mRNA_H-canaliculatus_F_contig1274.2285.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1274.2285.1
Unique NamemRNA_H-canaliculatus_F_contig1274.2285.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1274.2285.1 vs. uniprot
Match: D7FKS6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKS6_ECTSI)

HSP 1 Score: 497 bits (1280), Expect = 4.740e-167
Identity = 252/340 (74.12%), Postives = 284/340 (83.53%), Query Frame = 3 
Query:  561 QQRQYQPRAGRDIYGSEGSRFHVSFDNARGGRRSTRARFNPDAGDKPSSTITPGDVAMVGGVSATIAAVQRYNRRRFLEEEAEGYGGVSPSPPQARARRKGREPTAVVTTLQLSLYCDRKGGPSDVLATLGKLSQTADVNSGRGLSTLVNEVCLTLLRSERDWIGGTGGIKSYPSDGRPSKREKKSTPASRAKRDFNRAVMRERSKWERETVSNTPDRGFSSSMAPSWGRTDGSRRRGTYAVATLMVAWAELNSTPPRTEARKGSWFSQDVGNRGEDRDRGFSVVNRESALTLLEWLGDEAAEGRGENVLDVEVLWTPADPEDSLDRDDLDSKWPELITL 1580
            Q R  +PRAGRDIYGSEGSRFH+ FD  RGGRRSTRARFNP  GD PS++ITPGDVAM+GGVSA +AAVQRYNR+RF++EE  G    +P PP  R+ R G   TAVVTTLQL LYCDR+GG  DVLATL KLSQTADVNS RGLSTL+NEVCLTLLRS RDW+GGTG +K Y S+GR + R KKS+P SRAKRDFNRA MRERSKWERETVSNTPDRGFSSS APSWG    +++ GTYAVATL+VAW+ LNSTPPR E R+G WF++D  +R +DR   FSVVNR+SALTLLEWLGDEAAEGRGENVLDVEVLWTPADP+DSLDR+DLD+KWPEL  L
Sbjct:  203 QGRYQRPRAGRDIYGSEGSRFHIRFDGGRGGRRSTRARFNPYDGDAPSTSITPGDVAMIGGVSAAVAAVQRYNRKRFVDEEGSGQRPSAPLPP--RSGRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGKKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFS-AQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDDDRGVEFSVVNRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 539
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1274.2285.1 vs. uniprot
Match: A0A7S0QBA5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBA5_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 3.350e-15
Identity = 77/247 (31.17%), Postives = 110/247 (44.53%), Query Frame = 3 
Query:  843 ARARRKGREPTAVVTTLQLSLYC-DRKGGPSDVLATLGKLSQTADVNSGRGLSTLVNEVCLTLLRSERDWIGGTGGIKSYPSDGRPSKREKKSTPASRAKRDFNRAVMRERSKWERETVSNTPDRGFSSSMAPSWGRTDGSRRRGTYAVATLMVAWAELNSTPPRTEARKGSWFSQDVGNRGEDRDRGFSVVNRESALTLLEWLGDEAAEGRGENVLDVEVLWTPADPEDSLDRDDLDSKWPELITL 1580
            +R   +  E       LQ++ YC DR+   + +   L  L++TAD +S  GL  LV++ CL  LRS +DW+               +  E K   ++  +  +NR V++ERSKWE E  S T              RT  S    TY VATL+V              R GS   +  G           V     A++ L    D + E   +N++  EVLWTP DP D +DRDD+   +PEL+TL
Sbjct:   46 SRGIEQADEAAGAAYCLQVACYCGDRQ---NSLYGKLQSLARTADTSSYEGLQQLVSDTCLATLRSSKDWLAAR------------TTSETKGLFSNDVESQYNRIVVKERSKWESEQKSLT--------------RT--SAGEATYMVATLVVL------------LRNGSELPEVTG-----------VNELREAISQL--AADVSIE---DNLIAAEVLWTPEDPNDVMDRDDMFLNFPELVTL 233
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BLAST of mRNA_H-canaliculatus_F_contig1274.2285.1 vs. uniprot
Match: A0A7S4DSS3_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DSS3_9EUKA)

HSP 1 Score: 87.4 bits (215), Expect = 7.350e-15
Identity = 76/236 (32.20%), Postives = 104/236 (44.07%), Query Frame = 3 
Query:  873 TAVVTTLQLSLYCDRKGGPSDVLATLGKLSQTADVNSGRGLSTLVNEVCLTLLRSERDWIGGTGGIKSYPSDGRPSKREKKSTPASRAKRDFNRAVMRERSKWERETVSNTPDRGFSSSMAPSWGRTDGSRRRGTYAVATLMVAWAELNSTPPRTEARKGSWFSQDVGNRGEDRDRGFSVVNRESALTLLEWLGDEAAEGRGENVLDVEVLWTPADPEDSLDRDDLDSKWPELITL 1580
