mRNA_H-canaliculatus_F_contig12691.2240.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12691.2240.1
Unique NamemRNA_H-canaliculatus_F_contig12691.2240.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12691.2240.1 vs. uniprot
Match: D7G8K5_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K5_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.330e-33
Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 1 
Query:   97 LAFLDAQIRKERRAEPCYASLLRSTTEVMRQNNPRWAAAEDKGKPAKSYITGARRTQLKGALQTRLTEEEKKRVRRAGEKGEKKT 351
            LAFLDAQIRKERRAEPCYASLLRSTT+ MRQNNPRWAAA+DKGKPA+S ITGARR QLKGALQTRLTEEEKKR + + +KGEKK+
Sbjct: 1158 LAFLDAQIRKERRAEPCYASLLRSTTDAMRQNNPRWAAAQDKGKPARSAITGARRAQLKGALQTRLTEEEKKRGKSSADKGEKKS 1242
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BLAST of mRNA_H-canaliculatus_F_contig12691.2240.1 vs. uniprot
Match: A0A6H5KL97_9PHAE (R3H domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL97_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 3.220e-33
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:   97 LAFLDAQIRKERRAEPCYASLLRSTTEVMRQNNPRWAAAEDKGKPAKSYITGARRTQLKGALQTRLTEEEKKRVRRAGEKGEK 345
            LAFLDAQIRKERRAEPCYASLLRSTT+ MRQNNPRWAAA+D+GKPA+S ITGARR QLKGALQTRLTEEEKKR + + +KGEK
Sbjct:  454 LAFLDAQIRKERRAEPCYASLLRSTTDAMRQNNPRWAAAQDRGKPARSAITGARRAQLKGALQTRLTEEEKKRGKSSADKGEK 536
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BLAST of mRNA_H-canaliculatus_F_contig12691.2240.1 vs. uniprot
Match: A0A835Z7I8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.920e-6
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   79 DNDDDDLAFLDAQIRKERRAEPCYASLLRSTTEVMRQNNPRWAAAEDKGKPAKSYITGARRTQLKGALQTRLTEEEKKRV 318
            D++ D++AFLDA+I+  RR EPCYA++LR TT   R+ NP W        P KS     +R  L   L  +L E+ K+R 
Sbjct: 1031 DDEFDEMAFLDAEIKNNRRGEPCYANVLRMTTGAFREQNPSWD-------PNKSVKQQKKRGALATELNKKLQEQAKQRA 1103
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12691.2240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G8K5_ECTSI1.330e-3384.71R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KL97_9PHAE3.220e-3384.34R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z7I8_9STRA9.920e-641.25P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12691contigH-canaliculatus_F_contig12691:91..1093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog2880.D7G8K5
Preferred nameIGHMBP2
KEGG koko:K19036,ko:K19783
GOsGO:0000049,GO:0000122,GO:0000166,GO:0000228,GO:0000278,GO:0000976,GO:0000977,GO:0000981,GO:0000982,GO:0001012,GO:0001067,GO:0001078,GO:0001227,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003700,GO:0003723,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006310,GO:0006355,GO:0006357,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0008026,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022402,GO:0022607,GO:0022616,GO:0030154,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032574,GO:0032575,GO:0032991,GO:0033202,GO:0033203,GO:0033260,GO:0033267,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036477,GO:0042623,GO:0042995,GO:0043005,GO:0043021,GO:0043022,GO:0043025,GO:0043043,GO:0043139,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043603,GO:0043604,GO:0043621,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044463,GO:0044464,GO:0044786,GO:0044877,GO:0045892,GO:0045934,GO:0046483,GO:0048471,GO:0048513,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050905,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051276,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097458,GO:0120025,GO:0120038,GO:0140097,GO:0140098,GO:0140110,GO:0150034,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902679,GO:1902969,GO:1902983,GO:1903047,GO:1903459,GO:1903506,GO:1903507,GO:1990837,GO:1990904,GO:1990955,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.ATP-dependent 5'-3' RNA helicase activity
EggNOG OGsCOG1112@1,KOG1803@2759
EC3.6.4.12,3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03012,ko03032
