mRNA_H-canaliculatus_F_contig1270.2251.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1270.2251.1
Unique NamemRNA_H-canaliculatus_F_contig1270.2251.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1270.2251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1270contigH-canaliculatus_F_contig1270:2127..3157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_000830.1
Exons2
Model size956
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1270.2251.1prot_H-canaliculatus_F_contig1270.2251.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1270 2214..2828 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.297156-UTR-H-canaliculatus_F_contig1270:2126..22131622928991.297156-UTR-H-canaliculatus_F_contig1270:2126..2213Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1270 2127..2213 +
1696845641.2156477-UTR-H-canaliculatus_F_contig1270:2126..22131696845641.2156477-UTR-H-canaliculatus_F_contig1270:2126..2213Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1270 2127..2213 +
1622928991.362907-UTR-H-canaliculatus_F_contig1270:2828..31571622928991.362907-UTR-H-canaliculatus_F_contig1270:2828..3157Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1270 2829..3157 +
1696845641.2579484-UTR-H-canaliculatus_F_contig1270:2828..31571696845641.2579484-UTR-H-canaliculatus_F_contig1270:2828..3157Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1270 2829..3157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.3146503-CDS-H-canaliculatus_F_contig1270:2213..25201622928991.3146503-CDS-H-canaliculatus_F_contig1270:2213..2520Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1270 2214..2520 +
1696845641.2287066-CDS-H-canaliculatus_F_contig1270:2213..25201696845641.2287066-CDS-H-canaliculatus_F_contig1270:2213..2520Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1270 2214..2520 +
1622928991.330319-CDS-H-canaliculatus_F_contig1270:2595..28281622928991.330319-CDS-H-canaliculatus_F_contig1270:2595..2828Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1270 2596..2828 +
1696845641.2430055-CDS-H-canaliculatus_F_contig1270:2595..28281696845641.2430055-CDS-H-canaliculatus_F_contig1270:2595..2828Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1270 2596..2828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1270.2251.1

>prot_H-canaliculatus_F_contig1270.2251.1 ID=prot_H-canaliculatus_F_contig1270.2251.1|Name=mRNA_H-canaliculatus_F_contig1270.2251.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=180bp
MFADSCIKTKIECEHLKTFMWASKPVGHDSSCQSFLLTNASAYPFIRRTV
LRLSHGRVSFRPSNVLGVRCCAQDDEEEGGIPIPMASFGVGGSFGVGGKW
DEDLLPRPRFRRVAVVEFLRACPDQPFKAKRWVRSRNASGRYLGCCIFGG
DMRIVMLPKGISPVRLKCDVGDPWSSSTC*