            T  V  LQ+++YC  +G P+ +   L  L+  AD  S  GL  LV E  L LLRSE DW+ G          G       KS     A   FN+A+++ER+K+E E        G +               + +Y + T+MVA  +  + P                 RG D  R  S +   SA   +E           EN+L  EVLWTP DPEDSL R+++  K+PELI L
Sbjct:  182 TGTVMLLQVAVYCGDRG-PNSLYGRLNNLAAGADTWSEEGLRNLVQETTLALLRSEEDWVAGRSETFQKGMLG-------KSNDVESA---FNQALLKERAKFEEENTGRLKRVGAN---------------KPSYMIVTVMVALRDAPNLPTI---------------RGLDEMR--SALAMTSARASIE-----------ENLLAAEVLWTPEDPEDSLTREEVFLKFPELIDL 363
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BLAST of mRNA_H-canaliculatus_F_contig1274.2285.1 vs. uniprot
Match: A0A7S2X718_9EUKA (Hypothetical protein n=3 Tax=Lotharella TaxID=74819 RepID=A0A7S2X718_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 1.830e-14
Identity = 75/236 (31.78%), Postives = 104/236 (44.07%), Query Frame = 3 
Query:  873 TAVVTTLQLSLYCDRKGGPSDVLATLGKLSQTADVNSGRGLSTLVNEVCLTLLRSERDWIGGTGGIKSYPSDGRPSKREKKSTPASRAKRDFNRAVMRERSKWERETVSNTPDRGFSSSMAPSWGRTDGSRRRGTYAVATLMVAWAELNSTPPRTEARKGSWFSQDVGNRGEDRDRGFSVVNRESALTLLEWLGDEAAEGRGENVLDVEVLWTPADPEDSLDRDDLDSKWPELITL 1580
            T  V  LQ+++YC  +G P+ +   L  L+  AD  S  GL  LV E  L LLRSE DW+ G          G       KS     A   FN+A+++ER+K+E E        G +               + +Y + T+MVA  +  + P                 RG D  R  S +   SA   +E           EN+L  EVLWTP DP+DSL R+++  K+PELI L
Sbjct:  185 TGTVMLLQVAVYCGDRG-PNSLYGRLNNLAAGADTWSEEGLRNLVQETTLALLRSEEDWVAGRSETFQKGMLG-------KSNDVESA---FNQALLKERAKFEEENTGRLKRVGAN---------------KPSYMIVTVMVALRDAPNLPTI---------------RGLDEMR--SALAMTSARASIE-----------ENLLAAEVLWTPEDPDDSLTREEVFLKFPELIDL 366
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BLAST of mRNA_H-canaliculatus_F_contig1274.2285.1 vs. uniprot
Match: A0A835ZEJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ7_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 5.950e-14
Identity = 78/241 (32.37%), Postives = 112/241 (46.47%), Query Frame = 3 
Query:  882 VTTLQLSLYCDRKGGPSDVLATLGKLSQTADVNSGRGLSTLVNEVCLTLLRSERDWIGGTGGIKSYPSDGRPSKREKKSTPASRAKRDFNRAVMRERSKWERETVSNTPDRGFSSSMAPSWGRTDGSRR----RGTYAVATLMVAWAELNSTPPRTEARKGSWFSQDVGNRGEDRDRGFSV---VNRESAL-TLLEWLGDEAAEGRGENVLDVEVLWTPADPEDSLDRDDLDSKWPELITL 1580
            V  LQ++L    +     +LA L  +++ A+ +S  GLST V+EVCL L+R + DWI      + +               A RA+  FN   + ER+K ERETVS       S S      R+DG R     + T AV T+++A                         +GE   R F +   +N  SAL  +L  +  +A    GENVL VE+LWTP +P +SLDR  +   +PEL+ L
Sbjct:  201 VVKLQVALNASDRSSRG-ILAQLKSIAERAETSSRGGLSTAVSEVCLALVRRQPDWIASASQYEYFAP-----------RSAERAEAVFNTYAIAERTKVERETVSRFGGEDLSDSR-----RSDGVRPEDLGKPTQAVVTIVLAL------------------------KGESLKR-FQLERSINSASALRNVLTQVAGDATTDDGENVLGVELLWTPEEPWESLDRQAVLEDFPELMDL 399
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1274.2285.1 vs. uniprot
Match: A0A0M0K0F2_9EUKA (Membrane protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K0F2_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 9.980e-13
Identity = 67/234 (28.63%), Postives = 104/234 (44.44%), Query Frame = 3 
Query:  891 LQLSLYCDRKGGPSDVLATLGKLSQTADVNSGRGLSTLVNEVCLTLLRSERDWIGGTGGIKSYPSDGRPSKREKKSTPASRAKRD----FNRAVMRERSKWERETVSNTPDRGFSSSMAPSWGRTDGSRRRGTYAVATLMVAWAELNSTPPRTEARKGSWFSQDVGNRGEDRDRGFSVVNRESALTLLEWLGDEAAEGRGENVLDVEVLWTPADPEDSLDRDDLDSKWPELITL 1580
