Query Frame = 1 
Query:    1 SRSNLGVENGISRAHEISSQAAAAATLAAEVGGYKVATLPPTHSGAIGGEVRAAAPAXXXXXXXXXXXXXNGT-------------------DVAAAQALAEGGSYGGESSSS-----------EGDMTWEDFLATTDEGVGDPA 345
            SRS L V+N  SR  EISSQAAAAA  AAE GGY VA LPP +S   G            XXXXX     NGT                   ++ AA A       GG                EGDMTWEDFLATTD+ +GD A
Sbjct:   61 SRSTLSVDNRASRTQEISSQAAAAAVFAAEAGGYNVAGLPPAYSSGAGRNXXXXX-----XXXXXSTTYTNGTSSSLELSVNSGPGGRTIPREMVAAGADEAFDPAGGXXXXXXXXXXXXXXXXEGDMTWEDFLATTDD-LGDSA 199
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BLAST of mRNA_H-canaliculatus_F_contig12740.2288.1 vs. uniprot
Match: A0A6H5KT18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT18_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 5.580e-5
Identity = 49/120 (40.83%), Postives = 58/120 (48.33%), Query Frame = 1 
Query:   55 SQAAAAATLAAEVGGYKVATLPPTHSGAIGGEV------RAAAPAXXXXXXXXXXXXXNG--------TDVAAAQA-----LAEGGSYG------GESSSSEGDMTWEDFLATTDEGVGD 339
            SQAAAAA  AAE GGY +A LPP +S   GG        R ++ A             N          ++ AA A      A GG+ G      G  SSSEGDMTW +FLATTDE +GD
Sbjct:   11 SQAAAAAVFAAEAGGYSIAGLPPAYSVGAGGNGGGAHHRRISSTAYTNGTSSSLELSVNSGPGGRSIPREMVAAGADEAFDPARGGTGGEDADDGGNDSSSEGDMTWAEFLATTDE-LGD 129
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12740.2288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMA1_ECTSI7.200e-742.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT18_9PHAE5.580e-540.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12740contigH-canaliculatus_F_contig12740:1398..2944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.0194194-CDS-H-canaliculatus_F_contig12740:1398..16961622928996.0194194-CDS-H-canaliculatus_F_contig12740:1398..1696Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12740 1399..1696 -
1696845643.1761732-CDS-H-canaliculatus_F_contig12740:1398..16961696845643.1761732-CDS-H-canaliculatus_F_contig12740:1398..1696Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12740 1399..1696 -
1622928996.0321016-CDS-H-canaliculatus_F_contig12740:2888..29441622928996.0321016-CDS-H-canaliculatus_F_contig12740:2888..2944Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12740 2889..2944 -
1696845643.184499-CDS-H-canaliculatus_F_contig12740:2888..29441696845643.184499-CDS-H-canaliculatus_F_contig12740:2888..2944Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12740 2889..2944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12740.2288.1prot_H-canaliculatus_F_contig12740.2288.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12740 1399..2944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12740.2288.1

>prot_H-canaliculatus_F_contig12740.2288.1 ID=prot_H-canaliculatus_F_contig12740.2288.1|Name=mRNA_H-canaliculatus_F_contig12740.2288.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=118bp
SRSNLGVENGISRAHEISSQAAAAATLAAEVGGYKVATLPPTHSGAIGGE
VRAAAPAGGSDHHRRLSSSANGTDVAAAQALAEGGSYGGESSSSEGDMTW
EDFLATTDEGVGDPAPVT
