mRNA_H-canaliculatus_F_contig12689.2233.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12689.2233.1
Unique NamemRNA_H-canaliculatus_F_contig12689.2233.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12689.2233.1 vs. uniprot
Match: D8LHU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU6_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.430e-49
Identity = 93/103 (90.29%), Postives = 96/103 (93.20%), Query Frame = 1 
Query:    1 ALCQQTLDDWTAKFAPLGIRLAELTGDS-----KGSLVSLRDLASADIILTTPEKWDSVTRRWKEHAFLVGTVALVLVDEVHTIGEERGATLEVILARMKMVS 294
            ALCQQTLDDWTAKF+PLGIRLAELT DS     KGS VSLRDLASAD+ILTTPEKWDS+TRRWKEHAFLVGTVALVLVDEVHTIGEERGATLEVILARMKMVS
Sbjct:  335 ALCQQTLDDWTAKFSPLGIRLAELTSDSTSGPSKGS-VSLRDLASADVILTTPEKWDSITRRWKEHAFLVGTVALVLVDEVHTIGEERGATLEVILARMKMVS 436
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12689.2233.1 vs. uniprot
Match: A0A836C995_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C995_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.960e-35
Identity = 69/98 (70.41%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:    1 ALCQQTLDDWTAKFAPLGIRLAELTGDSKGSL--VSLRDLASADIILTTPEKWDSVTRRWKEHAFLVGTVALVLVDEVHTIGEE-RGATLEVILARMK 285
            ALCQQTLD WTAKFAPLG+RLAE+TGDS G +   +LRD+A+ADIILTTPEKWDS TR   E AFL+G+V L+LVDEVH + E+ RGATLE+I+ RMK
Sbjct:  148 ALCQQTLDQWTAKFAPLGLRLAEVTGDSAGPIGAAALRDIAAADIILTTPEKWDSATRMSHERAFLIGSVRLLLVDEVHMLSEDGRGATLEMIITRMK 245
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12689.2233.1 vs. uniprot
Match: A0A0A9XP94_LYGHE (Putative ATP-dependent DNA helicase HFM1 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XP94_LYGHE)

HSP 1 Score: 116 bits (291), Expect = 1.390e-30
Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:    1 ALCQQTLDDWTAKFAPLGIRLAELTGDSKGSLVSLRDLASADIILTTPEKWDSVTRRWKEHAFLVGTVALVLVDEVHTIGEER-GATLEVILARMKMV 291
            ALC +   DWT+KF  LGIR AE+TGDS   LV L+ + + D+ILTTPEKWDS+TRRWK+HA LV  + L L+DEVH + EER G TLE +++RMK V
Sbjct:   92 ALCSERYSDWTSKFRSLGIRTAEVTGDST-DLVDLKTIENLDLILTTPEKWDSMTRRWKDHAGLVQLIKLFLIDEVHLLNEERRGPTLEAVVSRMKAV 188
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12689.2233.1 vs. uniprot
Match: A0A6H5KHN0_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN0_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 7.100e-30
Identity = 64/84 (76.19%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:    1 ALCQQTLDDWTAKFAPLGIRLAELTGDS-----KGSLVSLRDLASADIILTTPEKWDSVTRRWKEHAFLVGTVALVLVDEVHTI 237
            ALCQQTLDDWTAKF+PLGIRLAELT DS     KGS VSLRDLASAD+ILTTPEKWDS+TRRWKEHAFLV TV   +  E+  I
Sbjct:  407 ALCQQTLDDWTAKFSPLGIRLAELTSDSTSGPSKGS-VSLRDLASADVILTTPEKWDSITRRWKEHAFLVCTVLQNIEYEIEFI 489
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12689.2233.1 vs. uniprot
Match: A0A6G1HXB7_9PEZI (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Trichodelitschia bisporula TaxID=703511 RepID=A0A6G1HXB7_9PEZI)