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mRNA from alignment at H-canaliculatus_F_contig1270:2127..3157+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1270.2251.1 ID=mRNA_H-canaliculatus_F_contig1270.2251.1|Name=mRNA_H-canaliculatus_F_contig1270.2251.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1031bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1270:2127..3157+ (Hapterophycus canaliculatus Oshoro5f female)
GGGAAACGATAGGATGGAAACCGCGATGTGGCTGCGTTAAAGCACGTAGA
ATGTGCAAATTGTGGTGGTATCCTCTTTTTGTTTCGTATGTTCGCTGATT
CGTGCATAAAAACAAAGATCGAGTGCGAGCATCTGAAAACATTTATGTGG
GCCTCGAAACCGGTCGGACATGACTCATCTTGCCAGTCATTTCTACTCAC
AAATGCATCGGCTTACCCTTTCATCCGACGCACAGTCTTACGGCTGAGCC
ACGGGCGAGTCTCTTTCCGGCCTTCTAACGTACTTGGTGTTCGATGTTGC
GCCCAGGACGACGAGGAGGAAGGGGGCATCCCTATCCCGATGGCGAGCTT
TGGAGTCGGGGGCAGCTTTGGAGTCGGCGGCAAGTGGGACGAAGGGGGTC
GTTTCGATCTTCGATTGCCGTACGCCGACCAGGTGCGTGCGCGTCTTGGG
CCGTCCGTGCGCACCAGGAATTTGTTGCCGCGTCCGCGTTTTCGGCGGGT
AGCCGTGGTTGAATTCTTGCGCGCATGTCCGGATCAGCCGTTCAAAGCAA
AACGATGGGTTCGGAGCCGCAACGCTTCTGGACGATACCTGGGCTGTTGT
ATTTTTGGAGGCGATATGAGAATAGTTATGTTGCCCAAGGGTATCTCTCC
TGTTCGGTTGAAGTGCGACGTTGGGGACCCTTGGAGCAGCTCCACCTGTT
GAGGTGTAATCGACTAGTTGCGGGCGTTTCGGAGGGGAAGACAGAGGAGA
CCGCTGATGTTCGCCCTCTGACCTGCTCTCGTAGCGCCGGTCCTAGGAGA
TACAACCAAAAACCAAAATGATTGTGACGGCTTCCCGAATTTCGGGTCGT
CCTCGCGATTGCAACGGCTCAAGATGCTGTTCCGCGACGGAATTTTTTTC
GATGACGAAACCAGACGTGGCGCGTGTCGCTCACCTCACATCAACCGAAA
AACCCTATGCGGGGGTGGAACTTCGCTCACGACCCCGTGGCCAAGAAACT
CAACCGTGGTGTTCTGCAATCTCCCCTTACG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1270:2127..3157+

>mRNA_H-canaliculatus_F_contig1270.2251.1 ID=mRNA_H-canaliculatus_F_contig1270.2251.1|Name=mRNA_H-canaliculatus_F_contig1270.2251.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1080bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1270:2127..3157+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCGCTGATTCGTGCATAAAAACAAAGATCGAGTGCGAGCATCTGAA
AACATTTATGTGGGCCTCGAAACCGGTCGGACATGACTCATCTTGCCAGT
CATTTCTACTCACAAATGCATCGGCTTACCCTTTCATCCGACGCACAGTC
TTACGGCTGAGCCACGGGCGAGTCTCTTTCCGGCCTTCTAACGTACTTGG
TGTTCGATGTTGCGCCCAGGACGACGAGGAGGAAGGGGGCATCCCTATCC
CGATGGCGAGCTTTGGAGTCGGGGGCAGCTTTGGAGTCGGCGGCAAGTGG
GACGAAGATGTTCGCTGATTCGTGCATAAAAACAAAGATCGAGTGCGAGC
ATCTGAAAACATTTATGTGGGCCTCGAAACCGGTCGGACATGACTCATCT
TGCCAGTCATTTCTACTCACAAATGCATCGGCTTACCCTTTCATCCGACG
CACAGTCTTACGGCTGAGCCACGGGCGAGTCTCTTTCCGGCCTTCTAACG
TACTTGGTGTTCGATGTTGCGCCCAGGACGACGAGGAGGAAGGGGGCATC
CCTATCCCGATGGCGAGCTTTGGAGTCGGGGGCAGCTTTGGAGTCGGCGG
CAAGTGGGACGAAGATTTGTTGCCGCGTCCGCGTTTTCGGCGGGTAGCCG
TGGTTGAATTCTTGCGCGCATGTCCGGATCAGCCGTTCAAAGCAAAACGA
TGGGTTCGGAGCCGCAACGCTTCTGGACGATACCTGGGCTGTTGTATTTT
TGGAGGCGATATGAGAATAGTTATGTTGCCCAAGGGTATCTCTCCTGTTC
GGTTGAAGTGCGACGTTGGGGACCCTTGGAGCAGCTCCACCTGTTGAATT
TGTTGCCGCGTCCGCGTTTTCGGCGGGTAGCCGTGGTTGAATTCTTGCGC
GCATGTCCGGATCAGCCGTTCAAAGCAAAACGATGGGTTCGGAGCCGCAA
CGCTTCTGGACGATACCTGGGCTGTTGTATTTTTGGAGGCGATATGAGAA
TAGTTATGTTGCCCAAGGGTATCTCTCCTGTTCGGTTGAAGTGCGACGTT
GGGGACCCTTGGAGCAGCTCCACCTGTTGA
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