            LQ++ YCD +   + +   L K++ +AD +S  GL +LV++ CL +LRS +DW+                    +S  A   K D    +NR V+ ERSKWE E  +           AP          + TY VATL+V         P             +   G+ RD   ++ N  +A+++             +N+L  EVLWTP D  D +DRD+L   +PEL+++
Sbjct:   58 LQVACYCDDR--QNSLFGKLNKIASSADTDSELGLQSLVSDTCLAILRSSKDWLAA----------------RTESEIAGLLKNDVDAAYNRLVVTERSKWEVEQKA-------LKRTAPG---------QPTYMVATLVVLLRSAQPLKP-------------ISQNGDLRD---ALQNLAAAVSV------------DDNLLAAEVLWTPEDTNDVMDRDELFLNFPELVSV 229
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BLAST of mRNA_H-canaliculatus_F_contig1274.2285.1 vs. uniprot
Match: A0A7S0H5R7_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H5R7_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 6.040e-12
Identity = 72/241 (29.88%), Postives = 105/241 (43.57%), Query Frame = 3 
Query:  873 TAVVTTLQLSLYCDRKGGPSDVLATLGKLSQTADVNSGRGLSTLVNEVCLTLLRSERDWIGGTGGIKSYPSDGRPSKREKKSTPASRAKRDFNRAVMRERSKWERETVSN-----TPDRGFSSSMAPSWGRTDGSRRRGTYAVATLMVAWAELNSTPPRTEARKGSWFSQDVGNRGEDRDRGFSVVNRESALTLLEWLGDEAAEGRGENVLDVEVLWTPADPEDSLDRDDLDSKWPELITL 1580
            T  V  LQ+++YC  +G  S + + L  L + AD  S +GL  LV E  + LLRSE DW+ G          G       KS     A   FN A+++ER+K+E E VS      TPD+       PS            + V T++VA  +  S P  +                ED     ++ +  +++               EN+L  EVLWTP D  D+L R+++  K+PELI L
Sbjct:  180 TGTVMLLQVAVYCGDRGKNS-LFSRLNNLGREADTWSEQGLKNLVQESTIALLRSEEDWVAGRSETFQKGMFG-------KSNDVESA---FNAALLQERAKFEEENVSKRSKIQTPDK-------PS------------HMVVTILVALRDAPSLPTVSGI--------------EDMRAALAMTSARASIE--------------ENLLAAEVLWTPEDSSDTLSREEVFLKFPELIDL 362
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1274.2285.1 vs. uniprot
Match: A0A6T9D2F6_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A6T9D2F6_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 9.080e-11
Identity = 65/230 (28.26%), Postives = 103/230 (44.78%), Query Frame = 3 
Query:  891 LQLSLYCDRKGGPSDVLATLGKLSQTADVNSGRGLSTLVNEVCLTLLRSERDWIGGTGGIKSYPSDGRPSKREKKSTPASRAKRDFNRAVMRERSKWERETVSNTPDRGFSSSMAPSWGRTDGSRRRGTYAVATLMVAWAELNSTPPRTEARKGSWFSQDVGNRGEDRDRGFSVVNRESALTLLEWLGDEAAEGRGENVLDVEVLWTPADPEDSLDRDDLDSKWPELITL 1580
            LQ++ YC+ +   + +   L  +++TAD  S  GL  L ++ CL +LR+ +DW+      ++  S     + + +ST        +NR V++ER+KW+ E  S           AP          + TY VATL+V              R GS      G           V +   A+  L    D + E   +N+L  EVLWTP D  D +DRDD+   +PEL+++
Sbjct:   24 LQVACYCEDR--QTSLAGKLQSIARTADAGSYEGLQALCSDTCLAMLRTSKDWLAA----RTVSSTSTMFQNDVEST--------YNRLVVQERAKWDMEAKS-------LKRSAPG---------QPTYMVATLVVL------------LRSGSELPAISG-----------VSDLREAIAQL--AADVSVE---DNLLAAEVLWTPEDTNDVMDRDDMFLNFPELVSI 195
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1274.2285.1 vs. uniprot
Match: K9QD55_9NOSO (Uncharacterized protein n=11 Tax=Cyanobacteria TaxID=1117 RepID=K9QD55_9NOSO)

HSP 1 Score: 74.3 bits (181), Expect = 1.030e-10
Identity = 66/243 (27.16%), Postives = 100/243 (41.15%), Query Frame = 3 
Query:  870 PTAVVTTLQLSLYCDRKGGPSDVLATLGKLSQTADVNSGRGLSTLVNEVCLTLLRSERDWIGGTGGIKSYPSDGRPSKREKKSTPASRAKRDFNRAVMRERSKWERETVSNTPDR---GFSSSMAPSWGRTDG-----SRRRGTYAVATLMVAWAELNSTPPRTEARKGSWFSQDVGNRGEDRDRGFSVVNRESALTLLEWLGDEAAEGRGENVLDVEVLWTPADPEDSLDRDDLDSKWPELI 1574
