mRNA_H-canaliculatus_F_contig1265.2218.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1265.2218.1
Unique NamemRNA_H-canaliculatus_F_contig1265.2218.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1265.2218.1 vs. uniprot
Match: D7FZ63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ63_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 1.760e-78
Identity = 152/282 (53.90%), Postives = 178/282 (63.12%), Query Frame = 1 
Query:  106 GCGSVDAAGAGKQVAPSTPSSGGHQQPGAFLRKQLDAAPLVEREEDE--IVALSSYLACA-GRGWPWDGQDVLWAEYVSLNGLHRWIRAESCRHALLLVPGALYLLELPKEAVSRYMLYGLSTRVRGSWFVSLNASDLSHLSVPLTPHEPRPAAXXXXXXXXXXXXXXXXXXXXXXXXTSASSDRFDAGSGMILHKKGRVGACAWVECRSAASRDALVDVVRAWAQHAETKGKGRGKSKGQSAPTLRVELGSVAQLSAEAFGGERRGRKMPTLTDERQACLL 942
            G  +   AG G ++  +T S+    +   F  +     P ++REE+E  IVALSSYLACA GRGWPW G+D+LWAEYVSLNG HRW+RAE CRHALLLV G LYLLELP EAV+R+   GL+T  RGSW+V LNA DLSHLSVPL P EP  A                           A SD      G+ILHK+G +GA AWVECRSAASRDALVD V AWA+ A TKG         ++ + RVE  S A LSA  FGGERRGRK+ +LTDERQAC L
Sbjct:  165 GVRAAGGAGTGAELLTATVSA----RQDTFSEQSGGEVPRLDREEEEEEIVALSSYLACARGRGWPWSGKDILWAEYVSLNGHHRWVRAEHCRHALLLVRGWLYLLELPTEAVTRHRTKGLTTSARGSWYVGLNACDLSHLSVPLAPTEPWGAC-------------------------GARSDLEAPSCGLILHKRGVLGALAWVECRSAASRDALVDQVSAWARAAGTKGT--------ASRSFRVEPRSSAHLSA-GFGGERRGRKVASLTDERQACPL 408
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1265.2218.1 vs. uniprot
Match: A0A6H5JWC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC9_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 3.860e-78
Identity = 155/277 (55.96%), Postives = 177/277 (63.90%), Query Frame = 1 
Query:  124 AAGAGKQVAPSTPSSGGHQQPGAFLRKQLDAAPLVEREEDE--IVALSSYLACA-GRGWPWDGQDVLWAEYVSLNGLHRWIRAESCRHALLLVPGALYLLELPKEAVSRYMLYGLSTRVRGSWFVSLNASDLSHLSVPLTPHEPRPAAXXXXXXXXXXXXXXXXXXXXXXXXTSASSDRFDAGSGMILHKKGRVGACAWVECRSAASRDALVDVVRAWAQHAETKGKGRGKSKGQSAPTLRVELGSVAQLSAEAFGGERRGRKMPTLTDERQACLLW 945
            A GAGK       +    Q    F  +     P ++REE+E  IVALSSYLACA GRGWPW G+D+LWAEYVSLNG HRW+RAE CRHALLLV G LYLLELP EAV+R+   GL+T  RGSW+V LNA DLSHLSVPL P EPR A+                          A SD      G+ILHK+G +GA AWVECRSAASRDALVD V AWA+ A TKG         ++ + RVE  S A LSAE FGGERRGRK+ +LTDERQAC LW
Sbjct:  542 AGGAGKGAELPMVTVSARQD--TFSEQSRGEVPRLDREEEEEEIVALSSYLACARGRGWPWSGKDILWAEYVSLNGHHRWVRAEHCRHALLLVRGWLYLLELPTEAVTRHQTKGLTTSARGSWYVGLNACDLSHLSVPLAPTEPRGAS-------------------------GARSDLEAPSCGLILHKRGVLGALAWVECRSAASRDALVDHVSAWARAAGTKGT--------ASRSFRVEPRSSAHLSAE-FGGERRGRKVASLTDERQACPLW 782
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1265.2218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ63_ECTSI1.760e-7853.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWC9_9PHAE3.860e-7855.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1265contigH-canaliculatus_F_contig1265:18540..20280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size990