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size1003
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12691.2240.1prot_H-canaliculatus_F_contig12691.2240.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12691 271..444 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928989.3228378-UTR-H-canaliculatus_F_contig12691:90..2701622928989.3228378-UTR-H-canaliculatus_F_contig12691:90..270Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12691 91..270 +
1696845640.3105922-UTR-H-canaliculatus_F_contig12691:90..2701696845640.3105922-UTR-H-canaliculatus_F_contig12691:90..270Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12691 91..270 +
1622928989.3576667-UTR-H-canaliculatus_F_contig12691:444..10931622928989.3576667-UTR-H-canaliculatus_F_contig12691:444..1093Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12691 445..1093 +
1696845640.3333285-UTR-H-canaliculatus_F_contig12691:444..10931696845640.3333285-UTR-H-canaliculatus_F_contig12691:444..1093Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12691 445..1093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928989.3406498-CDS-H-canaliculatus_F_contig12691:270..4441622928989.3406498-CDS-H-canaliculatus_F_contig12691:270..444Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12691 271..444 +
1696845640.3247595-CDS-H-canaliculatus_F_contig12691:270..4441696845640.3247595-CDS-H-canaliculatus_F_contig12691:270..444Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12691 271..444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12691.2240.1

>prot_H-canaliculatus_F_contig12691.2240.1 ID=prot_H-canaliculatus_F_contig12691.2240.1|Name=mRNA_H-canaliculatus_F_contig12691.2240.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp
MRQNNPRWAAAEDKGKPAKSYITGARRTQLKGALQTRLTEEEKKRVRRAG
EKGEKKT*
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mRNA from alignment at H-canaliculatus_F_contig12691:91..1093+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12691.2240.1 ID=mRNA_H-canaliculatus_F_contig12691.2240.1|Name=mRNA_H-canaliculatus_F_contig12691.2240.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1003bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12691:91..1093+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGGCGCTTGTGGGGGCGGCAAGAGTAAGCACAAGGGTGCCGTCAAGGG
TTCCAGCGCCGAAGGCGACGTGGGCGACGACAACGACGACGACGACCTGG
CTTTCCTCGACGCCCAGATCAGGAAAGAGCGCCGCGCCGAGCCTTGCTAC
GCCTCGCTGCTGCGGTCCACCACCGAGGTGATGCGGCAGAACAACCCCCG
CTGGGCGGCCGCGGAGGATAAGGGCAAGCCGGCCAAGTCGTACATCACGG
GCGCGCGGAGGACGCAGCTGAAGGGGGCCCTGCAGACGCGACTGACGGAG
GAGGAGAAAAAGAGAGTCAGGCGCGCCGGGGAGAAGGGAGAGAAGAAAAC
CTAGCGCCCCTGCGGCTGGGGGAGTCTAGCCCGTTTTCGGGGGAACCGTA
TCCTGTTAACTTGTCGCAACGTAAGCGCAGCGCATCCTGTATGCAGGTCG
GAACAAAGTACCTGTCCGCGCTAGTGCTGTGCCCCGTCGTCGCTCCTGCC
CGGGTACGAGTCTGAGCCATCAACCCGCGGGTGTCGGGGAGCCGGGAGCC
GGGAGTCGGGTGCCCGCGTACCCGGCAAATTCTTTAAACAGCGGGACAGC
CTTTTGGAGGTCAAATTATTGCCAGCAAAAAATTCTGCGGAGCCCCCGAC
GGCAGCACAGAAGCCCAAAAACAGGCGGTATTGCGGTTACTTTAGCTCCC
CTTTCCTCTGTGATGATGTCTCGGATATCAAGAAGATATTCGGAGGTGAA
TTATGTTGTGTTTGCTTGAAATATTTTGCGATTCAAGCTTCAAACATTTT
TGCGTTTCAAGCTTGAAACTATCTCCTCGCGGAGGTGTCCGCCCTCAAGC
AGTGCACCGCTGCTGGTGCTGCTGCAGGCAGAAGTGCTGCGGTTGCTACT
TTTTCCTGTTATGACATCGGTGACGCGTATACTGAGATCTGATTGGTCGT
CTTGATGCACGAAGCCCCTTCTCAACCTGAGGTACCCTCCAATACAATTC
ACG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12691:91..1093+

>mRNA_H-canaliculatus_F_contig12691.2240.1 ID=mRNA_H-canaliculatus_F_contig12691.2240.1|Name=mRNA_H-canaliculatus_F_contig12691.2240.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12691:91..1093+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGGCAGAACAACCCCCGCTGGGCGGCCGCGGAGGATAAGGGCAAGCC
GGCCAAGTCGTACATCACGGGCGCGCGGAGGACGCAGCTGAAGGGGGCCC
TGCAGACGCGACTGACGGAGGAGGAGAAAAAGAGAGTCAGGCGCGCCGGG
GAGAAGGGAGAGAAGAAAACCTAGATGCGGCAGAACAACCCCCGCTGGGC
GGCCGCGGAGGATAAGGGCAAGCCGGCCAAGTCGTACATCACGGGCGCGC
GGAGGACGCAGCTGAAGGGGGCCCTGCAGACGCGACTGACGGAGGAGGAG
AAAAAGAGAGTCAGGCGCGCCGGGGAGAAGGGAGAGAAGAAAACCTAG
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