            P   VT LQ+ L    +    D+   L K+++ AD NS  G + ++ E  L LLR    W+   GG +                  S A+  FNR  + ERSK+  ET+SN  ++     +    P+ G  D      S   G Y + TL+ A      TP                          ++ + ES   +L  +G       GE +L +EVLWTP    D+L  DDL +++P+L+
Sbjct:  127 PNVSVTRLQVGLLAQAR----DLQPELNKIAEIADTNSPEGRAAVLQETSLALLRHPEYWVYAGGGTQQ--------------AKLSSAESQFNRLALAERSKFSEETLSNVNNQLKAALAKEALPASGELDNPTKLISEGPGEYIIVTLLAATLGKLETP--------------------------AINSTESLRQVLRQIGSIP----GEQLLAIEVLWTPQAEGDTLSSDDLLAEYPDLM 321
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1274.2285.1 vs. uniprot
Match: A0A6T0A215_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6T0A215_CHRCT)

HSP 1 Score: 73.9 bits (180), Expect = 1.890e-10
Identity = 65/233 (27.90%), Postives = 104/233 (44.64%), Query Frame = 3 
Query:  891 LQLSLYC-DRKGGPSDVLATLGKLSQTADVNSGRGLSTLVNEVCLTLLRSERDWIGG--TGGIKSYPSDGRPSKREKKSTPASRAKRDFNRAVMRERSKWERETVSNTPDRGFSSSMAPSWGRTDGSRRRGTYAVATLMVAWAELNSTPPRTEARKGSWFSQDVGNRGEDRDRGFSVVNRESALTLLEWLGDEAAEGRGENVLDVEVLWTPADPEDSLDRDDLDSKWPELITL 1580
            +QL+ YC DR+     +   L  L++TA+ ++  GL  LV++ CL +LRS  DW+    +  +K +  +   S+              +NR V++ERSKWE E    +              RT     + TY V TL+V   E +  P    A  G+   +D                      + +   D + E   +N++  EVLWTP + +D +DRDD+   +PELIT+
Sbjct:  184 IQLACYCGDRE---KSLYGRLQSLARTAETDTYEGLQQLVSDTCLAMLRSSNDWLAARTSTNLKGFFKNDVESQ--------------YNRIVVQERSKWESEQQQLS--------------RTTSKAGQPTYMVVTLVVLLREGSELP----AISGTPTLRDA---------------------IAQLAADVSVE---DNLIAAEVLWTPEEDDDVMDRDDMFLNFPELITI 357
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1274.2285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKS6_ECTSI4.740e-16774.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0QBA5_9EUKA3.350e-1531.17Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S4DSS3_9EUKA7.350e-1532.20Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S2X718_9EUKA1.830e-1431.78Hypothetical protein n=3 Tax=Lotharella TaxID=7481... [more]
A0A835ZEJ7_9STRA5.950e-1432.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0M0K0F2_9EUKA9.980e-1328.63Membrane protein n=1 Tax=Chrysochromulina tobinii ... [more]
A0A7S0H5R7_9EUKA6.040e-1229.88Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A6T9D2F6_9EUKA9.080e-1128.26Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
K9QD55_9NOSO1.030e-1027.16Uncharacterized protein n=11 Tax=Cyanobacteria Tax... [more]
A0A6T0A215_CHRCT1.890e-1027.90Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1274contigH-canaliculatus_F_contig1274:1441..5903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue4e-14
Seed eggNOG ortholog227086.JGI_V11_71083
EggNOG free text desc.Protein of unknown function (DUF1517)
EggNOG OGs2QUI9@2759,COG4371@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProtein of unknown function DUF1517
Ec32 orthologEc-21_001970.1
Exons5
Model size1941
Cds size1752
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.1779835-UTR-H-canaliculatus_F_contig1274:1440..14841622928995.1779835-UTR-H-canaliculatus_F_contig1274:1440..1484Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1274 1441..1484 +
