mRNA_H-canaliculatus_F_contig12621.2200.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12621.2200.1
Unique NamemRNA_H-canaliculatus_F_contig12621.2200.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12621.2200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12621contigH-canaliculatus_F_contig12621:2363..3075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size715
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928982.3031387-CDS-H-canaliculatus_F_contig12621:2362..28181622928982.3031387-CDS-H-canaliculatus_F_contig12621:2362..2818Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12621 2363..2818 +
1696845637.8613284-CDS-H-canaliculatus_F_contig12621:2362..28181696845637.8613284-CDS-H-canaliculatus_F_contig12621:2362..2818Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12621 2363..2818 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928982.3202677-UTR-H-canaliculatus_F_contig12621:2818..30751622928982.3202677-UTR-H-canaliculatus_F_contig12621:2818..3075Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12621 2819..3075 +
1696845637.8708265-UTR-H-canaliculatus_F_contig12621:2818..30751696845637.8708265-UTR-H-canaliculatus_F_contig12621:2818..3075Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12621 2819..3075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12621.2200.1prot_H-canaliculatus_F_contig12621.2200.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12621 2363..2818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12621.2200.1

>prot_H-canaliculatus_F_contig12621.2200.1 ID=prot_H-canaliculatus_F_contig12621.2200.1|Name=mRNA_H-canaliculatus_F_contig12621.2200.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=152bp
KFETASRSLEHAGHLPVCALSSAPKHVPVQRLEIRIVPPSPVGVAAKGKG
VPTWFLRVEHTCKGLSPCWDATASCARERSSPSPPLLRGRSVRSLLTAAR
QVAAVCLHACLVPGTPFRAAGTNIRGRGDPKVNKHRPPSSQRGAEKQGGL
K*
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mRNA from alignment at H-canaliculatus_F_contig12621:2363..3075+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12621.2200.1 ID=mRNA_H-canaliculatus_F_contig12621.2200.1|Name=mRNA_H-canaliculatus_F_contig12621.2200.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=713bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12621:2363..3075+ (Hapterophycus canaliculatus Oshoro5f female)
AAGTTCGAAACCGCTTCGCGCAGTTTAGAGCACGCAGGGCACCTACCCGT
CTGTGCACTTTCTAGTGCTCCAAAGCACGTGCCCGTCCAACGACTGGAAA
TCAGGATCGTCCCACCGTCACCAGTAGGAGTAGCTGCAAAAGGCAAAGGC
GTTCCCACTTGGTTTCTGCGAGTCGAACACACGTGTAAAGGCCTTTCTCC
ATGCTGGGACGCGACCGCGTCTTGCGCCAGAGAACGCTCTTCGCCCTCTC
CGCCGCTGCTTCGTGGACGCAGCGTCAGGTCCTTGTTAACTGCGGCGCGG
CAAGTAGCAGCAGTGTGCTTGCACGCTTGTCTTGTACCAGGAACTCCCTT
CAGGGCCGCAGGTACGAACATCCGGGGCCGAGGAGATCCAAAAGTGAACA
AGCACAGACCCCCCTCATCACAACGCGGGGCAGAAAAACAAGGAGGATTG
AAGTAAAACTCGCGGGTAGATCCCCAGCTGCTTACATTTATTATCATGAG
CGGCCTCTGCTTCAGCTGCACTGTCCATCTACCGTAACATGAAACCGTCG
CCTTTGCATGGGTGTGTAAAGCATCATTAGTATTTCGGGGGGGAAGGGAA
AGGAAACAACACGCAGAAGACCGGACTTGACAGCAGAGGCCGGCCCTACA
CGCAAGTTAATCAAGAGCAAACGGCGAACAACCACCAATCCAAATCTCGA
ACGACATCATCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12621:2363..3075+

>mRNA_H-canaliculatus_F_contig12621.2200.1 ID=mRNA_H-canaliculatus_F_contig12621.2200.1|Name=mRNA_H-canaliculatus_F_contig12621.2200.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=912bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12621:2363..3075+ (Hapterophycus canaliculatus Oshoro5f female)
AAGTTCGAAACCGCTTCGCGCAGTTTAGAGCACGCAGGGCACCTACCCGT
CTGTGCACTTTCTAGTGCTCCAAAGCACGTGCCCGTCCAACGACTGGAAA
TCAGGATCGTCCCACCGTCACCAGTAGGAGTAGCTGCAAAAGGCAAAGGC
GTTCCCACTTGGTTTCTGCGAGTCGAACACACGTGTAAAGGCCTTTCTCC
ATGCTGGGACGCGACCGCGTCTTGCGCCAGAGAACGCTCTTCGCCCTCTC
CGCCGCTGCTTCGTGGACGCAGCGTCAGGTCCTTGTTAACTGCGGCGCGG
CAAGTAGCAGCAGTGTGCTTGCACGCTTGTCTTGTACCAGGAACTCCCTT
CAGGGCCGCAGGTACGAACATCCGGGGCCGAGGAGATCCAAAAGTGAACA
AGCACAGACCCCCCTCATCACAACGCGGGGCAGAAAAACAAGGAGGATTG
AAGTAAAAGTTCGAAACCGCTTCGCGCAGTTTAGAGCACGCAGGGCACCT
ACCCGTCTGTGCACTTTCTAGTGCTCCAAAGCACGTGCCCGTCCAACGAC
TGGAAATCAGGATCGTCCCACCGTCACCAGTAGGAGTAGCTGCAAAAGGC
AAAGGCGTTCCCACTTGGTTTCTGCGAGTCGAACACACGTGTAAAGGCCT
TTCTCCATGCTGGGACGCGACCGCGTCTTGCGCCAGAGAACGCTCTTCGC
CCTCTCCGCCGCTGCTTCGTGGACGCAGCGTCAGGTCCTTGTTAACTGCG
GCGCGGCAAGTAGCAGCAGTGTGCTTGCACGCTTGTCTTGTACCAGGAAC
TCCCTTCAGGGCCGCAGGTACGAACATCCGGGGCCGAGGAGATCCAAAAG
TGAACAAGCACAGACCCCCCTCATCACAACGCGGGGCAGAAAAACAAGGA
GGATTGAAGTAA
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