mRNA_H-canaliculatus_F_contig1265.2215.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1265.2215.1
Unique NamemRNA_H-canaliculatus_F_contig1265.2215.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1265.2215.1 vs. uniprot
Match: A0A6H5JSK3_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSK3_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 3.930e-39
Identity = 66/81 (81.48%), Postives = 75/81 (92.59%), Query Frame = 1
Query:   40 TRRGGTAIGAAARIVTGEELEVEMTEWDAPMILDVFATWCGPCVQLKPEVEKQVSQALEGKCRVLKLDSDEEEAMAGALNV 282
            +RRG TA+  AAR+VTGEELEVE+TEW+ PMILDVFATWCGPC+QLKPE+EK +SQALEGKCRVLKLDSDEEE MAGALN+
Sbjct:   61 SRRGSTAMQVAARLVTGEELEVELTEWELPMILDVFATWCGPCIQLKPEIEK-LSQALEGKCRVLKLDSDEEEDMAGALNI 140          
BLAST of mRNA_H-canaliculatus_F_contig1265.2215.1 vs. uniprot
Match: A0A7S2V5P5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P5_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.070e-20
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   64 GAAARIVTGEELEVEMTEWDAPMILDVFATWCGPCVQLKPEVEKQVSQALEGKCRVLKLDSDEEEAMAGALNV 282
            G  AR VTGEELEVE T+WD PM+LD++ATWCGPC+ L PE++K V+Q    + RVLK+DS+ E  ++GA  V
Sbjct:   90 GPKARSVTGEELEVEFTDWDTPMVLDIYATWCGPCLILAPELDK-VAQHFGDRLRVLKMDSEAEPEISGAFKV 161          
BLAST of mRNA_H-canaliculatus_F_contig1265.2215.1 vs. uniprot
Match: B5Y525_PHATC (Thioredoxin y n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y525_PHATC)

HSP 1 Score: 90.1 bits (222), Expect = 1.260e-20
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 1
Query:   70 AARIVTGEELEVEMTEWDAPMILDVFATWCGPCVQLKPEVEKQVSQALEGKCRVLKLDSDEEEAMAGALNV 282
            AA +VTGE+LE+ + EWD P+++D +ATWCGPC+ + PE E   S+ L+GK R +KLD+D+EEAMA  LN+
Sbjct:   52 AAPLVTGEQLEIMLQEWDTPLVVDAYATWCGPCLLMAPEFEAAASE-LKGKVRFVKLDTDKEEAMAARLNI 121          
BLAST of mRNA_H-canaliculatus_F_contig1265.2215.1 vs. uniprot
Match: A0A448Z7R8_9STRA (Thioredoxin domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7R8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.220e-19
Identity = 42/95 (44.21%), Postives = 62/95 (65.26%), Query Frame = 1
Query:    1 AAPGLVRRDAFRKTRRGGTAIGAAARIVTGEELEVEMTEWDAPMILDVFATWCGPCVQLKPEVEKQVSQALEGKCRVLKLDSDEEEAMAGALNVS 285
            A P + RR A       G  + +A + V+GEELEV + +WD P+++D +ATWCGPC+ + PE E Q ++ L+GK R +KLD+DE E MA  L ++
Sbjct:    9 AGPAVARRSALFMAE--GEEVKSAPK-VSGEELEVMLQDWDTPLVIDAYATWCGPCLLMSPEFE-QAAKELDGKVRFVKLDTDENEEMAARLAIN 99          
BLAST of mRNA_H-canaliculatus_F_contig1265.2215.1 vs. uniprot
Match: A0A1E7FUI2_9STRA (Thioredoxin-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FUI2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 7.210e-19
Identity = 37/71 (52.11%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   73 ARIVTGEELEVEMTEWDAPMILDVFATWCGPCVQLKPEVEKQVSQALEGKCRVLKLDSDEEEAMAGALNVS 285
            A +VTGE+LE+ +TEWD P+++D +ATWCGPC+ + PE E   ++ LEGK R +KLD+D+EE MA  L ++
Sbjct:   14 ATMVTGEQLEMILTEWDTPLVIDAYATWCGPCLLMSPEFEA-AAKDLEGKVRFVKLDTDKEEEMATRLAIN 83          
BLAST of mRNA_H-canaliculatus_F_contig1265.2215.1 vs. uniprot
Match: A0A835Z7J6_9STRA (Thioredoxin-related protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7J6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 9.110e-19
Identity = 44/93 (47.31%), Postives = 63/93 (67.74%), Query Frame = 1
Query:   22 RDAFRKTRRGGTAIGAAA------RIVTGEELEVEMTEWDAPMILDVFATWCGPCVQLKPEVEKQVSQALEGKCRVLKLDSDEEEAMAGALNV 282
            R+A   +R  G++ GA A      R +TG E EVE+ +  +P++LD+FA WCGPCV L PE+EK  ++ L G+ RVLK+DSD+E+A+  AL V
