mRNA_H-canaliculatus_F_contig1273.2274.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1273.2274.1
Unique NamemRNA_H-canaliculatus_F_contig1273.2274.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1273.2274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1273contigH-canaliculatus_F_contig1273:15932..17012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1081
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1273.2274.1prot_H-canaliculatus_F_contig1273.2274.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1273 15994..16653 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.9228652-UTR-H-canaliculatus_F_contig1273:15931..159931622928993.9228652-UTR-H-canaliculatus_F_contig1273:15931..15993Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1273 15932..15993 +
1696845642.342431-UTR-H-canaliculatus_F_contig1273:15931..159931696845642.342431-UTR-H-canaliculatus_F_contig1273:15931..15993Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1273 15932..15993 +
1622928993.9519825-UTR-H-canaliculatus_F_contig1273:16653..170121622928993.9519825-UTR-H-canaliculatus_F_contig1273:16653..17012Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1273 16654..17012 +
1696845642.3625813-UTR-H-canaliculatus_F_contig1273:16653..170121696845642.3625813-UTR-H-canaliculatus_F_contig1273:16653..17012Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1273 16654..17012 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.936752-CDS-H-canaliculatus_F_contig1273:15993..166531622928993.936752-CDS-H-canaliculatus_F_contig1273:15993..16653Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1273 15994..16653 +
1696845642.353789-CDS-H-canaliculatus_F_contig1273:15993..166531696845642.353789-CDS-H-canaliculatus_F_contig1273:15993..16653Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1273 15994..16653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1273.2274.1

>prot_H-canaliculatus_F_contig1273.2274.1 ID=prot_H-canaliculatus_F_contig1273.2274.1|Name=mRNA_H-canaliculatus_F_contig1273.2274.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=220bp
MDEAGGLRGRRAGDHRDRGKNSGDDGSGRPFRSSITAKDAVGSSCSPPSS
RLRFRFPRREPYQHKSAALSASATQATRSGTRGERTRPPLSLALTRPSSS
DYPLSARSPLKLSPHAALRWAPPAAPAGQHRFRRGSGPVRWSLDRGRAAV
VGPPAVVPQGTGTLASPAAAAAALGKGSGTLALAGAGGGGSGSGNRLAES
SSSVCGVGTLAVWSRSSTS*
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mRNA from alignment at H-canaliculatus_F_contig1273:15932..17012+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1273.2274.1 ID=mRNA_H-canaliculatus_F_contig1273.2274.1|Name=mRNA_H-canaliculatus_F_contig1273.2274.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1081bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1273:15932..17012+ (Hapterophycus canaliculatus Oshoro5f female)
AGAGCGAAAAGAAGAGCGGCAGCGTCGGTTCGAGAACAGGTAGCGCGCGC
