mRNA_H-canaliculatus_F_contig12696.2243.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12696.2243.1
Unique NamemRNA_H-canaliculatus_F_contig12696.2243.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12696.2243.1 vs. uniprot
Match: Q8QNP5_ESV1K (EsV-1-16 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP5_ESV1K)

HSP 1 Score: 102 bits (253), Expect = 2.890e-25
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:   64 MPRTVELALKPGD-SIYILTEGALAFPADKRTPIKAIVGGCALSLLTYERVNRTFVEAA---ADFKKMLERFVYVP 279
            +PRTV +AL+PGD S+YI TEG LAFP DKRTP++AI  GCALSLL+Y+RV+RTFVE A    D+ KML+RFVY P
Sbjct:  103 LPRTVNVALEPGDTSVYIFTEGVLAFPVDKRTPLEAIGDGCALSLLSYKRVDRTFVEPAYEEVDYAKMLQRFVYTP 178
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BLAST of mRNA_H-canaliculatus_F_contig12696.2243.1 vs. uniprot
Match: D8LP55_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP55_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.080e-22
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:   64 MPRTVELALKPGD-SIYILTEGALAFPADKRTPIKAIVGGCALSLLTYERVNRTFVEAA---ADFKKMLERFVYVP 279
            +PRTV++AL+PGD S+YI TEG LA+P DKRTP++AI  GCALSLLT+ +V+R +VE A    D+ KML +F Y P
Sbjct:  103 LPRTVDVALEPGDTSVYIFTEGVLAYPVDKRTPLEAITNGCALSLLTFNKVDRAYVEPAYGEVDYAKMLAKFAYTP 178
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BLAST of mRNA_H-canaliculatus_F_contig12696.2243.1 vs. uniprot
Match: D7G322_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G322_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 6.300e-20
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   67 PRTVELALKPGDS-IYILTEGALAFPADKRTPIKAIVGGCALSLLTYERVNRTFVEAA---ADFKKMLERFVYVP 279
            PRTVE+AL+PGDS +YI T G +  P DKRTP++AI  GCALS++TY+RVNR  V+      D+ KML+RFVY P
Sbjct:  104 PRTVEVALEPGDSNVYIFTGGTMDLPCDKRTPLEAIGDGCALSIITYKRVNRKVVKVVDEGVDYAKMLQRFVYNP 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12696.2243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QNP5_ESV1K2.890e-2567.11EsV-1-16 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP55_ECTSI2.080e-2259.21EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
D7G322_ECTSI6.300e-2058.67EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12696contigH-canaliculatus_F_contig12696:1450..1739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionEsV-1-16 HNH nuclease
Ec32 orthologEc-06_006570.1
Exons2
Model size280
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928989.5515661-CDS-H-canaliculatus_F_contig12696:1449..16201622928989.5515661-CDS-H-canaliculatus_F_contig12696:1449..1620Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12696 1450..1620 -
1696845640.3919587-CDS-H-canaliculatus_F_contig12696:1449..16201696845640.3919587-CDS-H-canaliculatus_F_contig12696:1449..1620Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12696 1450..1620 -
1622928989.5669692-CDS-H-canaliculatus_F_contig12696:1631..17391622928989.5669692-CDS-H-canaliculatus_F_contig12696:1631..1739Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12696 1632..1739 -
1696845640.4045355-CDS-H-canaliculatus_F_contig12696:1631..17391696845640.4045355-CDS-H-canaliculatus_F_contig12696:1631..1739Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12696 1632..1739 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12696.2243.1prot_H-canaliculatus_F_contig12696.2243.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12696 1450..1739 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12696.2243.1

>prot_H-canaliculatus_F_contig12696.2243.1 ID=prot_H-canaliculatus_F_contig12696.2243.1|Name=mRNA_H-canaliculatus_F_contig12696.2243.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=93bp
AKRFLRRCSFYVNRAIGSKLRMPRTVELALKPGDSIYILTEGALAFPADK
RTPIKAIVGGCALSLLTYERVNRTFVEAAADFKKMLERFVYVP
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mRNA from alignment at H-canaliculatus_F_contig12696:1450..1739-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12696.2243.1 ID=mRNA_H-canaliculatus_F_contig12696.2243.1|Name=mRNA_H-canaliculatus_F_contig12696.2243.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=290bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12696:1450..1739- (Hapterophycus canaliculatus Oshoro5f female)
GCAAAACGATTCCTAAGAAGATGCAGTTTTTATGTGAATCGTGCCATCGG
TTCAAAACTGCGAATGCCGAGGACAGTTGAGCTCGCGCTGAAGCCGGGGG
ACTCTATCGTTTACTGAAGTATATTTTGACGGAGGGTGCATTGGCCTTTC
CGGCGGACAAGAGGACGCCAATCAAGGCAATTGTGGGAGGGTGTGCCCTT
TCGTTGCTCACGTACGAGCGCGTAAATCGAACGTTTGTAGAGGCGGCGGC
TGATTTTAAGAAAATGTTGGAAAGGTTTGTTTATGTGCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12696:1450..1739-

>mRNA_H-canaliculatus_F_contig12696.2243.1 ID=mRNA_H-canaliculatus_F_contig12696.2243.1|Name=mRNA_H-canaliculatus_F_contig12696.2243.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12696:1450..1739- (Hapterophycus canaliculatus Oshoro5f female)
GCAAAACGATTCCTAAGAAGATGCAGTTTTTATGTGAATCGTGCCATCGG
TTCAAAACTGCGAATGCCGAGGACAGTTGAGCTCGCGCTGAAGCCGGGGG
ACTCTATCGCAAAACGATTCCTAAGAAGATGCAGTTTTTATGTGAATCGT
GCCATCGGTTCAAAACTGCGAATGCCGAGGACAGTTGAGCTCGCGCTGAA
GCCGGGGGACTCTATCTATATTTTGACGGAGGGTGCATTGGCCTTTCCGG
CGGACAAGAGGACGCCAATCAAGGCAATTGTGGGAGGGTGTGCCCTTTCG
TTGCTCACGTACGAGCGCGTAAATCGAACGTTTGTAGAGGCGGCGGCTGA
TTTTAAGAAAATGTTGGAAAGGTTTGTTTATGTGCCGTATATTTTGACGG
AGGGTGCATTGGCCTTTCCGGCGGACAAGAGGACGCCAATCAAGGCAATT
GTGGGAGGGTGTGCCCTTTCGTTGCTCACGTACGAGCGCGTAAATCGAAC
GTTTGTAGAGGCGGCGGCTGATTTTAAGAAAATGTTGGAAAGGTTTGTTT
ATGTGCCG
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