Sbjct:   40 RNACTSSRAIGSSSGAGALRMGAVREITGAEFEVELADTSSPILLDIFAVWCGPCVMLAPELEK-AAEELGGQVRVLKIDSDKEDAITSALRV 131          
BLAST of mRNA_H-canaliculatus_F_contig1265.2215.1 vs. uniprot
Match: A0A7S4AGT3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AGT3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.520e-18
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 AAPGLVRRDAFRKTRRGGTAIGAAARIVTGEELEVEMTEWDAPMILDVFATWCGPCVQLKPEVEKQVSQALEGKCRVLKLDSDEEEAMAGALNVS 285
            AAP L RR A       G  + +A + V+GE+LE+ + EW+ P+++D +ATWCGPC+ + PE E + ++ LEGK R +KLD+DE E MA  L ++
Sbjct:   25 AAPALTRRAALFMA--DGEEVKSAPK-VSGEQLEMMLQEWETPLVIDAYATWCGPCLLMSPEYE-EAAKELEGKVRFVKLDTDESEQMAARLAIN 115          
BLAST of mRNA_H-canaliculatus_F_contig1265.2215.1 vs. uniprot
Match: A0A7S2MUL9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MUL9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.680e-18
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 1
Query:   70 AARIVTGEELEVEMTEWDAPMILDVFATWCGPCVQLKPEVEKQVSQALEGKCRVLKLDSDEEEAMAGALNV 282
            AA  VTGEELE+ +TEWD P+++D +ATWCGPC+ + PE E   +Q L+GK R  KLD+D+   MA  LN+
Sbjct:   61 AASSVTGEELELMLTEWDEPLVVDAYATWCGPCLLMAPEFEA-AAQELKGKVRFAKLDTDKHPEMAARLNI 130          
BLAST of mRNA_H-canaliculatus_F_contig1265.2215.1 vs. uniprot
Match: A0A7S0FMJ0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FMJ0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 6.460e-18
Identity = 35/71 (49.30%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   70 AARIVTGEELEVEMTEWDAPMILDVFATWCGPCVQLKPEVEKQVSQALEGKCRVLKLDSDEEEAMAGALNV 282
            AA +V+G ELEV +T+WD P+++D +ATWCGPC+ + PE E    + L+GK R +K+D+D+E+ MA  LN+
Sbjct:   70 AAPLVSGAELEVMLTDWDEPLVVDAYATWCGPCLLMAPEFEAAAKE-LKGKVRFVKIDTDQEQEMAARLNI 139          
BLAST of mRNA_H-canaliculatus_F_contig1265.2215.1 vs. uniprot
Match: A0A7S0Y5L8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y5L8_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.150e-17
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   70 AARIVTGEELEVEMTEWDAPMILDVFATWCGPCVQLKPEVEKQVSQALEGKCRVLKLDSDEEEAMAGALNVS 285
            AA  V+GEELEV   +WD PM++D +ATWCGPC+ + PE E    + LEGK R +KLD+D+ E MA  L ++
Sbjct:   50 AAPSVSGEELEVMFQDWDTPMVIDAYATWCGPCLLMSPEFEAAAKE-LEGKVRFVKLDTDQNEIMANKLAIN 120          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1265.2215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSK3_9PHAE3.930e-3981.48Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A7S2V5P5_9STRA1.070e-2057.53Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B5Y525_PHATC1.260e-2054.93Thioredoxin y n=1 Tax=Phaeodactylum tricornutum (s... [more]
A0A448Z7R8_9STRA5.220e-1944.21Thioredoxin domain-containing protein n=1 Tax=Pseu... [more]
A0A1E7FUI2_9STRA7.210e-1952.11Thioredoxin-like protein n=1 Tax=Fragilariopsis cy... [more]
A0A835Z7J6_9STRA9.110e-1947.31Thioredoxin-related protein n=1 Tax=Tribonema minu... [more]
A0A7S4AGT3_9STRA1.520e-1844.21Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2MUL9_9STRA2.680e-1853.52Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S0FMJ0_9STRA6.460e-1849.30Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S0Y5L8_9STRA1.150e-1751.39Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1265contigH-canaliculatus_F_contig1265:4919..5495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue3e-31
Seed eggNOG ortholog2880.D7FZ61
EggNOG free text desc.glycerol ether metabolic process