1696845642.8004742-UTR-H-canaliculatus_F_contig1274:1440..14841696845642.8004742-UTR-H-canaliculatus_F_contig1274:1440..1484Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1274 1441..1484 +
1622928995.413967-UTR-H-canaliculatus_F_contig1274:5758..59031622928995.413967-UTR-H-canaliculatus_F_contig1274:5758..5903Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1274 5759..5903 +
1696845642.8731568-UTR-H-canaliculatus_F_contig1274:5758..59031696845642.8731568-UTR-H-canaliculatus_F_contig1274:5758..5903Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1274 5759..5903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.2008119-CDS-H-canaliculatus_F_contig1274:1484..24531622928995.2008119-CDS-H-canaliculatus_F_contig1274:1484..2453Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1274 1485..2453 +
1696845642.8209672-CDS-H-canaliculatus_F_contig1274:1484..24531696845642.8209672-CDS-H-canaliculatus_F_contig1274:1484..2453Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1274 1485..2453 +
1622928995.219568-CDS-H-canaliculatus_F_contig1274:2837..29131622928995.219568-CDS-H-canaliculatus_F_contig1274:2837..2913Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1274 2838..2913 +
1696845642.8334365-CDS-H-canaliculatus_F_contig1274:2837..29131696845642.8334365-CDS-H-canaliculatus_F_contig1274:2837..2913Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1274 2838..2913 +
1622928995.2349603-CDS-H-canaliculatus_F_contig1274:3193..35241622928995.2349603-CDS-H-canaliculatus_F_contig1274:3193..3524Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1274 3194..3524 +
1696845642.8434255-CDS-H-canaliculatus_F_contig1274:3193..35241696845642.8434255-CDS-H-canaliculatus_F_contig1274:3193..3524Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1274 3194..3524 +
1622928995.3798275-CDS-H-canaliculatus_F_contig1274:4824..49831622928995.3798275-CDS-H-canaliculatus_F_contig1274:4824..4983Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1274 4825..4983 +
1696845642.8535132-CDS-H-canaliculatus_F_contig1274:4824..49831696845642.8535132-CDS-H-canaliculatus_F_contig1274:4824..4983Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1274 4825..4983 +
1622928995.398274-CDS-H-canaliculatus_F_contig1274:5541..57581622928995.398274-CDS-H-canaliculatus_F_contig1274:5541..5758Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1274 5542..5758 +
1696845642.8634012-CDS-H-canaliculatus_F_contig1274:5541..57581696845642.8634012-CDS-H-canaliculatus_F_contig1274:5541..5758Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1274 5542..5758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1274.2285.1prot_H-canaliculatus_F_contig1274.2285.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1274 1485..5758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1274.2285.1

>prot_H-canaliculatus_F_contig1274.2285.1 ID=prot_H-canaliculatus_F_contig1274.2285.1|Name=mRNA_H-canaliculatus_F_contig1274.2285.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=584bp
MIVSARRAMMIALLPVVATFFISPPQASRKALMAPTGTSSPQGVRLERFN
MMRLAGLPSSEESSARGTSVRIARGSPDVHDKDSSIAPGQDASLFDQNDS
