mRNA_H-canaliculatus_F_contig12619.2197.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12619.2197.1
Unique NamemRNA_H-canaliculatus_F_contig12619.2197.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12619.2197.1 vs. uniprot
Match: D8LB05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB05_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 3.900e-32
Identity = 68/83 (81.93%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:  151 PMTPRPLVVDLGVLRAGTTGRRRFNATNLNPVEVNVTIAGGGGGGEQPFASLRLVSVGPLARAPQALSEIGRHIQTRSLQNVA 399
            P  PRPLVVDLG++RAG TGRRRFN TNLNPVEVNVT  GGGG  E PFASLRLV VGPL RAPQALSEIGRHIQ RSLQN A
Sbjct:  894 PPEPRPLVVDLGIIRAGATGRRRFNVTNLNPVEVNVTNTGGGG--ELPFASLRLVGVGPLPRAPQALSEIGRHIQARSLQNTA 974
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BLAST of mRNA_H-canaliculatus_F_contig12619.2197.1 vs. uniprot
Match: A0A6H5KQA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA3_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 6.370e-31
Identity = 66/83 (79.52%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:  151 PMTPRPLVVDLGVLRAGTTGRRRFNATNLNPVEVNVTIAGGGGGGEQPFASLRLVSVGPLARAPQALSEIGRHIQTRSLQNVA 399
            P  PRPLVVDLG+LRAG TGR+RFN TNLNPVEVNVT  GGGG  E PFASLRL+ VGPL +APQALSEIGRHIQ RSLQN A
Sbjct: 1069 PPEPRPLVVDLGILRAGATGRQRFNVTNLNPVEVNVTNTGGGG--ELPFASLRLLGVGPLPQAPQALSEIGRHIQARSLQNTA 1149
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12619.2197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB05_ECTSI3.900e-3281.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQA3_9PHAE6.370e-3179.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12619contigH-canaliculatus_F_contig12619:2432..3398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue4e-28
Seed eggNOG ortholog2880.D8LB05
Preferred nameTMEM131
GOsGO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007162,GO:0008150,GO:0008285,GO:0009966,GO:0009968,GO:0010646,GO:0010648,GO:0016020,GO:0022407,GO:0022408,GO:0023051,GO:0023057,GO:0030111,GO:0030155,GO:0030178,GO:0032944,GO:0032945,GO:0033081,GO:0033083,GO:0033084,GO:0033085,GO:0033087,GO:0033088,GO:0042127,GO:0042129,GO:0042130,GO:0044424,GO:0044464,GO:0045580,GO:0045581,GO:0045595,GO:0045596,GO:0045619,GO:0045620,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050670,GO:0050672,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0051093,GO:0051239,GO:0051241,GO:0051249,GO:0051250,GO:0060828,GO:0065007,GO:0070663,GO:0070664,GO:0071944,GO:0090090,GO:1902105,GO:1902106,GO:1903037,GO:1903038,GO:1903706,GO:1903707,GO:2000026
EggNOG free text desc.negative regulation of immature T cell proliferation in thymus
EggNOG OGsKOG3620@1,KOG3620@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size496
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928982.0421662-CDS-H-canaliculatus_F_contig12619:2433..25501622928982.0421662-CDS-H-canaliculatus_F_contig12619:2433..2550Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12619 2434..2550 -
1696845637.7722864-CDS-H-canaliculatus_F_contig12619:2433..25501696845637.7722864-CDS-H-canaliculatus_F_contig12619:2433..2550Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12619 2434..2550 -
1622928982.0580757-CDS-H-canaliculatus_F_contig12619:3023..33981622928982.0580757-CDS-H-canaliculatus_F_contig12619:3023..3398Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12619 3024..3398 -