HSP 1 Score: 118 bits (296), Expect = 6.120e-29
Identity = 54/97 (55.67%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 ALCQQTLDDWTAKFAPLGIRLAELTGDSKGSLVSLRDLASADIILTTPEKWDSVTRRWKEHAFLVGTVALVLVDEVHTIGEERGATLEVILARMKMV 291
            +LC +   DW+ KF+PLG+  AELTGD++ S   LR + +A II+TTPEKWD++TR+W++HA L+G V L L+DEVH + EERGATLE ++ARMK +
Sbjct:  288 SLCSERFRDWSKKFSPLGLGCAELTGDTEQS--ELRQVGNASIIITTPEKWDNITRKWQDHAKLMGMVKLFLIDEVHIVKEERGATLEAVVARMKSI 382
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12689.2233.1 vs. uniprot
Match: D4AT94_ARTBC (Helicase ATP-binding domain-containing protein n=1 Tax=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) TaxID=663331 RepID=D4AT94_ARTBC)

HSP 1 Score: 110 bits (276), Expect = 1.330e-28
Identity = 52/98 (53.06%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:    1 ALCQQTLDDWTAKFAPLGIRLAELTGDSKGSLVSLRDLASADIILTTPEKWDSVTRRWKEHAFLVGTVALVLVDEVHTIGEERGATLEVILARMKMVS 294
            +LC +   DW AKFAPL ++ AELTGD+      +R++  A II+TTPEKWDS+TR+WK+H  L+  + LVL+DEVH + E RGATLE +++RMK V+
Sbjct:   27 SLCSERFRDWRAKFAPLDLQCAELTGDTDH--FQIRNVQQASIIITTPEKWDSMTRKWKDHMKLMQLIKLVLIDEVHILKEARGATLEAVVSRMKSVN 122
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12689.2233.1 vs. uniprot
Match: A0A6A5YWU1_9PLEO (Sec63 Brl domain-containing protein n=1 Tax=Lophiotrema nucula TaxID=690887 RepID=A0A6A5YWU1_9PLEO)

HSP 1 Score: 116 bits (290), Expect = 3.950e-28
Identity = 55/97 (56.70%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 ALCQQTLDDWTAKFAPLGIRLAELTGDSKGSLVSLRDLASADIILTTPEKWDSVTRRWKEHAFLVGTVALVLVDEVHTIGEERGATLEVILARMKMV 291
            ALC +   DW  KF PLG++ AELTGDS G+   L ++ +ADII+TTPEKWDSVTR+W++HA L+  V L L+DEVH + E+RGATLE +++RMK +
Sbjct:  190 ALCSERSRDWQKKFNPLGLQCAELTGDSDGT--DLSNVKTADIIITTPEKWDSVTRKWQDHAKLMKLVKLFLIDEVHILKEDRGATLETVVSRMKTI 284
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12689.2233.1 vs. uniprot
Match: A0A074WVF4_9PEZI (Uncharacterized protein (Fragment) n=1 Tax=Aureobasidium namibiae CBS 147.97 TaxID=1043004 RepID=A0A074WVF4_9PEZI)

HSP 1 Score: 115 bits (288), Expect = 7.370e-28
Identity = 52/97 (53.61%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 ALCQQTLDDWTAKFAPLGIRLAELTGDSKGSLVSLRDLASADIILTTPEKWDSVTRRWKEHAFLVGTVALVLVDEVHTIGEERGATLEVILARMKMV 291
            +LC +   DW AKF PLG++  E+TGDS   + SL+ +  ADII+TTPEKWDS+TR+WK+H  LV  + L+L+DEVH + ++RGATLEV+++RMK +
Sbjct:  701 SLCSERAHDWKAKFEPLGLKCEEMTGDS--DITSLQHVQRADIIVTTPEKWDSMTRKWKDHERLVRLIKLLLIDEVHILNKDRGATLEVVVSRMKSI 795
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12689.2233.1 vs. uniprot
Match: W9XMW7_9EURO (Uncharacterized protein n=1 Tax=Capronia coronata CBS 617.96 TaxID=1182541 RepID=W9XMW7_9EURO)