VGGGATAAVGGRWRPLLTGPPLLLAATTACSQASAAAVTGGRIGGGGYTP
PPADRTPSAPPMQQQQRYEAPPQQRQYQPRAGRDIYGSEGSRFHVSFDNA
RGGRRSTRARFNPDAGDKPSSTITPGDVAMVGGVSATIAAVQRYNRRRFL
EEEAEGYGGVSPSPPQARARRKGREPTAVVTTLQLSLYCDRKGGPSDVLA
TLGKLSQTADVNSGRGLSTLVNEVCLTLLRSERDWIGGTGGIKSYPSDGR
PSKREKKSTPASRAKRDFNRAVMRERSKWERETVSNTPDRGFSSSMAPSW
GRTDGSRRRGTYAVATLMVAWAELNSTPPRTEARKGSWFSQDVGNRGEDR
DRGFSVVNRESALTLLEWLGDEAAEGRGENVLDVEVLWTPADPEDSLDRD
DLDSKWPELITLFSWKHFGELSALSSCLVDSALAEERLRPETGLALHIYL
VCPSFWWNFLLSDHESHSLQPGKNGDIDVPRAT*
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mRNA from alignment at H-canaliculatus_F_contig1274:1441..5903+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1274.2285.1 ID=mRNA_H-canaliculatus_F_contig1274.2285.1|Name=mRNA_H-canaliculatus_F_contig1274.2285.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4463bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1274:1441..5903+ (Hapterophycus canaliculatus Oshoro5f female)
TCTAATCTAGGCGTCGCATACTTGACCTCTGTCTGGAACTCGCCATGATT
GTGTCCGCCCGGAGAGCAATGATGATTGCTCTCCTACCAGTCGTGGCAAC
CTTTTTCATTTCACCACCGCAAGCAAGCCGCAAAGCTTTGATGGCGCCCA
CGGGAACAAGTTCTCCGCAGGGAGTCCGCCTCGAAAGATTCAACATGATG
AGGCTCGCCGGACTACCGTCGTCGGAAGAGAGCAGCGCACGGGGCACAAG
CGTGAGGATAGCTCGAGGTTCTCCTGACGTACACGACAAGGATTCGTCGA
TTGCTCCCGGACAGGATGCTTCGTTGTTCGATCAAAACGACAGCGTTGGC
GGCGGTGCGACTGCTGCTGTGGGTGGGCGGTGGCGGCCGTTGCTGACAGG
TCCGCCTCTGCTACTCGCTGCAACGACAGCGTGTTCCCAAGCCTCAGCAG
CAGCGGTGACTGGTGGGAGGATAGGCGGGGGGGGCTATACGCCCCCCCCT
GCCGACCGTACTCCGAGCGCGCCTCCGATGCAGCAGCAGCAACGATACGA
AGCACCTCCGCAGCAAAGGCAGTATCAGCCCAGAGCAGGTCGAGACATTT
ACGGGTCAGAAGGTAGCCGGTTTCATGTCTCCTTCGACAACGCGCGCGGG
GGCAGGCGGTCGACCCGTGCTCGATTCAACCCGGACGCAGGTGACAAACC
ATCAAGCACCATCACGCCGGGGGACGTTGCTATGGTCGGCGGGGTCAGCG
CCACCATCGCTGCTGTTCAGCGCTACAACAGGAGGCGATTTTTGGAAGAA
GAGGCTGAAGGGTACGGAGGGGTTTCTCCCTCTCCGCCGCAAGCACGGGC
TCGCCGGAAGGGCAGAGAACCGACAGCTGTGGTGACCACTCTGCAGTTGA
GTCTGTACTGTGACCGTAAGGGGGGTCCCAGCGACGTGCTGGCGACGCTG
GGCAAGCTCTCGCAGACTGCGGATGTTAATAGTGGGCGAGGGCTGTCGAC
CCTCGTAAATGAGGTGAGCGGGCGAAGGTGGCCTGAGGGAGCGCGCACTT
GCCGATCCTCCTGGATACGCACGTTTCAAGTAGCCTCATCCTTGTCCTTT
TTCCGGCTGGCTTCTGCGGAGATGCTTCCACTCCACTCTTGCATCTGAGC
CAGGAATCCACGCGGGTCCATAACATGTAGTGGCCATCGCGTCGATCTAG
TATCGTGCGCGAATCGATGAAAGCACTTGTCCGGCGGTGGCGTGGCTGAT
GTCGTTGTGACGGCAGTTGCACATGCTCCCTGTGGCCTGAATCTACTGTC
GTCGTCGCCTCTCGCGCTTGATGTTCAAAATTTTATATGATCTCTACCTG
ACTACGTGCGCATAGAACTAACGACCGAACCTCTCTCACCCCTGAAGGTG
TGCCTGACCCTGCTGCGGTCAGAAAGAGACTGGATCGGTGGAACTGGAGG
TATCAAGAGCTACCCTTCAGATGGTGAGATTGTCACGCTTATTTGGCCAT
ATTTTCGCAGATATACAGCAGAAGAACCCCTGGACCGCCAACCTTTGTGG
TTTGCGGAGGACGGGCGAACTTTTGTAAACGGAGTTTGCAAGTCATATGT
CGCAGCCAGGGGACCGGCCGCCGTTTGACGCCGGCCCCTACAAGTACGCT
GTGCTGCTGCGCCGCGCGGCCGCGTTGCCCTCCATCCCGGTCTTGAACAG
CGATTCCGAAATCCAGCGCGAACATCCCGGCTCGTCGTTGGTTCGTACTC
CAGGCCGTCCAAGCAAGCGCGAGAAGAAGTCCACGCCAGCATCCAGGGCA
AAGCGGGACTTCAATCGAGCCGTCATGCGCGAACGATCGAAGTGGGAGCG
AGAGACCGTGTCCAACACGCCGGATCGAGGCTTCAGCAGCAGCATGGCCC
CTTCCTGGGGGCGGACCGACGGCTCCCGAAGGCGCGGCACGTACGCGGTG
GCGACCCTGATGGTCGCCTGGGCGGAGTTGAACAGCACCCCTCCCCGGAC
CGAGGCACGAAAAGGCTCTTGGTTCTCGCAGGACGTCGGAAATCGCGGCG
AGGATCGAGACAGAGGATTTTCCGTCGTAAACAGGTGCGATAAACGGCTC
TTCGGTCTTTGCCTAGGTTGAGACGTGTTTGGAGTCTTCGTGCCAGCTGG
TGGTATACCGCTGGGGAGCGCTCGGTGGCCTGCCCGGGTCAAGCGTGATC