1696845637.7901254-CDS-H-canaliculatus_F_contig12619:3023..33981696845637.7901254-CDS-H-canaliculatus_F_contig12619:3023..3398Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12619 3024..3398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12619.2197.1prot_H-canaliculatus_F_contig12619.2197.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12619 2434..3398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12619.2197.1

>prot_H-canaliculatus_F_contig12619.2197.1 ID=prot_H-canaliculatus_F_contig12619.2197.1|Name=mRNA_H-canaliculatus_F_contig12619.2197.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=164bp
RSTPATVGSQGQQPAKQDGGGGGDDDDDDGDNGRDDDDNDLSSPSAPPPQ
PMTPRPLVVDLGVLRAGTTGRRRFNATNLNPVEVNVTIAGGGGGGEQPFA
SLRLVSVGPLARAPQALSEIGRHIQTRSLQNVAAAAASTTTTSSSSPPGP
LQGDGAEPGRLASP
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mRNA from alignment at H-canaliculatus_F_contig12619:2432..3398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12619.2197.1 ID=mRNA_H-canaliculatus_F_contig12619.2197.1|Name=mRNA_H-canaliculatus_F_contig12619.2197.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=967bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12619:2432..3398- (Hapterophycus canaliculatus Oshoro5f female)
AGGTCTACCCCGGCGACTGTTGGCTCACAGGGACAGCAGCCAGCAAAACA
AGACGGCGGCGGTGGCGGCGACGACGACGACGATGACGGTGACAACGGCC
GAGACGACGACGACAATGACCTTTCGTCGCCCTCCGCACCGCCGCCGCAG
CCGATGACCCCCCGGCCCCTCGTGGTCGATCTCGGTGTCCTCCGGGCGGG
GACCACCGGCAGACGGCGGTTCAACGCCACGAACCTCAACCCCGTTGAGG
TGAACGTGACGATTGCAGGCGGGGGCGGGGGCGGAGAGCAGCCTTTCGCT
TCTCTGCGGCTCGTCAGCGTGGGCCCGCTGGCCCGAGCGCCGCAGGCTCT
GTCCGAGATCGGGCGACACATCCAGGTGAATTTTTGTGGTGGGGTGGTGG
ATGGTGGCGGTTGTGGCGGTGGTGGTGGTGGTGGGAGAGCGGCTTGGTTG
ATGCGACTGCGGTAGTCTTGCTGGTGGTGTTGCTTCTTCTGCGGCGTCGG
TGTCGCTGTGCTGGGTGTGGTGGCCCGGAGGGCTCACGGTTTTCGATTTC
GCGCGCGCGCTGCTTGGTGATGGGCGTGCGGCGCTCGTTTCTCGTGTCTC
GGCATCGTCTCGTCGCCGGAGCGGCGTCCCGCCTATTTCGAACGTGTCTT
GGTCTTTCTCGCCATGTACCATGACGTCCTGAGCATCGCGACAAGGCACC
CATTTCCCATTTCAACTCGCCCCAGCGCATCAAATCCCCCCCGCCCCCCC
CCTCCTCTCCTGAGGTGCAGGACAACCATGATACTCCCAAATTCCAATGA
ACCCCAACCCAAAAAACGCCTCGTTATCTCCCGTGTCTCCGAGGACAGAC
GCGCTCTCTCCAGAACGTAGCCGCAGCGGCGGCGTCAACCACTACGACCT
CATCTTCCAGTCCGCCGGGACCCCTGCAAGGCGACGGCGCGGAGCCGGGT
CGCCTGGCATCTCCCAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12619:2432..3398-

>mRNA_H-canaliculatus_F_contig12619.2197.1 ID=mRNA_H-canaliculatus_F_contig12619.2197.1|Name=mRNA_H-canaliculatus_F_contig12619.2197.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=984bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12619:2432..3398- (Hapterophycus canaliculatus Oshoro5f female)
AGGTCTACCCCGGCGACTGTTGGCTCACAGGGACAGCAGCCAGCAAAACA
AGACGGCGGCGGTGGCGGCGACGACGACGACGATGACGGTGACAACGGCC
GAGACGACGACGACAATGACCTTTCGTCGCCCTCCGCACCGCCGCCGCAG
CCGATGACCCCCCGGCCCCTCGTGGTCGATCTCGGTGTCCTCCGGGCGGG
GACCACCGGCAGACGGCGGTTCAACGCCACGAACCTCAACCCCGTTGAGG
TGAACGTGACGATTGCAGGCGGGGGCGGGGGCGGAGAGCAGCCTTTCGCT
TCTCTGCGGCTCGTCAGCGTGGGCCCGCTGGCCCGAGCGCCGCAGGCTCT
GTCCGAGATCGGGCGACACATCCAGAGGTCTACCCCGGCGACTGTTGGCT
CACAGGGACAGCAGCCAGCAAAACAAGACGGCGGCGGTGGCGGCGACGAC
GACGACGATGACGGTGACAACGGCCGAGACGACGACGACAATGACCTTTC
GTCGCCCTCCGCACCGCCGCCGCAGCCGATGACCCCCCGGCCCCTCGTGG
TCGATCTCGGTGTCCTCCGGGCGGGGACCACCGGCAGACGGCGGTTCAAC
GCCACGAACCTCAACCCCGTTGAGGTGAACGTGACGATTGCAGGCGGGGG
CGGGGGCGGAGAGCAGCCTTTCGCTTCTCTGCGGCTCGTCAGCGTGGGCC
CGCTGGCCCGAGCGCCGCAGGCTCTGTCCGAGATCGGGCGACACATCCAG
ACGCGCTCTCTCCAGAACGTAGCCGCAGCGGCGGCGTCAACCACTACGAC
CTCATCTTCCAGTCCGCCGGGACCCCTGCAAGGCGACGGCGCGGAGCCGG
GTCGCCTGGCATCTCCCACGCGCTCTCTCCAGAACGTAGCCGCAGCGGCG
GCGTCAACCACTACGACCTCATCTTCCAGTCCGCCGGGACCCCTGCAAGG
CGACGGCGCGGAGCCGGGTCGCCTGGCATCTCCC
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