mRNA_H-canaliculatus_F_contig12693.2242.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12693.2242.1
Unique NamemRNA_H-canaliculatus_F_contig12693.2242.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12693.2242.1 vs. uniprot
Match: A0A6H5JUH8_9PHAE (UPF0020 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH8_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 3.900e-54
Identity = 89/96 (92.71%), Postives = 93/96 (96.88%), Query Frame = 1 
Query:   34 QHVYFGRVVAEGNRELVAAFDLKKRPYLGPTSMDNELALVMANMALAGKGKLCFDPFVGTGSILVACAYFGGVCTGTDIDVRVLKGKKGRNVFTNF 321
            +HVYFGR VA+GNR+LVAAFDLKKRPYLGPTSMDNELALVMANMAL GKGKLCFDPFVGTGSILVACA+FGGVC GTDIDVRVLKGKKGRNVFTNF
Sbjct:  171 EHVYFGREVAQGNRDLVAAFDLKKRPYLGPTSMDNELALVMANMALVGKGKLCFDPFVGTGSILVACAHFGGVCVGTDIDVRVLKGKKGRNVFTNF 266
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BLAST of mRNA_H-canaliculatus_F_contig12693.2242.1 vs. uniprot
Match: D8LT48_ECTSI (UPF0020 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT48_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 6.650e-53
Identity = 88/96 (91.67%), Postives = 93/96 (96.88%), Query Frame = 1 
Query:   34 QHVYFGRVVAEGNRELVAAFDLKKRPYLGPTSMDNELALVMANMALAGKGKLCFDPFVGTGSILVACAYFGGVCTGTDIDVRVLKGKKGRNVFTNF 321
            +HVYFGR VA+GNR+LVAAFDLKKRPYLGPTSMDNELALVMANMAL GKGKLCFDPFVGTGSILVACA+FGGVC GTDIDVRVLKGKKGR+VFTNF
Sbjct:  171 EHVYFGREVAQGNRDLVAAFDLKKRPYLGPTSMDNELALVMANMALVGKGKLCFDPFVGTGSILVACAHFGGVCVGTDIDVRVLKGKKGRSVFTNF 266
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BLAST of mRNA_H-canaliculatus_F_contig12693.2242.1 vs. uniprot
Match: D5G9E9_TUBMM (UPF0020 domain-containing protein n=3 Tax=Tuber TaxID=36048 RepID=D5G9E9_TUBMM)

HSP 1 Score: 130 bits (328), Expect = 5.410e-34
Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = 1 
Query:    1 LENINETVFSFQHVYFGRVVAEGNRELVAAFDLKKRPYLGPTSMDNELALVMANMALAGKGKLCFDPFVGTGSILVACAYFGGVCTGTDIDVRVLKGKKGRNVFTNF 321
            LE   E V +   ++FGR V  G+R LV  +DLKKR Y+G TSMD ELALV ANMAL   GK+ FDPFVGTGS +V+CA+FGG+C G+DID R ++GK GR+V +NF
Sbjct:  150 LEEFPEKVATPTRIFFGRRVGSGSRALVERYDLKKRHYIGTTSMDAELALVTANMALVAPGKIAFDPFVGTGSFVVSCAHFGGLCLGSDIDGRQIRGKNGRSVLSNF 256
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BLAST of mRNA_H-canaliculatus_F_contig12693.2242.1 vs. uniprot
Match: A0A2T6ZMJ5_TUBBO (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tuber borchii TaxID=42251 RepID=A0A2T6ZMJ5_TUBBO)

HSP 1 Score: 129 bits (325), Expect = 1.470e-33
Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = 1 
Query:    1 LENINETVFSFQHVYFGRVVAEGNRELVAAFDLKKRPYLGPTSMDNELALVMANMALAGKGKLCFDPFVGTGSILVACAYFGGVCTGTDIDVRVLKGKKGRNVFTNF 321
            LE   E V +   ++FGR V  G+R LV  +DLKKR Y+G TSMD ELALV ANMAL   GK+ FDPFVGTGS +V+CA+FGG+C G+DID R ++GK GR+V +NF
Sbjct:  150 LEEFPEKVATPTRIFFGRRVGGGSRALVERYDLKKRHYIGTTSMDAELALVTANMALVAPGKVAFDPFVGTGSFVVSCAHFGGLCLGSDIDGRQIRGKSGRSVLSNF 256
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BLAST of mRNA_H-canaliculatus_F_contig12693.2242.1 vs. uniprot
Match: A0A7S3PME6_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PME6_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.000e-31
Identity = 59/111 (53.15%), Postives = 76/111 (68.47%), Query Frame = 1 
Query:    1 LENINETVFSFQ----HVYFGRVVAEGNRELVAAFDLKKRPYLGPTSMDNELALVMANMALAGKGKLCFDPFVGTGSILVACAYFGGVCTGTDIDVRVLKGKKGRNVFTNF 321
            LEN+    F+      HVYFGR+VA G  +++    LKKR +LGPTS + EL+ +MAN A AGKGK+  DPFVGTGS+L+ C YFG  C G DID R+L+GK  +N F+NF
Sbjct:  175 LENVQPPEFNASGIPFHVYFGRLVASGIYDIIDKMTLKKRNFLGPTSTETELSFLMANQAKAGKGKIILDPFVGTGSLLIPCTYFGSYCYGADIDARILEGKNSKNAFSNF 285
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BLAST of mRNA_H-canaliculatus_F_contig12693.2242.1 vs. uniprot
Match: A0A3N4JMB5_9PEZI (tRNA guanosine-2'-O-methyltransferase n=1 Tax=Choiromyces venosus 120613-1 TaxID=1336337 RepID=A0A3N4JMB5_9PEZI)