GGGCGGCGCCGGATGGACGAGGCCGGTGGGTTGCGGGGGCGCCGGGCCGG
CGATCATAGGGACAGGGGCAAGAACAGCGGCGACGACGGCAGTGGAAGGC
CTTTCCGCTCATCCATCACGGCTAAAGACGCGGTCGGGTCATCGTGCTCC
CCACCTTCTTCGCGCTTGCGCTTTCGTTTTCCTCGTCGAGAACCGTACCA
ACACAAGTCGGCGGCGCTCTCCGCCTCCGCCACACAAGCCACTCGCAGCG
GCACGCGGGGTGAACGGACGAGGCCACCCCTCTCGCTCGCCCTCACCCGC
CCTTCTTCCAGCGACTACCCTCTGAGTGCGAGGTCGCCGCTGAAGCTCTC
TCCGCACGCCGCTCTACGCTGGGCTCCTCCGGCGGCGCCGGCGGGTCAGC
ACCGCTTCCGGCGGGGCTCTGGCCCTGTGCGGTGGTCGCTCGACCGCGGA
CGAGCGGCAGTGGTGGGGCCGCCTGCGGTGGTACCGCAAGGGACGGGAAC
GTTGGCATCACCTGCCGCGGCGGCTGCCGCTCTCGGCAAGGGTTCGGGGA
CGCTTGCCCTGGCGGGAGCCGGGGGCGGCGGCAGCGGCAGCGGCAACCGT
CTCGCGGAGTCTTCGTCCTCCGTTTGCGGCGTGGGTACTCTGGCTGTTTG
GAGTCGTTCGAGTACATCGTAGTGTTATTATGGCAGCGCGTCTCTATGTT
TGTGTGTCCCGTGTTGTCTTTGTCATTTTAAGAGAATCGGTGTACACCTT
TGCGGTACACTAGGGGGTGAAACAGGACGAAGGTCGACTCTGGGTCTTCT
TCTCTCTCTCCGCCTGTCTCCATGAACAGGAATGAACGCAACTAGTAGTT
GTGTTTCCTTCCCGAAACAGAGACTGAACCCCAAAGGGATTCAGAACTCG
TGTGATTTTCGTTGAAAACAGTGAGAGAAATTCTTATCAATCCAGAAAAG
ACGGAGCCGGGAGACAGGCAGAAAATGAAGACTTTTTAACTCGTCGATGG
CGTGACTCTGAATGTGGTTGGAACAAGACGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1273:15932..17012+

>mRNA_H-canaliculatus_F_contig1273.2274.1 ID=mRNA_H-canaliculatus_F_contig1273.2274.1|Name=mRNA_H-canaliculatus_F_contig1273.2274.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1320bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1273:15932..17012+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACGAGGCCGGTGGGTTGCGGGGGCGCCGGGCCGGCGATCATAGGGA
CAGGGGCAAGAACAGCGGCGACGACGGCAGTGGAAGGCCTTTCCGCTCAT
CCATCACGGCTAAAGACGCGGTCGGGTCATCGTGCTCCCCACCTTCTTCG
CGCTTGCGCTTTCGTTTTCCTCGTCGAGAACCGTACCAACACAAGTCGGC
GGCGCTCTCCGCCTCCGCCACACAAGCCACTCGCAGCGGCACGCGGGGTG
AACGGACGAGGCCACCCCTCTCGCTCGCCCTCACCCGCCCTTCTTCCAGC
GACTACCCTCTGAGTGCGAGGTCGCCGCTGAAGCTCTCTCCGCACGCCGC
TCTACGCTGGGCTCCTCCGGCGGCGCCGGCGGGTCAGCACCGCTTCCGGC
GGGGCTCTGGCCCTGTGCGGTGGTCGCTCGACCGCGGACGAGCGGCAGTG
GTGGGGCCGCCTGCGGTGGTACCGCAAGGGACGGGAACGTTGGCATCACC
TGCCGCGGCGGCTGCCGCTCTCGGCAAGGGTTCGGGGACGCTTGCCCTGG
CGGGAGCCGGGGGCGGCGGCAGCGGCAGCGGCAACCGTCTCGCGGAGTCT
TCGTCCTCCGTTTGCGGCGTGGGTACTCTGGCTGTTTGGAGTCGTTCGAG
TACATCGTAGATGGACGAGGCCGGTGGGTTGCGGGGGCGCCGGGCCGGCG
ATCATAGGGACAGGGGCAAGAACAGCGGCGACGACGGCAGTGGAAGGCCT
TTCCGCTCATCCATCACGGCTAAAGACGCGGTCGGGTCATCGTGCTCCCC
ACCTTCTTCGCGCTTGCGCTTTCGTTTTCCTCGTCGAGAACCGTACCAAC
ACAAGTCGGCGGCGCTCTCCGCCTCCGCCACACAAGCCACTCGCAGCGGC
ACGCGGGGTGAACGGACGAGGCCACCCCTCTCGCTCGCCCTCACCCGCCC
TTCTTCCAGCGACTACCCTCTGAGTGCGAGGTCGCCGCTGAAGCTCTCTC
CGCACGCCGCTCTACGCTGGGCTCCTCCGGCGGCGCCGGCGGGTCAGCAC
CGCTTCCGGCGGGGCTCTGGCCCTGTGCGGTGGTCGCTCGACCGCGGACG
AGCGGCAGTGGTGGGGCCGCCTGCGGTGGTACCGCAAGGGACGGGAACGT
TGGCATCACCTGCCGCGGCGGCTGCCGCTCTCGGCAAGGGTTCGGGGACG
CTTGCCCTGGCGGGAGCCGGGGGCGGCGGCAGCGGCAGCGGCAACCGTCT
CGCGGAGTCTTCGTCCTCCGTTTGCGGCGTGGGTACTCTGGCTGTTTGGA
GTCGTTCGAGTACATCGTAG
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