mRNA_H-canaliculatus_F_contig12712.2264.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12712.2264.1
Unique NamemRNA_H-canaliculatus_F_contig12712.2264.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12712.2264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12712contigH-canaliculatus_F_contig12712:753..1190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size440
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.0728242-CDS-H-canaliculatus_F_contig12712:752..10671622928993.0728242-CDS-H-canaliculatus_F_contig12712:752..1067Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12712 753..1067 +
1696845641.9710283-CDS-H-canaliculatus_F_contig12712:752..10671696845641.9710283-CDS-H-canaliculatus_F_contig12712:752..1067Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12712 753..1067 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.0922954-UTR-H-canaliculatus_F_contig12712:1067..11901622928993.0922954-UTR-H-canaliculatus_F_contig12712:1067..1190Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12712 1068..1190 +
1696845641.985946-UTR-H-canaliculatus_F_contig12712:1067..11901696845641.985946-UTR-H-canaliculatus_F_contig12712:1067..1190Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12712 1068..1190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12712.2264.1prot_H-canaliculatus_F_contig12712.2264.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12712 753..1067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12712.2264.1

>prot_H-canaliculatus_F_contig12712.2264.1 ID=prot_H-canaliculatus_F_contig12712.2264.1|Name=mRNA_H-canaliculatus_F_contig12712.2264.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=105bp
TALSTRSPFILSRANLRSNATKKRWTLRIEAKVRRVQAQTLPTCNPLHFT
TYSFRSSRRCFTADIAQETKSASLQVEAVYRTRYTLFQRQSTCKLQHKRF
SGNA*
back to top

mRNA from alignment at H-canaliculatus_F_contig12712:753..1190+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12712.2264.1 ID=mRNA_H-canaliculatus_F_contig12712.2264.1|Name=mRNA_H-canaliculatus_F_contig12712.2264.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=438bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12712:753..1190+ (Hapterophycus canaliculatus Oshoro5f female)
ACTGCTTTAAGTACTCGAAGTCCTTTCATTTTGTCAAGAGCCAACTTGCG
AAGCAATGCCACCAAGAAACGATGGACGTTGCGGATCGAGGCAAAGGTGA
GACGAGTTCAAGCACAAACACTTCCTACATGCAACCCGCTCCATTTTACT
ACCTACAGCTTCAGAAGTAGCCGAAGATGTTTCACTGCGGACATCGCACA
AGAGACAAAATCTGCATCCCTTCAAGTAGAAGCTGTGTATCGTACAAGGT
ACACGCTTTTTCAGAGACAAAGCACATGCAAGTTGCAACACAAGAGATTC
TCAGGCAACGCGTAAAAACAGGTAATGAATACGCGATGGTCTTCGAAAAC
AAAACAAACGTAATTTCACACTTGTGGAGGGAAGTCCTACAGCAGCCTCC
CCGCTGATGCTACGCCCGGACCGTTGTGTGTTCGTGGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12712:753..1190+

>mRNA_H-canaliculatus_F_contig12712.2264.1 ID=mRNA_H-canaliculatus_F_contig12712.2264.1|Name=mRNA_H-canaliculatus_F_contig12712.2264.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=630bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12712:753..1190+ (Hapterophycus canaliculatus Oshoro5f female)
ACTGCTTTAAGTACTCGAAGTCCTTTCATTTTGTCAAGAGCCAACTTGCG
AAGCAATGCCACCAAGAAACGATGGACGTTGCGGATCGAGGCAAAGGTGA
GACGAGTTCAAGCACAAACACTTCCTACATGCAACCCGCTCCATTTTACT
ACCTACAGCTTCAGAAGTAGCCGAAGATGTTTCACTGCGGACATCGCACA
AGAGACAAAATCTGCATCCCTTCAAGTAGAAGCTGTGTATCGTACAAGGT
ACACGCTTTTTCAGAGACAAAGCACATGCAAGTTGCAACACAAGAGATTC
TCAGGCAACGCGTAAACTGCTTTAAGTACTCGAAGTCCTTTCATTTTGTC
AAGAGCCAACTTGCGAAGCAATGCCACCAAGAAACGATGGACGTTGCGGA
TCGAGGCAAAGGTGAGACGAGTTCAAGCACAAACACTTCCTACATGCAAC
CCGCTCCATTTTACTACCTACAGCTTCAGAAGTAGCCGAAGATGTTTCAC
TGCGGACATCGCACAAGAGACAAAATCTGCATCCCTTCAAGTAGAAGCTG
TGTATCGTACAAGGTACACGCTTTTTCAGAGACAAAGCACATGCAAGTTG
CAACACAAGAGATTCTCAGGCAACGCGTAA
back to top