HSP 1 Score: 124 bits (312), Expect = 1.150e-31
Identity = 58/94 (61.70%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:   40 VYFGRVVAEGNRELVAAFDLKKRPYLGPTSMDNELALVMANMALAGKGKLCFDPFVGTGSILVACAYFGGVCTGTDIDVRVLKGKKGRNVFTNF 321
            ++FGR V  G+R LV  +DLKKR Y+G TSMD ELALV  NMAL   GK+ FDPFVGTGS +V+CA+FGG+C G+DID R ++GK+GR V +NF
Sbjct:  164 IFFGRRVGGGSRGLVEKYDLKKRHYIGTTSMDAELALVTVNMALVAPGKIAFDPFVGTGSFVVSCAHFGGMCLGSDIDGRQIRGKQGRGVLSNF 257
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BLAST of mRNA_H-canaliculatus_F_contig12693.2242.1 vs. uniprot
Match: K8Z4J0_NANGC (UPF0020 domain-containing protein (Fragment) n=4 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z4J0_NANGC)

HSP 1 Score: 122 bits (305), Expect = 5.880e-31
Identity = 63/107 (58.88%), Postives = 76/107 (71.03%), Query Frame = 1 
Query:   13 NETVFSFQHVYFGRVV---AEGNRELVAAFDLKKRPYLGPTSMDNELALVMANMALAGKGKLCFDPFVGTGSILVACAYFGGVCTGTDIDVRVLKGKK-GRNVFTNF 321
            N+T  +  H+YFGR +   A   RE V   DLK+R YLGPTS+DNELAL+MA+ A    G +  DPFVGTGSILVAC  FG  C GTDID+RVL+GK+ GRNV+ NF
Sbjct:  158 NDTDPTPDHLYFGRAITSRASRGRERVGKGDLKRRAYLGPTSLDNELALLMASFAQIRPGSMVLDPFVGTGSILVACTQFGAFCVGTDIDIRVLRGKEEGRNVYANF 264
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BLAST of mRNA_H-canaliculatus_F_contig12693.2242.1 vs. uniprot
Match: A0A899FQK8_9ASCO (Uncharacterized protein n=1 Tax=Pneumocystis wakefieldiae TaxID=38082 RepID=A0A899FQK8_9ASCO)

HSP 1 Score: 121 bits (304), Expect = 8.850e-31
Identity = 58/100 (58.00%), Postives = 77/100 (77.00%), Query Frame = 1 
Query:   19 TVFSFQHVYFGRVVAEGNRELVAAFDLKKRPYLGPTSMDNELALVMANMALAGKGKLCFDPFVGTGSILVACAYFGGVCTGTDIDVRVLKGKKGRNVFTN 318
            TV S +HV+ GR +A+ +R +V  F+LKKR Y+G TSMD EL+L++AN ALA KGKL +DPFVGTGSIL+ACAY+     GTDID R+L G+ GR++ +N
Sbjct:  149 TVDSLKHVFMGRQIAKSSRHIVNRFNLKKRRYIGNTSMDAELSLIIANQALAEKGKLVYDPFVGTGSILLACAYYEATIMGTDIDGRLLHGQNGRSIHSN 248
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BLAST of mRNA_H-canaliculatus_F_contig12693.2242.1 vs. uniprot
Match: A0A836CPF8_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPF8_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.260e-30
Identity = 64/95 (67.37%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:   40 VYFGRVVAEGNRELVAAFDLKKRPYLGPTSMDNELALVMANMALAGKGKLCFDPFVGTGSILVACAYFGGVCTGTDIDVRVLKGK-KGRNVFTNF 321
            VYFGR V + NR LV A  L  R YLGPTSMDNEL+LVMANM  AG G L  DPFVGTGSILVA A FG VC GTDID R L G+  G N+F+NF
Sbjct:  170 VYFGREVGQSNRRLVGARSLSTRAYLGPTSMDNELSLVMANMVHAGPGTLILDPFVGTGSILVAAAQFGAVCVGTDIDPRPLHGRGDGANIFSNF 264
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BLAST of mRNA_H-canaliculatus_F_contig12693.2242.1 vs. uniprot
Match: A0A094CCV2_9PEZI (UPF0020 domain-containing protein (Fragment) n=2 Tax=unclassified Pseudogymnoascus TaxID=2637121 RepID=A0A094CCV2_9PEZI)

