mRNA_H-canaliculatus_F_contig12738.2283.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12738.2283.1
Unique NamemRNA_H-canaliculatus_F_contig12738.2283.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12738.2283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12738contigH-canaliculatus_F_contig12738:914..3074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size507
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12738.2283.1prot_H-canaliculatus_F_contig12738.2283.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12738 1059..2991 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928994.9751806-UTR-H-canaliculatus_F_contig12738:913..10581622928994.9751806-UTR-H-canaliculatus_F_contig12738:913..1058Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12738 914..1058 -
1696845642.7098758-UTR-H-canaliculatus_F_contig12738:913..10581696845642.7098758-UTR-H-canaliculatus_F_contig12738:913..1058Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12738 914..1058 -
1622928995.0906951-UTR-H-canaliculatus_F_contig12738:2991..30741622928995.0906951-UTR-H-canaliculatus_F_contig12738:2991..3074Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12738 2992..3074 -
1696845642.7768662-UTR-H-canaliculatus_F_contig12738:2991..30741696845642.7768662-UTR-H-canaliculatus_F_contig12738:2991..3074Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12738 2992..3074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928994.995844-CDS-H-canaliculatus_F_contig12738:1058..10711622928994.995844-CDS-H-canaliculatus_F_contig12738:1058..1071Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12738 1059..1071 -
1696845642.7192757-CDS-H-canaliculatus_F_contig12738:1058..10711696845642.7192757-CDS-H-canaliculatus_F_contig12738:1058..1071Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12738 1059..1071 -
1622928995.0135946-CDS-H-canaliculatus_F_contig12738:1465..15761622928995.0135946-CDS-H-canaliculatus_F_contig12738:1465..1576Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12738 1466..1576 -
1696845642.7298415-CDS-H-canaliculatus_F_contig12738:1465..15761696845642.7298415-CDS-H-canaliculatus_F_contig12738:1465..1576Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12738 1466..1576 -
1622928995.0281868-CDS-H-canaliculatus_F_contig12738:2098..22311622928995.0281868-CDS-H-canaliculatus_F_contig12738:2098..2231Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12738 2099..2231 -
1696845642.7486243-CDS-H-canaliculatus_F_contig12738:2098..22311696845642.7486243-CDS-H-canaliculatus_F_contig12738:2098..2231Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12738 2099..2231 -
1622928995.0751815-CDS-H-canaliculatus_F_contig12738:2969..29911622928995.0751815-CDS-H-canaliculatus_F_contig12738:2969..2991Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12738 2970..2991 -
1696845642.7606974-CDS-H-canaliculatus_F_contig12738:2969..29911696845642.7606974-CDS-H-canaliculatus_F_contig12738:2969..2991Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12738 2970..2991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12738.2283.1

>prot_H-canaliculatus_F_contig12738.2283.1 ID=prot_H-canaliculatus_F_contig12738.2283.1|Name=mRNA_H-canaliculatus_F_contig12738.2283.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=93bp
MPRLQFQGQADRAGHFVQRRCAGLCFRRHDRDPNAGVCPPRKHTSGGAER
STSFDRGCLTWTGLLAARRVVEQEGPLTGKPTGRSRYISLFT*