EggNOG OGsCOG0526@1,KOG0910@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionthioredoxin-related protein
Ec32 orthologEc-02_006390.1
Exons2
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928985.1062279-CDS-H-canaliculatus_F_contig1265:4918..50171622928985.1062279-CDS-H-canaliculatus_F_contig1265:4918..5017Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1265 4919..5017 -
1696845638.7656767-CDS-H-canaliculatus_F_contig1265:4918..50171696845638.7656767-CDS-H-canaliculatus_F_contig1265:4918..5017Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1265 4919..5017 -
1622928985.1376882-CDS-H-canaliculatus_F_contig1265:5300..54951622928985.1376882-CDS-H-canaliculatus_F_contig1265:5300..5495Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1265 5301..5495 -
1696845638.7765415-CDS-H-canaliculatus_F_contig1265:5300..54951696845638.7765415-CDS-H-canaliculatus_F_contig1265:5300..5495Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1265 5301..5495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1265.2215.1prot_H-canaliculatus_F_contig1265.2215.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1265 4919..5495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1265.2215.1

>prot_H-canaliculatus_F_contig1265.2215.1 ID=prot_H-canaliculatus_F_contig1265.2215.1|Name=mRNA_H-canaliculatus_F_contig1265.2215.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=98bp
AAPGLVRRDAFRKTRRGGTAIGAAARIVTGEELEVEMTEWDAPMILDVFA
TWCGPCVQLKPEVEKQVSQALEGKCRVLKLDSDEEEAMAGALNVSRP*
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mRNA from alignment at H-canaliculatus_F_contig1265:4919..5495-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1265.2215.1 ID=mRNA_H-canaliculatus_F_contig1265.2215.1|Name=mRNA_H-canaliculatus_F_contig1265.2215.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=577bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1265:4919..5495- (Hapterophycus canaliculatus Oshoro5f female)
GCCGCACCAGGCTTGGTTCGACGCGATGCTTTTCGGAAAACAAGGAGAGG GGGGACAGCGATAGGAGCGGCCGCTCGGATTGTGACTGGCGAAGAGCTTG AGGTGGAGATGACCGAGTGGGATGCTCCGATGATCCTGGACGTATTTGCC ACGTGGTGCGGTCCTTGCGTCCAGCTAAAGCCAGAGGTCGAGAAGGTGAG ATGGGCAGAATGAGATGTGACACCATGTTAAGTAGGTCGGAAACTGCCGC GATCTTAAATACTCATTCTTGACCGGACAGTGGGCCACATGCCGCACTCT TACGACACGCAGTTGGTTACGTTCAGTGGACCGTCGATCATCACATTTCC AGAAGAAGTCCTACACTGTTTGGGCAAAGCTTCCTGATTTCCCTGCCGGA GTCATGCCATGCTGGTGGCTGAGAATCACCCAATCCTCGTGTTCATGTTA GCTCAACCTGCTGCAATTCTCTGGGGAGCAGGTGTCGCAAGCACTTGAAG GAAAGTGCCGCGTGTTGAAACTGGACAGTGACGAGGAGGAGGCAATGGCG GGCGCTCTTAACGTGAGTCGACCTTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1265:4919..5495-

>mRNA_H-canaliculatus_F_contig1265.2215.1 ID=mRNA_H-canaliculatus_F_contig1265.2215.1|Name=mRNA_H-canaliculatus_F_contig1265.2215.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1265:4919..5495- (Hapterophycus canaliculatus Oshoro5f female)
GCCGCACCAGGCTTGGTTCGACGCGATGCTTTTCGGAAAACAAGGAGAGG
GGGGACAGCGATAGGAGCGGCCGCTCGGATTGTGACTGGCGAAGAGCTTG
AGGTGGAGATGACCGAGTGGGATGCTCCGATGATCCTGGACGTATTTGCC
ACGTGGTGCGGTCCTTGCGTCCAGCTAAAGCCAGAGGTCGAGAAGGCCGC
ACCAGGCTTGGTTCGACGCGATGCTTTTCGGAAAACAAGGAGAGGGGGGA
CAGCGATAGGAGCGGCCGCTCGGATTGTGACTGGCGAAGAGCTTGAGGTG
GAGATGACCGAGTGGGATGCTCCGATGATCCTGGACGTATTTGCCACGTG
GTGCGGTCCTTGCGTCCAGCTAAAGCCAGAGGTCGAGAAGCAGGTGTCGC
AAGCACTTGAAGGAAAGTGCCGCGTGTTGAAACTGGACAGTGACGAGGAG
GAGGCAATGGCGGGCGCTCTTAACGTGAGTCGACCTTAACAGGTGTCGCA
AGCACTTGAAGGAAAGTGCCGCGTGTTGAAACTGGACAGTGACGAGGAGG
AGGCAATGGCGGGCGCTCTTAACGTGAGTCGACCTTAA
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