HSP 1 Score: 115 bits (287), Expect = 1.000e-27
Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:    1 ALCQQTLDDWTAKFAPLGIRLAELTGDSKGSLVSLRDLASADIILTTPEKWDSVTRRWKEHAFLVGTVALVLVDEVHTIGEERGATLEVILARMKMVS 294
            +LC +   DW AKF  L ++ AELTGD++ S   LRD+ SA II+TTPEKWDSVTR+WK+HA L+  V L LVDEVH + E RGATLE +++RMK VS
Sbjct:   92 SLCSERHRDWRAKFGVLDLQCAELTGDTESS--HLRDVQSAHIIITTPEKWDSVTRKWKDHARLMQLVKLFLVDEVHILKESRGATLEAVVSRMKSVS 187
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12689.2233.1 vs. uniprot
Match: A0A178ECV6_9PLEO (Uncharacterized protein n=1 Tax=Pyrenochaeta sp. DS3sAY3a TaxID=765867 RepID=A0A178ECV6_9PLEO)

HSP 1 Score: 115 bits (287), Expect = 1.010e-27
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:    1 ALCQQTLDDWTAKFAPLGIRLAELTGDSKGSLVSLRDLASADIILTTPEKWDSVTRRWKEHAFLVGTVALVLVDEVHTIGEERGATLEVILARMKMV 291
            ALC +   DW  KF PLG++ AELTGDS  S   LR++ SA+II+TTPEKWDS+TR+WK+H  L+  V L L+DEVH + E RGA LEV+++RMK +
Sbjct:  713 ALCSERQRDWEIKFQPLGLKCAELTGDSDAS--DLRNVQSANIIITTPEKWDSITRKWKDHDKLMKLVKLFLIDEVHILKENRGAVLEVVVSRMKSI 807
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12689.2233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHU6_ECTSI1.430e-4990.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C995_9STRA2.960e-3570.41P-loop containing nucleoside triphosphate hydrolas... [more]
A0A0A9XP94_LYGHE1.390e-3059.18Putative ATP-dependent DNA helicase HFM1 (Fragment... [more]
A0A6H5KHN0_9PHAE7.100e-3076.19Helicase ATP-binding domain-containing protein n=1... [more]
A0A6G1HXB7_9PEZI6.120e-2955.67P-loop containing nucleoside triphosphate hydrolas... [more]
D4AT94_ARTBC1.330e-2853.06Helicase ATP-binding domain-containing protein n=1... [more]
A0A6A5YWU1_9PLEO3.950e-2856.70Sec63 Brl domain-containing protein n=1 Tax=Lophio... [more]
A0A074WVF4_9PEZI7.370e-2853.61Uncharacterized protein (Fragment) n=1 Tax=Aureoba... [more]
W9XMW7_9EURO1.000e-2759.18Uncharacterized protein n=1 Tax=Capronia coronata ... [more]
A0A178ECV6_9PLEO1.010e-2756.70Uncharacterized protein n=1 Tax=Pyrenochaeta sp. D... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12689contigH-canaliculatus_F_contig12689:322..1070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue6.5e-42
Seed eggNOG ortholog2880.D8LHU6
Preferred nameHFM1
KEGG koko:K15271
GOsGO:0000003,GO:0000280,GO:0000712,GO:0003674,GO:0003678,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006310,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0034641,GO:0034645,GO:0035825,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045132,GO:0045143,GO:0046483,GO:0048285,GO:0051026,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0061982,GO:0070013,GO:0070035,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0098813,GO:0140013,GO:0140097,GO:0140098,GO:1901360,GO:1901576,GO:1903046
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0952@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHelicase, C-terminal
Ec32 orthologEc-18_000510.1
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.980868-CDS-H-canaliculatus_F_contig12689:321..5131622928987.980868-CDS-H-canaliculatus_F_contig12689:321..513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12689 322..513 +
1696845639.9697673-CDS-H-canaliculatus_F_contig12689:321..5131696845639.9697673-CDS-H-canaliculatus_F_contig12689:321..513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12689 322..513 +
1622928987.9939978-CDS-H-canaliculatus_F_contig12689:968..10701622928987.9939978-CDS-H-canaliculatus_F_contig12689:968..1070Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12689 969..1070 +
1696845639.9863641-CDS-H-canaliculatus_F_contig12689:968..10701696845639.9863641-CDS-H-canaliculatus_F_contig12689:968..1070Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12689 969..1070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12689.2233.1prot_H-canaliculatus_F_contig12689.2233.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12689 322..1070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12689.2233.1

