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Homology
BLAST of mRNA_H-canaliculatus_F_contig12610.2193.1 vs. uniprot
Match: D7FTS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS6_ECTSI) HSP 1 Score: 260 bits (664), Expect = 2.040e-78 Identity = 193/361 (53.46%), Postives = 223/361 (61.77%), Query Frame = 1
Query: 4 EQRGVLISEKRDKAAQVDEMRQGLRRMRLAARLGVAARDLAQETVKIPREAIGRVIGKKRAALTQLEKECRVSVTEEAPRFEPAAPRRQPGVSSPDSNPPSSTCGSGSSXXXXXXXXXXXXXXXXXXXXXXXXGGPLLLHVSGTREGVAEAGRRLDLTIRNTETVLTAAPPLAAALRVSKRALLLRIEGEFRVKIF-VGTASVVPGSGVGXXXXXXXXXXXXXXXXXXXQPEHQPRERVSAGAISGAVAAXXXSGRVVKVTISGLPENVELARAYVAELDCLELVVPVERKSLSAICGVERANIQQMESDFGVFLEAPKGVPRVVLMGVREDVEAAAEKIREISYEFRETEQRWTVEPHQV 1083
+QR VL +EKRDK AQ+ EMRQGLRR+RLA RLGVA RDLAQE++++PREA GRVIGKKRAALTQLE+ECRVS+ E +VSGTREGV EA RRLD+TIR TE V+ A+PPLAAALR SKRALLLR+E E VKIF VG A+ XXXXXXXXXXXXXXXXXXX G VA V VT+ GLP+ ++ ARA + LDCLEL VPV RKSL +I G AN+QQMES++GV L+ GV RVVLMGVR VEAAAEKIR IS+EFR+TE+RW VEP+QV
Sbjct: 99 DQRAVLFAEKRDKTAQMAEMRQGLRRLRLADRLGVAPRDLAQESIEVPREATGRVIGKKRAALTQLEEECRVSIVTE--------------------------------------------------------------NVSGTREGVEEARRRLDITIRTTEAVVKASPPLAAALRASKRALLLRLEKEHGVKIFIVGPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGQVA--------VDVTVCGLPKEIDAARAELEGLDCLELAVPVTRKSLPSIFGSGGANLQQMESEYGVCLDVQTGVSRVVLMGVRAGVEAAAEKIRAISHEFRDTEERWPVEPYQV 389
BLAST of mRNA_H-canaliculatus_F_contig12610.2193.1 vs. uniprot
Match: A0A6H5L0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D2_9PHAE) HSP 1 Score: 256 bits (654), Expect = 7.300e-73 Identity = 205/363 (56.47%), Postives = 242/363 (66.67%), Query Frame = 1
Query: 4 EQRGVLISEKRDKAAQVDEMRQGLRRMRLAARLGVAARDLAQETVKIPREAIGRVIGKKRAALTQLEKECRVSVTEEAPRFEPAAPRRQPGVSSPDSNPPSSTCGSGSSXXXXXXXXXXXXXXXXXXXXXXXXGGPLLLHVSGTREGVAEAGRRLDLTIRNTETVLTAAPPLAAALRVSKRALLLRIEGEFRVKIFV--GTASVVPGSGVGXXXXXXXXXXXXXXXXXXXQPEHQPRERVSAGAISGAVAAXXXSGRV-VKVTISGLPENVELARAYVAELDCLELVVPVERKSLSAICGVERANIQQMESDFGVFLEAPKGVPRVVLMGVREDVEAAAEKIREISYEFRETEQRWTVEPHQV 1083
+QR +L +EKRDK AQ+ EMRQGLRR+RLA RLGVA RDLAQE++++PREA GRVIGKKRAALTQLE+ECRV + E R CGS ++ XXXXXXXXXXX L+LH+SGTREGV EA RRLD+TIR TE V+ A+P LAAALR S+RALLLR+E E VKIF+ A XXXXXXXXXXXXXXXXXXX XXX G+V V VT+ GLP+ ++ ARA + LDCLEL VPV RK+L +I G AN+QQMES++GV L+ GV RVVLMGVR VEAAAEKIR IS+EFR+TE+RW VEP+QV
Sbjct: 99 DQRAMLFTEKRDKTAQMAEMRQGLRRLRLADRLGVAPRDLAQESIEVPREATGRVIGKKRAALTQLEEECRVLIVTENNRV----------------------CGSTAAARIWPDKPHGXXXXXXXXXXXDT----LILHLSGTREGVEEARRRLDVTIRTTEAVVKASPALAAALRASRRALLLRLEKEHGVKIFIVGPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGQVAVDVTVCGLPKGIDAARAELEGLDCLELAVPVTRKALPSIFGSGGANLQQMESEYGVCLDVQTGVSRVVLMGVRAGVEAAAEKIRAISHEFRDTEERWPVEPYQV 435
BLAST of mRNA_H-canaliculatus_F_contig12610.2193.1 vs. uniprot
Match: A0A835Z3V4_9STRA (KH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3V4_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 2.000e-6 Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 1 QEQRGVLISEKRDKAAQVDEMRQGLRRMRLAARLGVAARDLAQETVKIPREAIGRVIGKKRAALTQLEKECRV 219
Q++ G LI E + +V+E+ +GL ++ LA + GV DL TV +P + IGR+IG+ RAAL LEK+C V
Sbjct: 188 QDKVGALIEESKANTEKVNELSRGLAKVHLAVKAGVGVADLVTATVHVPSDKIGRIIGRSRAALADLEKDCGV 260
