mRNA_H-canaliculatus_F_contig12636.2207.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12636.2207.1
Unique NamemRNA_H-canaliculatus_F_contig12636.2207.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12636.2207.1 vs. uniprot
Match: D7G542_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G542_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.540e-24
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGITGRKKADAARRWIKTHSISYTFVVDEFFPNPDFSFHQ 153
            VVTNDLYRDHVKGI GRKKADAARRWIK HSISYTFV DEFFPNPDFSFHQ
Sbjct: 1539 VVTNDLYRDHVKGIEGRKKADAARRWIKAHSISYTFVGDEFFPNPDFSFHQ 1589
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BLAST of mRNA_H-canaliculatus_F_contig12636.2207.1 vs. uniprot
Match: A0A835YPQ7_9STRA (Zc3h12a-like ribonuclease NYN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPQ7_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.450e-15
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGITGRKKADAARRWIKTHSISYTFVVDEFFPNPDFSF 147
            VVTND YRDH   + G KK +AARRW+K H+ISYTFV DEF PNPDF F
Sbjct: 1178 VVTNDQYRDHYAALQGAKKREAARRWVKGHTISYTFVGDEFMPNPDFQF 1226
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BLAST of mRNA_H-canaliculatus_F_contig12636.2207.1 vs. uniprot
Match: A0A485LSN2_9STRA (Aste57867_25204 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSN2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.750e-13
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGITGRKKADAARRWIKTHSISYTFVVDEFFPNPDFSF 147
            +VTNDL+RDH++ I G K+  A R W+K H IS+T+V DEFFPNPDF F
Sbjct:  910 LVTNDLFRDHLENIKGGKQKGAMREWLKNHRISFTWVGDEFFPNPDFRF 958
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BLAST of mRNA_H-canaliculatus_F_contig12636.2207.1 vs. uniprot
Match: A0A7S2CKB1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CKB1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.940e-12
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGITGRKKADAARRWIKTHSISYTFVVDEFFPNPDFSF 147
            VVTND+YRDHV  IT  ++     +W+++H ISYTFV DEF PNPDF F
Sbjct:  151 VVTNDMYRDHVGKITNHRERKECLQWMRSHLISYTFVGDEFLPNPDFKF 199
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BLAST of mRNA_H-canaliculatus_F_contig12636.2207.1 vs. uniprot
Match: A0A1V9YYR1_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YYR1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.400e-12
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGI--TGRKKADAARRWIKTHSISYTFVVDEFFPNPDFSF 147
            VVTNDL+RDHV+G+  +G+KKA A R+W+  H IS+T+V DEFFPNPDF F
Sbjct: 1140 VVTNDLFRDHVEGMNASGQKKA-AMRQWLAAHRISFTWVGDEFFPNPDFRF 1189
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BLAST of mRNA_H-canaliculatus_F_contig12636.2207.1 vs. uniprot
Match: A0A1V9YL36_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YL36_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 8.210e-12
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGITGRKKADAA-RRWIKTHSISYTFVVDEFFPNPDFSF 147
            VVTNDL+RDHV G+TG     AA R+W+ +H IS+T+V DE+FPNPDF F
Sbjct:  843 VVTNDLFRDHVDGMTGTGAQKAAMRQWLNSHRISFTWVGDEYFPNPDFRF 892
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BLAST of mRNA_H-canaliculatus_F_contig12636.2207.1 vs. uniprot
Match: A0A6G0XRT9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRT9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 8.220e-12
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGITGRKKADAARRWIKTHSISYTFVVDEFFPNPDFSF 147
            +VTND++RDHV+ I    + +A R W+K+H IS+T+V DEFFPNPDF F
Sbjct:  862 LVTNDMFRDHVENIKSNAQRNAMRDWLKSHRISFTWVGDEFFPNPDFRF 910
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BLAST of mRNA_H-canaliculatus_F_contig12636.2207.1 vs. uniprot
Match: A0A067CRV2_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CRV2_SAPPC)

HSP 1 Score: 66.6 bits (161), Expect = 1.530e-11
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGI--TGRKKADAARRWIKTHSISYTFVVDEFFPNPDFSFHQ 153
            VVTNDL+RDHV G+  TG++KA A R+W+  H IS+T+V DEF PNPDF F Q
Sbjct:  835 VVTNDLFRDHVDGLQGTGQQKA-AMRQWLSAHCISFTWVGDEFLPNPDFRFPQ 886
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BLAST of mRNA_H-canaliculatus_F_contig12636.2207.1 vs. uniprot
Match: A0A7S2D3B2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3B2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.430e-11
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGITGRKKADAARRWIKTHSISYTFVVDEFFPNPD 138
            VVTND+YRDHVKG   R+  +  + W  TH +SYT+V DEF PNP+
Sbjct:   84 VVTNDMYRDHVKGQATREDREREKEWTNTHLVSYTWVQDEFLPNPE 129
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BLAST of mRNA_H-canaliculatus_F_contig12636.2207.1 vs. uniprot
Match: K3W6K7_GLOUD (RNase NYN domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6K7_GLOUD)