CACGGGATGTCGAATCGACGGTTTCGCTGCGGTAGTGTGGTGAGACACGA
CGAGGTTTCGGTTTCAGCCTGACACCCGGCTGCGTAGTTCGTTTTTACCG
GTGCGTTAACCCTCCGGCGACTTCCTGTGTGTTTCATGATCACTTCTGGT
GATCACTCTCCGTTACACGAGAAAACCGTACCATACTGCTGTAGCGCCGT
GTATCGATCGTTGCGACACATACATATCCATGGAAGCAACACCGCAGCAC
TCCGAGACCAGCTACGCATACTACTGTACTACGCAGACCTCGCACGAGAG
ACAGCAGCACCTATCGATCGTGCCTGGTGTAGGAAATATTGCAAACAAAC
CTGCGAGAACATTCCTATGGAGCGCTAGTGACCTTGATGGCCTTACTTGA
AAGGGGATCAGGGGGCGAGTGAAGTACGGAAGTACATGTACTTCTCCCAG
AGCCTTCAATGATCATTTGGGCGATCATTTGAGGAATATACTGGATTTAG
ATGACCTTGCGATTATGCGACAATCAGGAATACACTAGAATCAGCTCATA
GGGCGATATTGTAGTGACTCGGGAGCCCTTCTAGAACCCTGATGGACACC
CCCATTCGACCTAGAGCAGTCATTGTGGCTCTCAACTGTGGATGGTCCGT
GCTGTAGTTCTGTGTTTTCGTGTACTTCTCGGGGCCCCGCTGTTTCTTTT
TTCGAAACATGAAACCGTTATTCATTGCGCCGCGGGTGCGCTTGGCCGAC
CGGGAATCGAAGAATGGCTAGTCGCAGAGGGGTTAAGTTCGCATCGCTCG
GGTGTCATGCCTGGACCGCCCAGCTGAAAGATGCGGCGGTCCAGCCCGAG
TTTTCTCCGTTCGAAAAATGGACATGAATCTCCGGATTTCCCGGATTTCC
TTTTTCTATAGGTCGTTCTATCGATCGAGCGGAAGCTTCTCGTCGAAGCT
GTTGGGTTCCTCCATCCCCCACTCTCAGCGAGGCAAGCAGATAGGCTGGC
CGGTTGGCAAGCGGCTTTAAGAGCGTCAGTCCAAGCCGCCCCCGTCCGCC
TGCCGCTTGCTTACTCCTTGTTTGGGAATGTGGGTGCCTTTCGCGCATGC
TTGGTTCTGGGTCCTTGAAACGAGTGCGTGCCGCCCGTGCCGTCTGCATT
TTTTTGTTCTGTGGTGCCGCAAAAATCGAAGCAGAGAATCGGCGCTAACG
CTGCTCGAATGGCTCGGAGATGAGGCTGCTGAAGGGCGAGGAGAAAATGT
GTTGGACGTGGAGGTGCTCTGGACCCCCGCAGACCCGGAAGATTCGCTTG
ATCGTGACGATCTAGACTCCAAATGGCCCGAGCTGATCACCCTCTGACAA
GTGGCAGGAATGCGTAGAGGAGGGCGGGGGTATTGGCTTTCTGGGCGCCT
CTCCTCCATGGAAGGCTATAAAGTTCTTGGGTTCGAGTAGGAAAGAATTG
AGACCATTGACTTCCTTCAATGTATGAATACACTCACGTGTACGATAGGA
GGGTTAAACATAGATGTGTGTCCAAGATGTGTGTGTTACTTGTAGAGGAG
AGGAGAGGGTAAAATAAGGCCAGCGTGATTTGTACTTACGGCATACCACA
TCTTAGAATCTGTCTTCAAAAATAGAAAAGAAAGAGCAAGCCCAGCCATA
AAATAGTAACGCGTGCGCTGCACGCTCGAAGGTTGTCGGTGTTGACTGTC
GAGAACAGGTAAATAACCATCTGCAGGATGGAGTAGACCTGATCAACACT
GCCATGTTGTAGGTCGCTCTTCATATCGTCGGCGGGTTCGCTCCCCCAAT
TTTCATCTATTTGGTTGACCCGGGTGGACACGCTGAGACTGCCGTAATTT
CTTCGATTCACACTTTGGTTTGCTCCAATTAGCTTCACTTATGTTGCCCA
CCTTCTCGTGGAAGCACTTTGGGGAGTTGTCCGCGCTCTCTTCTTGTCTT
GTCGACTCTGCTTTGGCGGAGGAACGCCTTCGCCCAGAGACAGGACTTGC
CCTGCACATCTATCTTGTTTGCCCCTCATTTTGGTGGAATTTCCTTCTAA
GTGACCACGAGAGCCATTCTTTGCAACCTGGAAAGAACGGAGATATAGAC
GTGCCAAGAGCAACGTGACGGTCGTGAGTGCGAAGAGATCACGCAACGTG
CTTGGATCTTAGCAAGGCTGCCGTCTGCGAAGAACACGTGTTTTTGTGAC
AGGTTCAAAAGAGGTTGAAAAAAGAGGAAGAACACCCAATTGTTTTTTGT
GATTCAATCAAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1274:1441..5903+

>mRNA_H-canaliculatus_F_contig1274.2285.1 ID=mRNA_H-canaliculatus_F_contig1274.2285.1|Name=mRNA_H-canaliculatus_F_contig1274.2285.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3504bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1274:1441..5903+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATTGTGTCCGCCCGGAGAGCAATGATGATTGCTCTCCTACCAGTCGT
GGCAACCTTTTTCATTTCACCACCGCAAGCAAGCCGCAAAGCTTTGATGG
CGCCCACGGGAACAAGTTCTCCGCAGGGAGTCCGCCTCGAAAGATTCAAC
ATGATGAGGCTCGCCGGACTACCGTCGTCGGAAGAGAGCAGCGCACGGGG
CACAAGCGTGAGGATAGCTCGAGGTTCTCCTGACGTACACGACAAGGATT
CGTCGATTGCTCCCGGACAGGATGCTTCGTTGTTCGATCAAAACGACAGC
GTTGGCGGCGGTGCGACTGCTGCTGTGGGTGGGCGGTGGCGGCCGTTGCT
GACAGGTCCGCCTCTGCTACTCGCTGCAACGACAGCGTGTTCCCAAGCCT
CAGCAGCAGCGGTGACTGGTGGGAGGATAGGCGGGGGGGGCTATACGCCC
