mRNA_H-canaliculatus_F_contig12735.2280.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12735.2280.1
Unique NamemRNA_H-canaliculatus_F_contig12735.2280.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12735.2280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12735contigH-canaliculatus_F_contig12735:1394..2308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size915
Cds size576
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928994.6606708-UTR-H-canaliculatus_F_contig12735:1393..17321622928994.6606708-UTR-H-canaliculatus_F_contig12735:1393..1732Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12735 1394..1732 +
1696845642.5928621-UTR-H-canaliculatus_F_contig12735:1393..17321696845642.5928621-UTR-H-canaliculatus_F_contig12735:1393..1732Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12735 1394..1732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928994.6737516-CDS-H-canaliculatus_F_contig12735:1732..23081622928994.6737516-CDS-H-canaliculatus_F_contig12735:1732..2308Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12735 1733..2308 +
1696845642.6041522-CDS-H-canaliculatus_F_contig12735:1732..23081696845642.6041522-CDS-H-canaliculatus_F_contig12735:1732..2308Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12735 1733..2308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12735.2280.1prot_H-canaliculatus_F_contig12735.2280.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12735 1733..2308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12735.2280.1

>prot_H-canaliculatus_F_contig12735.2280.1 ID=prot_H-canaliculatus_F_contig12735.2280.1|Name=mRNA_H-canaliculatus_F_contig12735.2280.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=192bp
MPGGLSVWGKRSWQAVALGLREPSQKDNPGHDFERPFLAVYVCVCVLSGQ
LGTCRSCVSLCAELLFRDPLPFFTTIAPVSYLQLPFVTKSQQHQRKTLLS
ETSHVHSRGSCRIPHSEGSVPREKRSTRVRVPNEAPLLRKPLLPSCSSFP
LLPSPSLRSPRPFHPSPLLPPLTRNAASCFSLRASRSFPLPV
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mRNA from alignment at H-canaliculatus_F_contig12735:1394..2308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12735.2280.1 ID=mRNA_H-canaliculatus_F_contig12735.2280.1|Name=mRNA_H-canaliculatus_F_contig12735.2280.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=915bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12735:1394..2308+ (Hapterophycus canaliculatus Oshoro5f female)
GCCCCGCAGTCGGCTAGTTGAGGGACTGGGTGCGGCGGGGTTGATTTGAG
CGTTTTGAGGAAAGCCGTAGCAACACGGCAGGAACGCCTCCCGAGGTGCA
TGTCGTGTGAGACGTACCTCGAGGTTTCTGTCGAATTCCCGATTTCATCG
GCGAGGGGGAGTGACTCCGCTCAGTGCTGGCGCCACGAGTAGCTCGCTCG
CGCCGTTCGCGTGCTTGCGATGAGTGGCGTTTCATTCGAGTTTTCAGCGG
GAGGCTGTGGGGACCGGGCGGCCAACCAGAAGGCCTCAGCATCCGCGAAA
ATATGCGAAGATCAAACGCCCCGTTAATCGCGGACTTCAATGCCGGGAGG
GCTGAGTGTCTGGGGGAAGAGATCATGGCAGGCGGTAGCCCTCGGCCTGA
GAGAACCTTCGCAGAAGGACAACCCTGGACATGACTTCGAGCGCCCCTTC
CTCGCCGTCTATGTGTGTGTGTGTGTGCTGTCCGGACAGCTAGGCACGTG
CCGATCTTGTGTTTCGCTTTGTGCCGAGCTTTTGTTCCGCGATCCACTGC
CGTTTTTCACAACGATCGCGCCTGTCTCCTATCTCCAGCTCCCTTTCGTG
ACAAAGAGTCAACAACACCAAAGGAAGACCCTCCTCTCAGAGACAAGTCA
TGTCCACTCGCGGGGGTCGTGTCGAATTCCTCACAGCGAGGGTTCAGTAC
CGAGGGAGAAACGTTCCACGCGTGTCAGAGTGCCAAATGAGGCCCCTCTG
CTCCGTAAGCCGTTGCTACCGTCGTGCTCCTCCTTTCCCCTCCTCCCGTC
GCCTTCGCTTCGCTCGCCCCGTCCCTTCCACCCGTCGCCTTTGCTGCCGC
CGCTCACGCGTAACGCTGCCTCTTGTTTTTCCTTGCGCGCCTCCCGCTCC
TTTCCTCTTCCTGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12735:1394..2308+

>mRNA_H-canaliculatus_F_contig12735.2280.1 ID=mRNA_H-canaliculatus_F_contig12735.2280.1|Name=mRNA_H-canaliculatus_F_contig12735.2280.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1152bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12735:1394..2308+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGGGAGGGCTGAGTGTCTGGGGGAAGAGATCATGGCAGGCGGTAGC
CCTCGGCCTGAGAGAACCTTCGCAGAAGGACAACCCTGGACATGACTTCG
AGCGCCCCTTCCTCGCCGTCTATGTGTGTGTGTGTGTGCTGTCCGGACAG
CTAGGCACGTGCCGATCTTGTGTTTCGCTTTGTGCCGAGCTTTTGTTCCG
CGATCCACTGCCGTTTTTCACAACGATCGCGCCTGTCTCCTATCTCCAGC
TCCCTTTCGTGACAAAGAGTCAACAACACCAAAGGAAGACCCTCCTCTCA
GAGACAAGTCATGTCCACTCGCGGGGGTCGTGTCGAATTCCTCACAGCGA
GGGTTCAGTACCGAGGGAGAAACGTTCCACGCGTGTCAGAGTGCCAAATG
AGGCCCCTCTGCTCCGTAAGCCGTTGCTACCGTCGTGCTCCTCCTTTCCC
CTCCTCCCGTCGCCTTCGCTTCGCTCGCCCCGTCCCTTCCACCCGTCGCC
TTTGCTGCCGCCGCTCACGCGTAACGCTGCCTCTTGTTTTTCCTTGCGCG
CCTCCCGCTCCTTTCCTCTTCCTGTCATGCCGGGAGGGCTGAGTGTCTGG
GGGAAGAGATCATGGCAGGCGGTAGCCCTCGGCCTGAGAGAACCTTCGCA
GAAGGACAACCCTGGACATGACTTCGAGCGCCCCTTCCTCGCCGTCTATG
TGTGTGTGTGTGTGCTGTCCGGACAGCTAGGCACGTGCCGATCTTGTGTT
TCGCTTTGTGCCGAGCTTTTGTTCCGCGATCCACTGCCGTTTTTCACAAC
GATCGCGCCTGTCTCCTATCTCCAGCTCCCTTTCGTGACAAAGAGTCAAC
AACACCAAAGGAAGACCCTCCTCTCAGAGACAAGTCATGTCCACTCGCGG
GGGTCGTGTCGAATTCCTCACAGCGAGGGTTCAGTACCGAGGGAGAAACG
TTCCACGCGTGTCAGAGTGCCAAATGAGGCCCCTCTGCTCCGTAAGCCGT
TGCTACCGTCGTGCTCCTCCTTTCCCCTCCTCCCGTCGCCTTCGCTTCGC
TCGCCCCGTCCCTTCCACCCGTCGCCTTTGCTGCCGCCGCTCACGCGTAA
CGCTGCCTCTTGTTTTTCCTTGCGCGCCTCCCGCTCCTTTCCTCTTCCTG
TC
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