mRNA_H-canaliculatus_F_contig1263.2203.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1263.2203.1
Unique NamemRNA_H-canaliculatus_F_contig1263.2203.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1263.2203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1263contigH-canaliculatus_F_contig1263:4672..5102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size408
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928982.4869478-UTR-H-canaliculatus_F_contig1263:4671..46941622928982.4869478-UTR-H-canaliculatus_F_contig1263:4671..4694Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1263 4672..4694 +
1696845637.9144824-UTR-H-canaliculatus_F_contig1263:4671..46941696845637.9144824-UTR-H-canaliculatus_F_contig1263:4671..4694Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1263 4672..4694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928982.5133195-CDS-H-canaliculatus_F_contig1263:4694..51021622928982.5133195-CDS-H-canaliculatus_F_contig1263:4694..5102Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1263 4695..5102 +
1696845637.9257843-CDS-H-canaliculatus_F_contig1263:4694..51021696845637.9257843-CDS-H-canaliculatus_F_contig1263:4694..5102Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1263 4695..5102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1263.2203.1prot_H-canaliculatus_F_contig1263.2203.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1263 4695..5102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1263.2203.1

>prot_H-canaliculatus_F_contig1263.2203.1 ID=prot_H-canaliculatus_F_contig1263.2203.1|Name=mRNA_H-canaliculatus_F_contig1263.2203.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=136bp
MWRSSSGMGFPLRQATQPKWGTTNAILHKHIDNGDAMLALYFTIVLSGTR
AGHADRETGLLVRFGIQRPSQMDHEAYECPSGQGRQLRILSADMSRRRSE
QPPYLPRRAYQYRQPAGKRLCEVGGYEKTTTPGTRP
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mRNA from alignment at H-canaliculatus_F_contig1263:4672..5102+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1263.2203.1 ID=mRNA_H-canaliculatus_F_contig1263.2203.1|Name=mRNA_H-canaliculatus_F_contig1263.2203.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=431bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1263:4672..5102+ (Hapterophycus canaliculatus Oshoro5f female)
GTCGTCGATGTGCTTACACAGAAATGTGGCGTTCATCTAGCGGGATGGGA
TTCCCCTTGAGACAGGCTACCCAACCGAAATGGGGTACAACAAACGCAAT
ACTACACAAGCACATCGACAATGGGGATGCGATGCTTGCGTTGTATTTTA
CCATCGTTTTGAGCGGGACACGTGCAGGGCACGCCGACCGAGAAACTGGC
CTTTTGGTGAGATTCGGTATCCAACGCCCATCTCAAATGGATCACGAGGC
ATATGAATGCCCATCTGGACAAGGTCGCCAACTGCGAATACTTTCGGCAG
ACATGTCTCGACGTCGATCTGAACAGCCACCCTACTTGCCCAGGCGTGCA
TACCAATATCGTCAACCTGCAGGTAAAAGGCTTTGCGAGGTCGGGGGTTA
CGAAAAAACAACGACACCTGGGACACGTCCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1263:4672..5102+

>mRNA_H-canaliculatus_F_contig1263.2203.1 ID=mRNA_H-canaliculatus_F_contig1263.2203.1|Name=mRNA_H-canaliculatus_F_contig1263.2203.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=816bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1263:4672..5102+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGGCGTTCATCTAGCGGGATGGGATTCCCCTTGAGACAGGCTACCCA
ACCGAAATGGGGTACAACAAACGCAATACTACACAAGCACATCGACAATG
GGGATGCGATGCTTGCGTTGTATTTTACCATCGTTTTGAGCGGGACACGT
GCAGGGCACGCCGACCGAGAAACTGGCCTTTTGGTGAGATTCGGTATCCA
ACGCCCATCTCAAATGGATCACGAGGCATATGAATGCCCATCTGGACAAG
GTCGCCAACTGCGAATACTTTCGGCAGACATGTCTCGACGTCGATCTGAA
CAGCCACCCTACTTGCCCAGGCGTGCATACCAATATCGTCAACCTGCAGG
TAAAAGGCTTTGCGAGGTCGGGGGTTACGAAAAAACAACGACACCTGGGA
CACGTCCAATGTGGCGTTCATCTAGCGGGATGGGATTCCCCTTGAGACAG
GCTACCCAACCGAAATGGGGTACAACAAACGCAATACTACACAAGCACAT
CGACAATGGGGATGCGATGCTTGCGTTGTATTTTACCATCGTTTTGAGCG
GGACACGTGCAGGGCACGCCGACCGAGAAACTGGCCTTTTGGTGAGATTC
GGTATCCAACGCCCATCTCAAATGGATCACGAGGCATATGAATGCCCATC
TGGACAAGGTCGCCAACTGCGAATACTTTCGGCAGACATGTCTCGACGTC
GATCTGAACAGCCACCCTACTTGCCCAGGCGTGCATACCAATATCGTCAA
CCTGCAGGTAAAAGGCTTTGCGAGGTCGGGGGTTACGAAAAAACAACGAC
ACCTGGGACACGTCCA
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