HSP 1 Score: 64.3 bits (155), Expect = 2.740e-11
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 VVTNDLYRDHVKGITG-RKKADAARRWIKTHSISYTFVVDEFFPNPDFS 144
            VVTNDLYRDHV+ +TG R++  A R W+  H ISYT+V +EF PNP+FS
Sbjct:  136 VVTNDLYRDHVENMTGPRERKVAMRSWLTAHRISYTWVGNEFLPNPNFS 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12636.2207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G542_ECTSI1.540e-2494.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPQ7_9STRA2.450e-1569.39Zc3h12a-like ribonuclease NYN domain-containing pr... [more]
A0A485LSN2_9STRA6.750e-1361.22Aste57867_25204 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S2CKB1_9STRA1.940e-1259.18Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1V9YYR1_9STRA4.400e-1264.71N-acetyltransferase domain-containing protein n=1 ... [more]
A0A1V9YL36_9STRA8.210e-1262.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0XRT9_9STRA8.220e-1257.14Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067CRV2_SAPPC1.530e-1162.26Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A7S2D3B2_9STRA2.430e-1156.52Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
K3W6K7_GLOUD2.740e-1161.22RNase NYN domain-containing protein n=1 Tax=Globis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12636contigH-canaliculatus_F_contig12636:3179..3331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue3.6e-20
Seed eggNOG ortholog2880.D7G542
Preferred nameEBS1
KEGG koko:K11124,ko:K11132,ko:K18668
KEGG Pathwayko03015,map03015
GOsGO:0000018,GO:0000019,GO:0000184,GO:0000228,GO:0000723,GO:0000781,GO:0000784,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003824,GO:0004518,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005697,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007004,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010638,GO:0010639,GO:0010833,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0017148,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032207,GO:0032208,GO:0032210,GO:0032212,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034248,GO:0034249,GO:0034399,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036464,GO:0042162,GO:0042592,GO:0042886,GO:0043021,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045184,GO:0045910,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046907,GO:0048239,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051276,GO:0051641,GO:0051649,GO:0060249,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071897,GO:0071919,GO:0072695,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098687,GO:0098847,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1904356,GO:1904358,GO:1905324,GO:1990904,GO:2000112,GO:2000113,GO:2000278,GO:2000573,GO:2001251,GO:2001252
EggNOG free text desc.zinc finger CCCH-type containing
EggNOG OGsKOG2162@1,KOG2162@2759,KOG3777@1,KOG3777@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03032
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928984.1338418-CDS-H-canaliculatus_F_contig12636:3178..33311622928984.1338418-CDS-H-canaliculatus_F_contig12636:3178..3331Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12636 3179..3331 -
1696845638.2836564-CDS-H-canaliculatus_F_contig12636:3178..33311696845638.2836564-CDS-H-canaliculatus_F_contig12636:3178..3331Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12636 3179..3331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12636.2207.1prot_H-canaliculatus_F_contig12636.2207.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12636 3179..3331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12636.2207.1

>prot_H-canaliculatus_F_contig12636.2207.1 ID=prot_H-canaliculatus_F_contig12636.2207.1|Name=mRNA_H-canaliculatus_F_contig12636.2207.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=51bp
VVTNDLYRDHVKGITGRKKADAARRWIKTHSISYTFVVDEFFPNPDFSFH
Q
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mRNA from alignment at H-canaliculatus_F_contig12636:3179..3331-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12636.2207.1 ID=mRNA_H-canaliculatus_F_contig12636.2207.1|Name=mRNA_H-canaliculatus_F_contig12636.2207.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=153bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12636:3179..3331- (Hapterophycus canaliculatus Oshoro5f female)
GTGGTGACGAACGACCTCTACCGCGACCACGTTAAGGGGATCACCGGCCG
CAAGAAGGCCGACGCGGCAAGGCGGTGGATCAAGACTCACTCAATCTCGT
ACACGTTCGTGGTAGACGAGTTCTTCCCCAACCCGGACTTCTCGTTCCAC
CAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12636:3179..3331-

>mRNA_H-canaliculatus_F_contig12636.2207.1 ID=mRNA_H-canaliculatus_F_contig12636.2207.1|Name=mRNA_H-canaliculatus_F_contig12636.2207.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=306bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12636:3179..3331- (Hapterophycus canaliculatus Oshoro5f female)
GTGGTGACGAACGACCTCTACCGCGACCACGTTAAGGGGATCACCGGCCG
CAAGAAGGCCGACGCGGCAAGGCGGTGGATCAAGACTCACTCAATCTCGT
ACACGTTCGTGGTAGACGAGTTCTTCCCCAACCCGGACTTCTCGTTCCAC
CAGGTGGTGACGAACGACCTCTACCGCGACCACGTTAAGGGGATCACCGG
CCGCAAGAAGGCCGACGCGGCAAGGCGGTGGATCAAGACTCACTCAATCT
CGTACACGTTCGTGGTAGACGAGTTCTTCCCCAACCCGGACTTCTCGTTC
CACCAG
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