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mRNA from alignment at H-canaliculatus_F_contig12740:1398..2944-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12740.2288.1 ID=mRNA_H-canaliculatus_F_contig12740.2288.1|Name=mRNA_H-canaliculatus_F_contig12740.2288.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1547bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12740:1398..2944- (Hapterophycus canaliculatus Oshoro5f female)
AGCAGGAGTAACCTTGGAGTGGAGAACGGGATCAGTCGGGCCCATGAGAT
CAGCAGGTAAATCGAGGATTTTCGCGGCGGTGCCCAGAGAACTGCTCCAA
ACAGCCCCGTATTATTTGGAGCGACAGGTACTTGTAGTTGGTTTGCGAAC
TTTCACTGCGCTGTCTTCTGCACCTGCGATCCTGTCAGCGGTGGTCGATC
CCGTCAGCGGTGGTATGCGCGTAGATGTTTTCTCTCGGGGGTCGACGGAA
TGGGTGTGCATGGGCGCTTGCCATGCTCTTTGGTGGTTGTACTTGTAGGT
ACTTCTAGGTACAGCAGTATCCCTTCGACCTCATCTCTTGGGTCTGTTCT
AAGAGACACGCTGACGGCAGGTGGCGGAGCTCCCTCGCGAGTCGTACGTA
GGATCTGTAGCAGTCGGCCCCAGGGACCCATGTGATGATCAGGTCCCGCG
GAATGATGGGTATTTCTGCTCAAGCGTTTCTGCGTCACGACGCGGTAGCG
TTCGTGCACATGATGTTGCAGGTTCTCTCTGCTTGCAGCAAGCGGACAGC
GCTCCAAGACTTTCATGACATGAAATTTCGAAGAAAGAAATTGAGTTTCA
GTGAAATTATTTCGAAGGCGATCGGTGCCAACGACGTTTTTTGCCGGTTC
CTACTGCAGCACCGCACCACTGTAAGGGCACGGTGTAGACGCGGCACCCT
TGCGTAGACAGTCCACCACCGACCAGGTATCCTCAACCATGGACAGGCAA
AGGGACACGAAAGGAAACGGAAGCGGCAGCGGCATCACACTTGCCCTGTT
TTTCTTGCTACAACTGTCACGTGCCGTCCACCGTACGCATGACAAGGCCG
GTCGCACTCCACACCGTTTCCCAGTTTTGCCATATAAAAGTGGGGTACTG
CCTCCGTGAGCCAAGTACCTGTCCTTCCTCCATCCCTCCTGATCCTTTCG
CGTTTACTTTGGGCAGCATCTAGTACAGCAGTACAGCAAAACCGGGGGCT
TGATTGGGCTGTTGATGGGTAGTTTGTTGTCCAAAGAGCCTGGTGCCCAC
GAAGTGAATCAAGCCTGGTCCTCTTGAGCCTTGAGCCGTGATCTCGTACA
GAAGCTTCTTCGCGACGATCTTCGTAGATACCGATTTCCCGCTCCCGTCT
CCCGGCTTCGAGAGCGCATGCCACGCCTGTCCCAATCAAGCACCCACACT
ACTCCCACACGCCCTGTCCCCCGTCGGTTGCCCCTCCCTTGTGAACAGCC
AAGCGGCGGCAGCGGCAACCCTTGCCGCCGAGGTGGGAGGCTACAAGGTC
GCCACCCTTCCCCCGACCCACTCGGGCGCGATAGGCGGCGAGGTCCGCGC
CGCCGCCCCCGCAGGCGGGAGCGACCACCACCGCCGGTTGAGCTCGAGCG
CGAATGGAACGGACGTCGCTGCCGCACAGGCGCTGGCGGAGGGCGGGAGC
TACGGCGGGGAGAGCTCGAGCAGCGAGGGAGATATGACCTGGGAAGACTT
CTTGGCGACGACAGATGAGGGCGTGGGGGACCCTGCGCCGGTGACAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12740:1398..2944-

>mRNA_H-canaliculatus_F_contig12740.2288.1 ID=mRNA_H-canaliculatus_F_contig12740.2288.1|Name=mRNA_H-canaliculatus_F_contig12740.2288.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=708bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12740:1398..2944- (Hapterophycus canaliculatus Oshoro5f female)
AGCAGGAGTAACCTTGGAGTGGAGAACGGGATCAGTCGGGCCCATGAGAT
CAGCAGAGCAGGAGTAACCTTGGAGTGGAGAACGGGATCAGTCGGGCCCA
TGAGATCAGCAGCCAAGCGGCGGCAGCGGCAACCCTTGCCGCCGAGGTGG
GAGGCTACAAGGTCGCCACCCTTCCCCCGACCCACTCGGGCGCGATAGGC
GGCGAGGTCCGCGCCGCCGCCCCCGCAGGCGGGAGCGACCACCACCGCCG
GTTGAGCTCGAGCGCGAATGGAACGGACGTCGCTGCCGCACAGGCGCTGG
CGGAGGGCGGGAGCTACGGCGGGGAGAGCTCGAGCAGCGAGGGAGATATG
ACCTGGGAAGACTTCTTGGCGACGACAGATGAGGGCGTGGGGGACCCTGC
GCCGGTGACACCAAGCGGCGGCAGCGGCAACCCTTGCCGCCGAGGTGGGA
GGCTACAAGGTCGCCACCCTTCCCCCGACCCACTCGGGCGCGATAGGCGG
CGAGGTCCGCGCCGCCGCCCCCGCAGGCGGGAGCGACCACCACCGCCGGT
TGAGCTCGAGCGCGAATGGAACGGACGTCGCTGCCGCACAGGCGCTGGCG
GAGGGCGGGAGCTACGGCGGGGAGAGCTCGAGCAGCGAGGGAGATATGAC
CTGGGAAGACTTCTTGGCGACGACAGATGAGGGCGTGGGGGACCCTGCGC
CGGTGACA
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