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1265.2218.1prot_H-canaliculatus_F_contig1265.2218.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1265 19735..20238 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928985.8679416-UTR-H-canaliculatus_F_contig1265:18539..188891622928985.8679416-UTR-H-canaliculatus_F_contig1265:18539..18889Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1265 18540..18889 +
1696845638.9046395-UTR-H-canaliculatus_F_contig1265:18539..188891696845638.9046395-UTR-H-canaliculatus_F_contig1265:18539..18889Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1265 18540..18889 +
1622928985.8808942-UTR-H-canaliculatus_F_contig1265:19640..197341622928985.8808942-UTR-H-canaliculatus_F_contig1265:19640..19734Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1265 19641..19734 +
1696845638.9215283-UTR-H-canaliculatus_F_contig1265:19640..197341696845638.9215283-UTR-H-canaliculatus_F_contig1265:19640..19734Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1265 19641..19734 +
1622928985.9602864-UTR-H-canaliculatus_F_contig1265:20238..202801622928985.9602864-UTR-H-canaliculatus_F_contig1265:20238..20280Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1265 20239..20280 +
1696845638.9454985-UTR-H-canaliculatus_F_contig1265:20238..202801696845638.9454985-UTR-H-canaliculatus_F_contig1265:20238..20280Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1265 20239..20280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928985.9457653-CDS-H-canaliculatus_F_contig1265:19734..202381622928985.9457653-CDS-H-canaliculatus_F_contig1265:19734..20238Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1265 19735..20238 +
1696845638.9352922-CDS-H-canaliculatus_F_contig1265:19734..202381696845638.9352922-CDS-H-canaliculatus_F_contig1265:19734..20238Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1265 19735..20238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1265.2218.1

>prot_H-canaliculatus_F_contig1265.2218.1 ID=prot_H-canaliculatus_F_contig1265.2218.1|Name=mRNA_H-canaliculatus_F_contig1265.2218.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=168bp
MLYGLSTRVRGSWFVSLNASDLSHLSVPLTPHEPRPAAAAAATAAAIAAA
VRRSSSAATPAATSASSDRFDAGSGMILHKKGRVGACAWVECRSAASRDA
LVDVVRAWAQHAETKGKGRGKSKGQSAPTLRVELGSVAQLSAEAFGGERR
GRKMPTLTDERQACLLW*
back to top

mRNA from alignment at H-canaliculatus_F_contig1265:18540..20280+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1265.2218.1 ID=mRNA_H-canaliculatus_F_contig1265.2218.1|Name=mRNA_H-canaliculatus_F_contig1265.2218.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1741bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1265:18540..20280+ (Hapterophycus canaliculatus Oshoro5f female)
GAGAAAGAGGAGGAGGAGGAGGGGAGGGGGGAGGAGGGGGAGGGGCGAGA
ACAACACGAGCTGGAGCAGAGGCAACGGCTCGGTCGACCTTTCCAAAGAA
GGAACGGCTGCGGTAGTGTCGATGCGGCCGGAGCAGGGAAACAAGTAGCG
CCGTCCACGCCTTCCAGCGGCGGACATCAGCAGCCAGGCGCCTTCCTGCG
GAAACAGCTGGACGCCGCTCCGCTGGTGGAGCGAGAGGAGGATGAGATCG
