mRNA_H-canaliculatus_F_contig12646.2212.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12646.2212.1
Unique NamemRNA_H-canaliculatus_F_contig12646.2212.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12646.2212.1 vs. uniprot
Match: D7G669_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G669_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 3.970e-29
Identity = 83/123 (67.48%), Postives = 92/123 (74.80%), Query Frame = 1 
Query:    1 LLALWDYLLVRHDKHFGFFLVLAALXXXXXXXXAASGLQLRLLLAETLSPASMATLLVAKEGGGGESAAKASPLALWCGEAEALDVATPESFRHHLALIGEIAEAEYEAAVRTRAQKGAEAGS 369
            LL LWDYLLVRHDKHFGFFL     XXXXXX   A+G QLRLLLAETLSP++MA+LLV      GE + +         EAEALD+ATPESFRHHLALIGEIAEAE+EAAVR RAQ+  E GS
Sbjct:  453 LLPLWDYLLVRHDKHFGFFLXXXXXXXXXXXLLLATGPQLRLLLAETLSPSAMASLLV-----DGEESLEGE-------EAEALDLATPESFRHHLALIGEIAEAEHEAAVRARAQRRVEGGS 563
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12646.2212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G669_ECTSI3.970e-2967.48Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12646contigH-canaliculatus_F_contig12646:258..2373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue5.9e-26
Seed eggNOG ortholog2880.D7G669
EggNOG free text desc.embryonic brain development
EggNOG OGsKOG3636@1,KOG3636@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRhodanese-like domain
Ec32 orthologEc-00_009680.1
Exons3
Model size455
Cds size453
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12646.2212.1prot_H-canaliculatus_F_contig12646.2212.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12646 258..2373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928984.804422-CDS-H-canaliculatus_F_contig12646:257..3861622928984.804422-CDS-H-canaliculatus_F_contig12646:257..386Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12646 258..386 -
1696845638.6248968-CDS-H-canaliculatus_F_contig12646:257..3861696845638.6248968-CDS-H-canaliculatus_F_contig12646:257..386Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12646 258..386 -
1622928984.8230724-CDS-H-canaliculatus_F_contig12646:1788..20621622928984.8230724-CDS-H-canaliculatus_F_contig12646:1788..2062Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12646 1789..2062 -
1696845638.6371272-CDS-H-canaliculatus_F_contig12646:1788..20621696845638.6371272-CDS-H-canaliculatus_F_contig12646:1788..2062Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12646 1789..2062 -
1622928984.843119-CDS-H-canaliculatus_F_contig12646:2323..23731622928984.843119-CDS-H-canaliculatus_F_contig12646:2323..2373Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12646 2324..2373 -
1696845638.6485476-CDS-H-canaliculatus_F_contig12646:2323..23731696845638.6485476-CDS-H-canaliculatus_F_contig12646:2323..2373Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12646 2324..2373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12646.2212.1

>prot_H-canaliculatus_F_contig12646.2212.1 ID=prot_H-canaliculatus_F_contig12646.2212.1|Name=mRNA_H-canaliculatus_F_contig12646.2212.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=151bp
LLALWDYLLVRHDKHFGFFLVLAALLRRREELLAASGLQLRLLLAETLSP
ASMATLLVAKEGGGGESAAKASPLALWCGEAEALDVATPESFRHHLALIG
EIAEAEYEAAVRTRAQKGAEAGSIEGATRAAAAAPAAAAPGGTGPSGGEE
G
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mRNA from alignment at H-canaliculatus_F_contig12646:258..2373-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12646.2212.1 ID=mRNA_H-canaliculatus_F_contig12646.2212.1|Name=mRNA_H-canaliculatus_F_contig12646.2212.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2116bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12646:258..2373- (Hapterophycus canaliculatus Oshoro5f female)
