mRNA_H-canaliculatus_F_contig127.2247.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig127.2247.1
Unique NamemRNA_H-canaliculatus_F_contig127.2247.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig127.2247.1 vs. uniprot
Match: A0A6H5K2S4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2S4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.850e-17
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 MVAHHSVETHEALRPAMSWKDKQRKRMPAVDLDDNPFCVERRMNEEWHMMQLNR 162
            + A  S+E   A R AM+WKD+QR R+P VDLDDNPFCVERR NEEWHMMQLN+
Sbjct:    4 IAAGRSLEGQNAARLAMTWKDRQRTRVPVVDLDDNPFCVERRTNEEWHMMQLNK 57
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig127.2247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2S4_9PHAE4.850e-1768.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig127contigH-canaliculatus_F_contig127:21330..21494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size166
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928990.3354447-CDS-H-canaliculatus_F_contig127:21329..214941622928990.3354447-CDS-H-canaliculatus_F_contig127:21329..21494Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig127 21330..21494 +
1696845640.7042603-CDS-H-canaliculatus_F_contig127:21329..214941696845640.7042603-CDS-H-canaliculatus_F_contig127:21329..21494Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig127 21330..21494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig127.2247.1prot_H-canaliculatus_F_contig127.2247.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig127 21330..21494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig127.2247.1

>prot_H-canaliculatus_F_contig127.2247.1 ID=prot_H-canaliculatus_F_contig127.2247.1|Name=mRNA_H-canaliculatus_F_contig127.2247.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=55bp
MVAHHSVETHEALRPAMSWKDKQRKRMPAVDLDDNPFCVERRMNEEWHMM
QLNRA
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mRNA from alignment at H-canaliculatus_F_contig127:21330..21494+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig127.2247.1 ID=mRNA_H-canaliculatus_F_contig127.2247.1|Name=mRNA_H-canaliculatus_F_contig127.2247.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=165bp|location=Sequence derived from alignment at H-canaliculatus_F_contig127:21330..21494+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTGCACATCATTCTGTCGAAACGCACGAGGCCCTACGGCCGGCCAT
GTCGTGGAAAGATAAGCAACGCAAGAGGATGCCTGCGGTCGACCTAGACG
ACAACCCCTTTTGTGTCGAAAGGCGGATGAACGAGGAATGGCACATGATG
CAATTAAACAGGGCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig127:21330..21494+

>mRNA_H-canaliculatus_F_contig127.2247.1 ID=mRNA_H-canaliculatus_F_contig127.2247.1|Name=mRNA_H-canaliculatus_F_contig127.2247.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=330bp|location=Sequence derived from alignment at H-canaliculatus_F_contig127:21330..21494+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTGCACATCATTCTGTCGAAACGCACGAGGCCCTACGGCCGGCCAT
GTCGTGGAAAGATAAGCAACGCAAGAGGATGCCTGCGGTCGACCTAGACG
ACAACCCCTTTTGTGTCGAAAGGCGGATGAACGAGGAATGGCACATGATG
CAATTAAACAGGGCAATGGTTGCACATCATTCTGTCGAAACGCACGAGGC
CCTACGGCCGGCCATGTCGTGGAAAGATAAGCAACGCAAGAGGATGCCTG
CGGTCGACCTAGACGACAACCCCTTTTGTGTCGAAAGGCGGATGAACGAG
GAATGGCACATGATGCAATTAAACAGGGCA
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