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mRNA from alignment at H-canaliculatus_F_contig12738:914..3074-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12738.2283.1 ID=mRNA_H-canaliculatus_F_contig12738.2283.1|Name=mRNA_H-canaliculatus_F_contig12738.2283.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2161bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12738:914..3074- (Hapterophycus canaliculatus Oshoro5f female)
GATACGGGGATACGGGGATAGACTGAGGCCAAGGGTCTCATTACGGCGGT
GATAAGTCTCACGAATGGCTCGCTCTGTCACGAATGCCCCGCCTACAATT
CCAAGGTGCGTGCGTGTGGAAGGCCGCTGTCTTTGCCTTTTTCTTTCGGT
GGCTTGCCAAAGCTGGGGCTCACTCGGAGTTTCTGTGTGGATGTGCCACT
ATGATAGTAGTCACGTGCTGCTGCTGGCTTGTCCCCGCAAAACTGGTCCC
CAAGTGACCTGGCGGAACGTTTTGTATTTCGATTTTGGCACATCAGGTAC
TATCGATGGTCGCTAGTCTACATGGCGTACCTCCGGGGGTGTGATGATGG
CATAGAAGGAGCGGTCTGCGACGTTTTGGTTGAGCTGGTTGAGCGCACGG
TCTGCTATGATAGTCCATTGAGCTTAAGAAGCGGACGGGGCGGTGGGACG
GGGCCATCGATGACAGTGGCAGCGGTTCGGTTTTCGCGTTGGGGTTCCAT
GTTTCATGTGGGGAGTAGCTCCAGGGTCCAGGACACCGCCCTTTGAGCGT
TCACCCTCTGGCGACTTCGGGCATAGATAGGAGAGAATGCCTGCCCACGC
ACTGACTGTGAACCCGTTTCCCCCTCTTCAAGGTTCCAGTCACCCCCCAC
CCTCTTATGGCCTCCTGCGCCTGCCATTTGACCCTTCGCCCGGCTGCCTC
CGACCTAGGTCCCTTTCACTCAACGCAGTGAGTGATGTCTCAGGCGCTCG
AACCCTTCTTACGCCACCCCTCTCCCGCCGTCGCCGCCGTGATTGCATCT
CGCTTGTTTTTCCTGGCGCTCTGCCCCTCCCTGCATTGGGCAGGTCAAGC
AGATCGGGCTGGCCATTTCGTGCAGAGGAGGTGTGCGGGATTGTGCTTCC
GCCGCCATGATCGCGATCCGAACGCGGGGGTATGCCCGCCCCGAAAGCAT
ACCAGTGGCGGGGCCGAAAGAAGCACGTAGCGACCTGGACGAGAAGGTGC
ACGCAGGCGACTATCCTCATGATCGCAAAAGAGTAGATGCTGTCGCTCGA
TTCGTCATTCAGACTTGACAAGATGGCGCATCGAAGGCAGGATATGTGGT
TCCTTCTGTGATCTGTCTCGCTGCAGTGAGTCTCGCAAATGGAGATGTCG
TGGTTCCACTATCCTGCTTTGCAGCCTCACTCGAGATCTCGCCGTATCCC
GTGATGAGGCTACATGTGCGGCGTAATTTTGGTGGTTCGACGAAAAAATA
CCCGTTCTTGATGATTTGCTTGGCTGCCGCACATCCAGTGGGTCGAGCGT
GCTGGGGCTCTGTGGTGTCACGAGGTTGCACATCAGTTTGGGAGATTCAG
GAACGCATGGCAGGGGAGCTCGTGCTCCAGATCTGCTGTGTGAGGCTCGT
GGTATGCACCACAACAATGGTGCATTGGAACCCGCACCACCGCTGTGTTG
AATCATGGTGTGCGCGCTGAATGTCTTGGGTGGTTCGTTGGTTCACAGGA
GTTTTGATCGCGGGTGCTTAACCTGGACTGGACTACTTGCTGCACGGCGT
GTGGTGGAGCAGGAAGGGCCGTTGACTGGGAAACCCACTGGAAGAAGCAG
GTACATCAGGTGTGTGTAGCGGCAGATCGCACGTTCATTCCGCTGGTGGG
CCTGGGCAGAGGGCTGCTGGGTACTTAGTGTTAGGGTAGGTCCCCACTCG
TGCGTGTGCTCGCAGTTGCCCTACCTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTCTGCGTATCTCCGACGGTCTACTCTCCCTGCCTTGCAGTTCT
GTGTGTCTCGAATGGCGGTGCGGTTCTTTCATTGCCCAACGGAGCGGAGT
GCGCGAGGCGTATTTTGCCAAGGGGTTAGGCCTCGTCTGCCGCTTGACCC
CAGCGTTGAAGTCGGATAGGCGTGCTCTCTCCTCAGGCCACACGCAGCAC
ACCGCCTCCGCTGCCGCCGCTTGTGCCGTATTTGGTCGTGCCCAACTCTC
CAGCCTCTTCACGTGATCGTGAACGGCGTGAGGCCGAGGAAGGCGGTAGC
GATGACGACATGACGAAGAAGGGGGGAAGCCCCGAGACACTGAGGGAGCT
CAAGGAATGGATGCGGGCGTCGATGCTTCTGGCTTCTGGAGGGCATCGCC
GTACCCATGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12738:914..3074-

>mRNA_H-canaliculatus_F_contig12738.2283.1 ID=mRNA_H-canaliculatus_F_contig12738.2283.1|Name=mRNA_H-canaliculatus_F_contig12738.2283.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12738:914..3074- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCCGCCTACAATTCCAAGATGCCCCGCCTACAATTCCAAGGTCAAG
CAGATCGGGCTGGCCATTTCGTGCAGAGGAGGTGTGCGGGATTGTGCTTC
CGCCGCCATGATCGCGATCCGAACGCGGGGGTATGCCCGCCCCGAAAGCA
TACCAGTGGCGGGGCCGAAAGAAGCACGTCAAGCAGATCGGGCTGGCCAT
TTCGTGCAGAGGAGGTGTGCGGGATTGTGCTTCCGCCGCCATGATCGCGA
TCCGAACGCGGGGGTATGCCCGCCCCGAAAGCATACCAGTGGCGGGGCCG
AAAGAAGCACGAGTTTTGATCGCGGGTGCTTAACCTGGACTGGACTACTT
GCTGCACGGCGTGTGGTGGAGCAGGAAGGGCCGTTGACTGGGAAACCCAC
TGGAAGAAGCAGGTACATCAGGAGTTTTGATCGCGGGTGCTTAACCTGGA
CTGGACTACTTGCTGCACGGCGTGTGGTGGAGCAGGAAGGGCCGTTGACT
GGGAAACCCACTGGAAGAAGCAGGTACATCAGCCTCTTCACGTGACCTCT
TCACGTGA
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