>prot_H-canaliculatus_F_contig12689.2233.1 ID=prot_H-canaliculatus_F_contig12689.2233.1|Name=mRNA_H-canaliculatus_F_contig12689.2233.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=98bp
ALCQQTLDDWTAKFAPLGIRLAELTGDSKGSLVSLRDLASADIILTTPEK
WDSVTRRWKEHAFLVGTVALVLVDEVHTIGEERGATLEVILARMKMVS
back to top

mRNA from alignment at H-canaliculatus_F_contig12689:322..1070+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12689.2233.1 ID=mRNA_H-canaliculatus_F_contig12689.2233.1|Name=mRNA_H-canaliculatus_F_contig12689.2233.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=749bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12689:322..1070+ (Hapterophycus canaliculatus Oshoro5f female)
GCGCTCTGCCAACAAACTTTGGATGACTGGACCGCCAAATTCGCGCCCCT
GGGAATCCGATTGGCCGAGCTCACGGGCGACTCCAAGGGGTCCCTGGTAT
CCCTCCGCGACCTCGCTTCTGCCGACATCATCCTCACAACTCCGGAAAAA
TGGGACAGCGTGACAAGGCGCTGGAAGGAACACGCCTTCTTGGTGTGTTT
TGTGGTACTCTGTTTAAGTGTGATTTGCGAAACATTTTCGTCCACATTCT
TTCCTTCGAGCTAAGCGCCTCCTTACGTGTGTCGCTGGCTGGGCTGTCCG
TATGGGAAATGTTCGCGCCTCACGTACGGTTGAGGCCGTTCATCTTTCAC
GTACGTATGGTTCTTGTTGTTCTGCAATGCATTGTACTCGTGATGTGGTT
GTTCGAAACGTATGAAAAAGTTGTCTGGAAGCGTGACGTGAGCGTTTTTG
TCTGGCCCAGGTCTCTGTAGAATATGTATGCCCGCGCCAAGTCTGTTCGT
CTGTGTTCGTCTTGCTTGCAGCATCCTGAATGAGCACGAACAAGCAGTGG
ATGCAGTCCCGGACTTCAGCTAAAGCGATAAAAATATCAATAATTGCGCC
ATGCGTTGTTCAAATGCGTGGAAACGACGTGAACCATCCTTCCTTAGGTG
GGAACCGTGGCTTTGGTTCTCGTCGACGAGGTGCACACTATCGGAGAAGA
GAGGGGCGCCACCCTAGAGGTCATCCTGGCAAGAATGAAGATGGTTTCG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12689:322..1070+

>mRNA_H-canaliculatus_F_contig12689.2233.1 ID=mRNA_H-canaliculatus_F_contig12689.2233.1|Name=mRNA_H-canaliculatus_F_contig12689.2233.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12689:322..1070+ (Hapterophycus canaliculatus Oshoro5f female)
GCGCTCTGCCAACAAACTTTGGATGACTGGACCGCCAAATTCGCGCCCCT
GGGAATCCGATTGGCCGAGCTCACGGGCGACTCCAAGGGGTCCCTGGTAT
CCCTCCGCGACCTCGCTTCTGCCGACATCATCCTCACAACTCCGGAAAAA
TGGGACAGCGTGACAAGGCGCTGGAAGGAACACGCCTTCTTGGCGCTCTG
CCAACAAACTTTGGATGACTGGACCGCCAAATTCGCGCCCCTGGGAATCC
GATTGGCCGAGCTCACGGGCGACTCCAAGGGGTCCCTGGTATCCCTCCGC
GACCTCGCTTCTGCCGACATCATCCTCACAACTCCGGAAAAATGGGACAG
CGTGACAAGGCGCTGGAAGGAACACGCCTTCTTGGTGGGAACCGTGGCTT
TGGTTCTCGTCGACGAGGTGCACACTATCGGAGAAGAGAGGGGCGCCACC
CTAGAGGTCATCCTGGCAAGAATGAAGATGGTTTCGGTGGGAACCGTGGC
TTTGGTTCTCGTCGACGAGGTGCACACTATCGGAGAAGAGAGGGGCGCCA
CCCTAGAGGTCATCCTGGCAAGAATGAAGATGGTTTCG
back to top