HSP 1 Score: 117 bits (292), Expect = 3.490e-30
Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:   34 QHVYFGRVVAEGNRELVAAFDLKKRPYLGPTSMDNELALVMANMALAGKGKLCFDPFVGTGSILVACAYFGGVCTGTDIDVRVLKGKKGRNVFTNF 321
            QH+Y GR+V    RE+V  +DLKKR Y+  TSMD ELAL+ AN+ALA  G L +DPFVGTGS  VACA+FG +  G+DID R ++GK GRN+  NF
Sbjct:   35 QHLYLGRLVGTSQREIVGKYDLKKRRYISTTSMDAELALITANIALARPGALFYDPFVGTGSFPVACAHFGALAFGSDIDGRAIRGKGGRNLRANF 130
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12693.2242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUH8_9PHAE3.900e-5492.71UPF0020 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LT48_ECTSI6.650e-5391.67UPF0020 domain-containing protein (Fragment) n=1 T... [more]
D5G9E9_TUBMM5.410e-3458.88UPF0020 domain-containing protein n=3 Tax=Tuber Ta... [more]
A0A2T6ZMJ5_TUBBO1.470e-3358.88S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S3PME6_9STRA1.000e-3153.15Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A3N4JMB5_9PEZI1.150e-3161.70tRNA guanosine-2'-O-methyltransferase n=1 Tax=Choi... [more]
K8Z4J0_NANGC5.880e-3158.88UPF0020 domain-containing protein (Fragment) n=4 T... [more]
A0A899FQK8_9ASCO8.850e-3158.00Uncharacterized protein n=1 Tax=Pneumocystis wakef... [more]
A0A836CPF8_9STRA1.260e-3067.37S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A094CCV2_9PEZI3.490e-3058.33UPF0020 domain-containing protein (Fragment) n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12693contigH-canaliculatus_F_contig12693:144..1321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.3
Seed ortholog evalue1.8e-45
Seed eggNOG ortholog2880.D8LT48
Preferred nameTRMT11
KEGG koko:K02995,ko:K15430
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0001510,GO:0002940,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004809,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0043528,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1902494,GO:1990234
EggNOG free text desc.tRNA (guanine-N2-)-methyltransferase activity
EggNOG OGsCOG1041@1,KOG2671@2759
EC2.1.1.214
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928989.4836202-CDS-H-canaliculatus_F_contig12693:143..3711622928989.4836202-CDS-H-canaliculatus_F_contig12693:143..371Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12693 144..371 +
1696845640.3692946-CDS-H-canaliculatus_F_contig12693:143..3711696845640.3692946-CDS-H-canaliculatus_F_contig12693:143..371Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12693 144..371 +
1622928989.5010672-CDS-H-canaliculatus_F_contig12693:1228..13211622928989.5010672-CDS-H-canaliculatus_F_contig12693:1228..1321Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12693 1229..1321 +
1696845640.3801582-CDS-H-canaliculatus_F_contig12693:1228..13211696845640.3801582-CDS-H-canaliculatus_F_contig12693:1228..1321Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12693 1229..1321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12693.2242.1prot_H-canaliculatus_F_contig12693.2242.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12693 144..1321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12693.2242.1