TTGCTCGCGCTGTGGGACTATTTACTCGTTCGGCACGACAAGCACTTCGG
GTGAGGAACCGCCGGAAGCGCTGGAAGCACCGGAAGCGCCGCCGCGTTTG
CTTTTTACACGCCCGCGAGCGCGATGCTGCACGGCGAAGGCATCCGTGTG
TGTGTGTGTGTGTCGTGGAAAGAGCCCTCTGTTCTTTGCCGATGCTCTCG
GGCGACGGACGGGCGCGCTTGTACACCGCTCACAACTACTTTTCTTACCC
CCTCCTTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTCGGCGCCGAAA
AAACGGGACAGTTTTTTCTTGGTGCTGGCCGCGTTGCTCCGCCGCCGGGA
AGAGCTTCTTGCCGCGTCCGGCCTTCAGCTGCGCCTCCTCCTAGCGGAAA
CCCTGTCACCTGCCTCCATGGCGACCCTGCTGGTGGCGAAAGAAGGGGGC
GGCGGAGAGAGCGCCGCGAAGGCATCGCCGCTCGCGCTGTGGTGCGGGGA
GGCGGAGGCGCTGGACGTGGCGACGCCTGAGTCGTTCAGGCACCACCTGG
CGCTGATCGGCGAAATCGCCGAGGCCGAATACGAGGTAAGCCAACGCGAC
TGGTAAACTGGCGCCGCAAATCGAGGGTACTTTGCACGTGCATGTCGTGG
ACACATAGCTCGTGTCAGGGTCGTTGTGCAGGGGTCCGTGACGTTAGCCA
ATACGAGAGCGTTGGATTCGATCGTTGCAGAAACCTCGGGGGCATGATGC
AGCAGCTATGCGTAGATCAACAAGATCCCGATGAATGATTTGGTTGTCGC
AAACGGACGATGACACCCCCGGGAAAAGCCCGATCTCGAGGGCGGTGTGG
AGGACCACGACGAGTGGGTGCGGGGTGGTTGATGCGCTGCAACGATCACG
GCGATGATGTGCTACGTCGTTGGTCCTAGTCCTTTTTCTAGGGCACGGCC
TCCATCCACACTTCAAGATGGGAGAAGAGATGGGCATTGAATCAGTGGAT
TGTGCCGTCTTCGCCAAGCTCACAGAAACGCCACACGCATGACGACCTCC
AGCTACATTGCAGTAGTAGGGCATTGACACGGCGGTACGGATCAAGGAAA
ACGCAGATGCTAGGTACAAGGGGAAAATGGCCGAAGTCACGGACAAAACT
GGAAAGTCGCAAACTGATCTGATTTATTTTCAGCAGGCAACAAATGTCGA
TCTGACGATGGGATACTTTTTGCTTTCACTGCTTCAGCGAATTATTGTTT
TTTGCCGCATCTTCGGTCTTTTGTCTTTTGAAAAAAGGTTAAACAACACT
AAAGTTTGTCTTTGGCCGTTGGCCCGTGCATGTGTGCGTGTTTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTTGTTTTTGTCGCACATGGGTCCTGTGA
CAACACTCCGCAGGAGATACTGATACATCCGCTATCTCCTCAGTGCACAT
TTTGCTACGTACGGAGGTTAATTGAGCAGCAGCAGCGTGCGTGGAAAATA
TAATGAAGAATGATATCACACGTATTTCAGCTCGATTGCCGGATAGATGC
GCGGACATGCGGAAGGGGGACAGGGGACGAAAAACATATTTTCGTGTTTT
CATCAATGTAGCGATTTTTTGGGGGGTGGCGGAAAGGGTAGGTTCTGACA
GTCCTGAAAAAGACCCGTCCTGCGGTTGCATTCCACGTGGCGTCGCCCCC
ACGCACAGGCAATGGCCGTTGACCTTGCCTCCGTGTTCGGTCTGCGGACA
CGATTTTTGCATTGGTTTGTTGGTAGCGTCCATTACATGGGTCGCTCCAT
GCGAATCCCCGTAGATTGGACTTGTCGTGCATCGAAGGAGGTCTGGCCCC
CTGCCTGGTACGTACATAAGAAACCTTTCCACCACCCCTGAGAACGTCGT
TATACTGGTCCGACCATTTTCTGTCTCTTTCCATCCACGCGTTGCTTCAC
TCCATGCATCCATGCATACACAATCAATCAACGCCAGGCGGCCGTTAGAA
CGCGGGCGCAGAAGGGCGCGGAGGCGGGCAGCATCGAGGGAGCTACAAGA
GCAGCGGCGGCGGCGCCGGCGGCGGCGGCGCCTGGGGGCACGGGCCCGTC
GGGTGGCGAAGAGGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12646:258..2373-

>mRNA_H-canaliculatus_F_contig12646.2212.1 ID=mRNA_H-canaliculatus_F_contig12646.2212.1|Name=mRNA_H-canaliculatus_F_contig12646.2212.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=906bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12646:258..2373- (Hapterophycus canaliculatus Oshoro5f female)
TTGCTCGCGCTGTGGGACTATTTACTCGTTCGGCACGACAAGCACTTCGG
TTGCTCGCGCTGTGGGACTATTTACTCGTTCGGCACGACAAGCACTTCGG
TTTTTTCTTGGTGCTGGCCGCGTTGCTCCGCCGCCGGGAAGAGCTTCTTG
CCGCGTCCGGCCTTCAGCTGCGCCTCCTCCTAGCGGAAACCCTGTCACCT
GCCTCCATGGCGACCCTGCTGGTGGCGAAAGAAGGGGGCGGCGGAGAGAG
CGCCGCGAAGGCATCGCCGCTCGCGCTGTGGTGCGGGGAGGCGGAGGCGC
TGGACGTGGCGACGCCTGAGTCGTTCAGGCACCACCTGGCGCTGATCGGC
GAAATCGCCGAGGCCGAATACGAGTTTTTTCTTGGTGCTGGCCGCGTTGC
TCCGCCGCCGGGAAGAGCTTCTTGCCGCGTCCGGCCTTCAGCTGCGCCTC
CTCCTAGCGGAAACCCTGTCACCTGCCTCCATGGCGACCCTGCTGGTGGC
GAAAGAAGGGGGCGGCGGAGAGAGCGCCGCGAAGGCATCGCCGCTCGCGC
TGTGGTGCGGGGAGGCGGAGGCGCTGGACGTGGCGACGCCTGAGTCGTTC
AGGCACCACCTGGCGCTGATCGGCGAAATCGCCGAGGCCGAATACGAGGC
GGCCGTTAGAACGCGGGCGCAGAAGGGCGCGGAGGCGGGCAGCATCGAGG
GAGCTACAAGAGCAGCGGCGGCGGCGCCGGCGGCGGCGGCGCCTGGGGGC
ACGGGCCCGTCGGGTGGCGAAGAGGGCGCGGCCGTTAGAACGCGGGCGCA
GAAGGGCGCGGAGGCGGGCAGCATCGAGGGAGCTACAAGAGCAGCGGCGG
CGGCGCCGGCGGCGGCGGCGCCTGGGGGCACGGGCCCGTCGGGTGGCGAA
GAGGGC
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