TCGCCCTCTCGAGCTACTTGGCCTGTGCCGGGCGGGGGTGGCCCTGGGAC
GGGCAGGACGTCCTTTGGGCTGAGTACGTGTCGCTCAACGGCCTACACAG
GTGTGTGCTCATGGGTTGCCGTGGTTGATGTGTGCATATTGGTGCGATAG
AGACCGAGCCACCCCCCAGCAAGAGCAATCTGGCGTGAGGTGCGAGGTTC
TGGTTGTGTTTGTTCGTTTGCGGGGAGGTATGGGTTGTGTGTTGTGTTAT
GTTGTCGTGTGTTGTGTAGTGTCAGTGTGTCTTGCGTCTGGGCTGCTTTG
GCGTGCTCAGCCTATGGTGTTGAAGGCCTCCGCTCGTGCTTCTTTCTGTG
TGAAAGCACGGCATGCCACGGCATGCCCGGGAGCTGCCACCGCTGAAAAC
GCGAGGCAGACGAAAGCTCAGGGCGAAAAGATATGGCGTTTAACGTTGCA
AGGCGGTCGGTGACAATTAAATAACCTCTTGTAGTTTCTCCTTGACGGTG
GTCACTTTCGCCTCTTCCTCTTTCCCCACGAACATTTCTCATACAAACAG
AGGTACCATGCGCTCTTCCGTTCCCTGCTCCGAACAAACCAATCGCGGAT
TTTTTTGCTGACTTCGCGCTCGGAAGTGAGTTCATTCGGTCGATACGTAC
TTGCAATCTTGTCTGTCAACCCGTCATATTTTGTCGCACACAGGGCAAGT
GTCACATCTGCGTTTTGTTTTGTCTGATCGCGGACACCACCAACCCTTTC
CCTCCCTCCTCTCCTCCTTTCCCTCGCCTCGCCTCACTTCGGCTCCCGCT
TTCGCCACGTTTCGCGTGACGGGTCTGCCTCATGTGCTTCATGTCATCCA
GGTGGATCCGAGCCGAAAGCTGTCGTCACGCTCTCCTCCTGGTTCCCGGA
GCGCTTTACCTCCTCGAGTTGCCAAAGGAAGCTGTGAGTCGGTACATGTT
GTACGGCCTCTCTACCCGCGTCCGCGGCAGCTGGTTTGTGAGCCTCAATG
CGTCGGACCTCAGCCACCTGTCCGTGCCGCTCACACCTCACGAGCCAAGG
CCAGCAGCAGCAGCAGCGGCGACTGCAGCGGCGATTGCAGCGGCCGTTAG
AAGAAGCAGCTCAGCAGCAACCCCGGCGGCGACAAGCGCGTCCTCCGATC
GCTTCGATGCCGGCAGCGGGATGATCCTGCATAAGAAGGGTCGAGTCGGC
GCGTGTGCATGGGTGGAGTGCCGGAGCGCCGCCAGCCGCGATGCTCTCGT
CGACGTCGTTCGCGCGTGGGCGCAGCATGCCGAGACCAAGGGCAAGGGCA
GGGGAAAAAGCAAGGGCCAGAGCGCGCCCACGCTTAGAGTGGAGCTTGGT
TCCGTGGCGCAGCTGTCGGCTGAGGCCTTTGGCGGAGAGCGGCGGGGAAG
GAAGATGCCGACCTTGACGGATGAGAGGCAGGCGTGTCTCTTGTGGTAAA
TGGCGTGAAGCTGTCGTGATGGAAGGAGAAAGTGGGAGGAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1265:18540..20280+

>mRNA_H-canaliculatus_F_contig1265.2218.1 ID=mRNA_H-canaliculatus_F_contig1265.2218.1|Name=mRNA_H-canaliculatus_F_contig1265.2218.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1008bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1265:18540..20280+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTGTACGGCCTCTCTACCCGCGTCCGCGGCAGCTGGTTTGTGAGCCT
CAATGCGTCGGACCTCAGCCACCTGTCCGTGCCGCTCACACCTCACGAGC
CAAGGCCAGCAGCAGCAGCAGCGGCGACTGCAGCGGCGATTGCAGCGGCC
GTTAGAAGAAGCAGCTCAGCAGCAACCCCGGCGGCGACAAGCGCGTCCTC
CGATCGCTTCGATGCCGGCAGCGGGATGATCCTGCATAAGAAGGGTCGAG
TCGGCGCGTGTGCATGGGTGGAGTGCCGGAGCGCCGCCAGCCGCGATGCT
CTCGTCGACGTCGTTCGCGCGTGGGCGCAGCATGCCGAGACCAAGGGCAA
GGGCAGGGGAAAAAGCAAGGGCCAGAGCGCGCCCACGCTTAGAGTGGAGC
TTGGTTCCGTGGCGCAGCTGTCGGCTGAGGCCTTTGGCGGAGAGCGGCGG
GGAAGGAAGATGCCGACCTTGACGGATGAGAGGCAGGCGTGTCTCTTGTG
GTAAATGTTGTACGGCCTCTCTACCCGCGTCCGCGGCAGCTGGTTTGTGA
GCCTCAATGCGTCGGACCTCAGCCACCTGTCCGTGCCGCTCACACCTCAC
GAGCCAAGGCCAGCAGCAGCAGCAGCGGCGACTGCAGCGGCGATTGCAGC
GGCCGTTAGAAGAAGCAGCTCAGCAGCAACCCCGGCGGCGACAAGCGCGT
CCTCCGATCGCTTCGATGCCGGCAGCGGGATGATCCTGCATAAGAAGGGT
CGAGTCGGCGCGTGTGCATGGGTGGAGTGCCGGAGCGCCGCCAGCCGCGA
TGCTCTCGTCGACGTCGTTCGCGCGTGGGCGCAGCATGCCGAGACCAAGG
GCAAGGGCAGGGGAAAAAGCAAGGGCCAGAGCGCGCCCACGCTTAGAGTG
GAGCTTGGTTCCGTGGCGCAGCTGTCGGCTGAGGCCTTTGGCGGAGAGCG
GCGGGGAAGGAAGATGCCGACCTTGACGGATGAGAGGCAGGCGTGTCTCT
TGTGGTAA
back to top