CCCCCTGCCGACCGTACTCCGAGCGCGCCTCCGATGCAGCAGCAGCAACG
ATACGAAGCACCTCCGCAGCAAAGGCAGTATCAGCCCAGAGCAGGTCGAG
ACATTTACGGGTCAGAAGGTAGCCGGTTTCATGTCTCCTTCGACAACGCG
CGCGGGGGCAGGCGGTCGACCCGTGCTCGATTCAACCCGGACGCAGGTGA
CAAACCATCAAGCACCATCACGCCGGGGGACGTTGCTATGGTCGGCGGGG
TCAGCGCCACCATCGCTGCTGTTCAGCGCTACAACAGGAGGCGATTTTTG
GAAGAAGAGGCTGAAGGGTACGGAGGGGTTTCTCCCTCTCCGCCGCAAGC
ACGGGCTCGCCGGAAGGGCAGAGAACCGACAGCTGTGGTGACCACTCTGC
AGTTGAGTCTGTACTGTGACCGTAAGGGGGGTCCCAGCGACGTGCTGGCG
ACGCTGGGCAAGCTCTCGCAGACTGCGGATGTTAATAGTGGGCGAGGGCT
GTCGACCCTCGTAAATGAGATGATTGTGTCCGCCCGGAGAGCAATGATGA
TTGCTCTCCTACCAGTCGTGGCAACCTTTTTCATTTCACCACCGCAAGCA
AGCCGCAAAGCTTTGATGGCGCCCACGGGAACAAGTTCTCCGCAGGGAGT
CCGCCTCGAAAGATTCAACATGATGAGGCTCGCCGGACTACCGTCGTCGG
AAGAGAGCAGCGCACGGGGCACAAGCGTGAGGATAGCTCGAGGTTCTCCT
GACGTACACGACAAGGATTCGTCGATTGCTCCCGGACAGGATGCTTCGTT
GTTCGATCAAAACGACAGCGTTGGCGGCGGTGCGACTGCTGCTGTGGGTG
GGCGGTGGCGGCCGTTGCTGACAGGTCCGCCTCTGCTACTCGCTGCAACG
ACAGCGTGTTCCCAAGCCTCAGCAGCAGCGGTGACTGGTGGGAGGATAGG
CGGGGGGGGCTATACGCCCCCCCCTGCCGACCGTACTCCGAGCGCGCCTC
CGATGCAGCAGCAGCAACGATACGAAGCACCTCCGCAGCAAAGGCAGTAT
CAGCCCAGAGCAGGTCGAGACATTTACGGGTCAGAAGGTAGCCGGTTTCA
TGTCTCCTTCGACAACGCGCGCGGGGGCAGGCGGTCGACCCGTGCTCGAT
TCAACCCGGACGCAGGTGACAAACCATCAAGCACCATCACGCCGGGGGAC
GTTGCTATGGTCGGCGGGGTCAGCGCCACCATCGCTGCTGTTCAGCGCTA
CAACAGGAGGCGATTTTTGGAAGAAGAGGCTGAAGGGTACGGAGGGGTTT
CTCCCTCTCCGCCGCAAGCACGGGCTCGCCGGAAGGGCAGAGAACCGACA
GCTGTGGTGACCACTCTGCAGTTGAGTCTGTACTGTGACCGTAAGGGGGG
TCCCAGCGACGTGCTGGCGACGCTGGGCAAGCTCTCGCAGACTGCGGATG
TTAATAGTGGGCGAGGGCTGTCGACCCTCGTAAATGAGGTGTGCCTGACC
CTGCTGCGGTCAGAAAGAGACTGGATCGGTGGAACTGGAGGTATCAAGAG
CTACCCTTCAGATGGTGTGCCTGACCCTGCTGCGGTCAGAAAGAGACTGG
ATCGGTGGAACTGGAGGTATCAAGAGCTACCCTTCAGATGGCCGTCCAAG
CAAGCGCGAGAAGAAGTCCACGCCAGCATCCAGGGCAAAGCGGGACTTCA
ATCGAGCCGTCATGCGCGAACGATCGAAGTGGGAGCGAGAGACCGTGTCC
AACACGCCGGATCGAGGCTTCAGCAGCAGCATGGCCCCTTCCTGGGGGCG
GACCGACGGCTCCCGAAGGCGCGGCACGTACGCGGTGGCGACCCTGATGG
TCGCCTGGGCGGAGTTGAACAGCACCCCTCCCCGGACCGAGGCACGAAAA
GGCTCTTGGTTCTCGCAGGACGTCGGAAATCGCGGCGAGGATCGAGACAG
AGGATTTTCCGTCGTAAACAGGCCGTCCAAGCAAGCGCGAGAAGAAGTCC
ACGCCAGCATCCAGGGCAAAGCGGGACTTCAATCGAGCCGTCATGCGCGA
ACGATCGAAGTGGGAGCGAGAGACCGTGTCCAACACGCCGGATCGAGGCT
TCAGCAGCAGCATGGCCCCTTCCTGGGGGCGGACCGACGGCTCCCGAAGG
CGCGGCACGTACGCGGTGGCGACCCTGATGGTCGCCTGGGCGGAGTTGAA
CAGCACCCCTCCCCGGACCGAGGCACGAAAAGGCTCTTGGTTCTCGCAGG
ACGTCGGAAATCGCGGCGAGGATCGAGACAGAGGATTTTCCGTCGTAAAC
AGAGAATCGGCGCTAACGCTGCTCGAATGGCTCGGAGATGAGGCTGCTGA
AGGGCGAGGAGAAAATGTGTTGGACGTGGAGGTGCTCTGGACCCCCGCAG
ACCCGGAAGATTCGCTTGATCGTGACGATCTAGACTCCAAATGGCCCGAG
CTGATCACCCTAGAATCGGCGCTAACGCTGCTCGAATGGCTCGGAGATGA
GGCTGCTGAAGGGCGAGGAGAAAATGTGTTGGACGTGGAGGTGCTCTGGA
CCCCCGCAGACCCGGAAGATTCGCTTGATCGTGACGATCTAGACTCCAAA
TGGCCCGAGCTGATCACCCTCTTCTCGTGGAAGCACTTTGGGGAGTTGTC
CGCGCTCTCTTCTTGTCTTGTCGACTCTGCTTTGGCGGAGGAACGCCTTC
GCCCAGAGACAGGACTTGCCCTGCACATCTATCTTGTTTGCCCCTCATTT
TGGTGGAATTTCCTTCTAAGTGACCACGAGAGCCATTCTTTGCAACCTGG
AAAGAACGGAGATATAGACGTGCCAAGAGCAACGTGACTTCTCGTGGAAG
CACTTTGGGGAGTTGTCCGCGCTCTCTTCTTGTCTTGTCGACTCTGCTTT
GGCGGAGGAACGCCTTCGCCCAGAGACAGGACTTGCCCTGCACATCTATC
TTGTTTGCCCCTCATTTTGGTGGAATTTCCTTCTAAGTGACCACGAGAGC
CATTCTTTGCAACCTGGAAAGAACGGAGATATAGACGTGCCAAGAGCAAC
GTGA
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