>prot_H-canaliculatus_F_contig12693.2242.1 ID=prot_H-canaliculatus_F_contig12693.2242.1|Name=mRNA_H-canaliculatus_F_contig12693.2242.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=107bp
LENINETVFSFQHVYFGRVVAEGNRELVAAFDLKKRPYLGPTSMDNELAL
VMANMALAGKGKLCFDPFVGTGSILVACAYFGGVCTGTDIDVRVLKGKKG
RNVFTNF
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mRNA from alignment at H-canaliculatus_F_contig12693:144..1321+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12693.2242.1 ID=mRNA_H-canaliculatus_F_contig12693.2242.1|Name=mRNA_H-canaliculatus_F_contig12693.2242.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1178bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12693:144..1321+ (Hapterophycus canaliculatus Oshoro5f female)
CTCGAAAATATCAACGAAACGGTGTTTTCCTTCCAGCACGTCTACTTCGG
GCGGGTGGTGGCCGAGGGCAACCGCGAGCTGGTTGCTGCCTTCGACCTCA
AGAAGAGGCCCTACCTCGGCCCCACGTCCATGGACAACGAGCTCGCGCTG
GTGATGGCAAACATGGCCCTCGCCGGAAAAGGGAAGCTTTGCTTCGACCC
CTTCGTGGGGACGGGATCGATCCTGGTGGTGAGAGCCGGTCGGCCGGGGG
CGGGATAAGAAAACGCGTGCGTGTAGGATCTGGAAGGGATGTGCTTAAAT
GGTTAGTCTTGGTCTGTCTTCGTGCCAGGTGCTTAGCGGGATCAAGACGG
GGAAGACAGCAGAGAATGTGTGAGAGGTAAACAAGTGTTTGCCGCTGTTC
CAGGCTTGCAAGGTCTGCGCGAAGCACTGGTCTACGCGAAGCACTGGTCG
GGCGTGCACGCGAGGGGGTTAGGGAGTAGGGGTGGGTGGGACAGAGAAGA
AGTTGCGGTGTTTGGCTTTCTTGGTCGTGTTCAAGCGGGACTGCTACCCG
GGGGTCTTAAATGCCAGATGGAGGCGAGTTCGACGGCAAAGCGCTGCGTT
GGGCATCGGGATCAATCCGAAAAGTTGAGCCTCCTTCCTATCTCGCCGTC
TCCTTTTTCAAGCGCTGGATGCTGCCGCTTCCGGGGTCACGCGGCGGCGC
CAGTGCGCCGGTTTTGCCACAGACGCGGAAGGTTCATTGCTTACCCTTGC
AGCATTTGTTGGTCCGTTCCCTGGCTGTCGTGGTCGAAGTTTCGTTCCGA
TTCGACCCCGCTTTTTTCTGTTTCTTGCGCCTGCCTTTGGTCGCATAGCC
CCCCTGAGATCTCGCAAATCGTCTCCCACAAAGTGCATGCTAAGGGATTG
CCAAGATGCTCTGAAAGAAGAGCTTACATCATACTTGGTGGAAAAACAGC
ACGAGGCAAGCCGCTGTGCACAGCCTTACTTACCCTGCCCCCCTCTCCCG
CCCTCCGCGTGCCCCCTTTCTGCACCACGCTCGGCGCGCGCGGGTGTGCC
CCGCAACAACAAAAATACAAAATCTGTGCGGGCAGGCTTGCGCATACTTC
GGGGGCGTCTGCACGGGCACGGACATCGACGTGCGCGTGCTGAAGGGAAA
GAAAGGGAGAAACGTCTTCACCAACTTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12693:144..1321+

>mRNA_H-canaliculatus_F_contig12693.2242.1 ID=mRNA_H-canaliculatus_F_contig12693.2242.1|Name=mRNA_H-canaliculatus_F_contig12693.2242.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12693:144..1321+ (Hapterophycus canaliculatus Oshoro5f female)
CTCGAAAATATCAACGAAACGGTGTTTTCCTTCCAGCACGTCTACTTCGG
GCGGGTGGTGGCCGAGGGCAACCGCGAGCTGGTTGCTGCCTTCGACCTCA
AGAAGAGGCCCTACCTCGGCCCCACGTCCATGGACAACGAGCTCGCGCTG
GTGATGGCAAACATGGCCCTCGCCGGAAAAGGGAAGCTTTGCTTCGACCC
CTTCGTGGGGACGGGATCGATCCTGGTGCTCGAAAATATCAACGAAACGG
TGTTTTCCTTCCAGCACGTCTACTTCGGGCGGGTGGTGGCCGAGGGCAAC
CGCGAGCTGGTTGCTGCCTTCGACCTCAAGAAGAGGCCCTACCTCGGCCC
CACGTCCATGGACAACGAGCTCGCGCTGGTGATGGCAAACATGGCCCTCG
CCGGAAAAGGGAAGCTTTGCTTCGACCCCTTCGTGGGGACGGGATCGATC
CTGGTGGCTTGCGCATACTTCGGGGGCGTCTGCACGGGCACGGACATCGA
CGTGCGCGTGCTGAAGGGAAAGAAAGGGAGAAACGTCTTCACCAACTTCG
CTTGCGCATACTTCGGGGGCGTCTGCACGGGCACGGACATCGACGTGCGC
GTGCTGAAGGGAAAGAAAGGGAGAAACGTCTTCACCAACTTC
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