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 263.5 |
| Seed ortholog evalue | 1.5e-67 |
| Seed eggNOG ortholog | 2880.D7FTS6 |
| EggNOG free text desc. | K homology RNA-binding domain |
| EggNOG OGs | 28HET@1,2QPSV@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1083 |
| Cds size | 1083 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622928981.6278036-CDS-H-canaliculatus_F_contig12610:404..569 | 1622928981.6278036-CDS-H-canaliculatus_F_contig12610:404..569 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12610 405..569 + |
| 1696845637.6035125-CDS-H-canaliculatus_F_contig12610:404..569 | 1696845637.6035125-CDS-H-canaliculatus_F_contig12610:404..569 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12610 405..569 + |
| 1622928981.6436229-CDS-H-canaliculatus_F_contig12610:919..996 | 1622928981.6436229-CDS-H-canaliculatus_F_contig12610:919..996 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12610 920..996 + |
| 1696845637.6182861-CDS-H-canaliculatus_F_contig12610:919..996 | 1696845637.6182861-CDS-H-canaliculatus_F_contig12610:919..996 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12610 920..996 + |
| 1622928981.6575093-CDS-H-canaliculatus_F_contig12610:1487..1910 | 1622928981.6575093-CDS-H-canaliculatus_F_contig12610:1487..1910 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12610 1488..1910 + |
| 1696845637.6306102-CDS-H-canaliculatus_F_contig12610:1487..1910 | 1696845637.6306102-CDS-H-canaliculatus_F_contig12610:1487..1910 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12610 1488..1910 + |
| 1622928981.670463-CDS-H-canaliculatus_F_contig12610:1958..2217 | 1622928981.670463-CDS-H-canaliculatus_F_contig12610:1958..2217 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12610 1959..2217 + |
| 1696845637.6414418-CDS-H-canaliculatus_F_contig12610:1958..2217 | 1696845637.6414418-CDS-H-canaliculatus_F_contig12610:1958..2217 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12610 1959..2217 + |
| 1622928981.6816506-CDS-H-canaliculatus_F_contig12610:2774..2933 | 1622928981.6816506-CDS-H-canaliculatus_F_contig12610:2774..2933 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12610 2775..2933 + |
| 1696845637.6555634-CDS-H-canaliculatus_F_contig12610:2774..2933 | 1696845637.6555634-CDS-H-canaliculatus_F_contig12610:2774..2933 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12610 2775..2933 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12610.2193.1 >prot_H-canaliculatus_F_contig12610.2193.1 ID=prot_H-canaliculatus_F_contig12610.2193.1|Name=mRNA_H-canaliculatus_F_contig12610.2193.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=361bp
QEQRGVLISEKRDKAAQVDEMRQGLRRMRLAARLGVAARDLAQETVKIPR EAIGRVIGKKRAALTQLEKECRVSVTEEAPRFEPAAPRRQPGVSSPDSNP PSSTCGSGSSSAVRAGGTGSGNGGGGGGGGGGTGGGPLLLHVSGTREGVA EAGRRLDLTIRNTETVLTAAPPLAAALRVSKRALLLRIEGEFRVKIFVGT ASVVPGSGVGDGAGGSGSADRPVGGGGGGQPEHQPRERVSAGAISGAVAA GAASGRVVKVTISGLPENVELARAYVAELDCLELVVPVERKSLSAICGVE RANIQQMESDFGVFLEAPKGVPRVVLMGVREDVEAAAEKIREISYEFRET EQRWTVEPHQV back to topmRNA from alignment at H-canaliculatus_F_contig12610:405..2933+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig12610.2193.1 ID=mRNA_H-canaliculatus_F_contig12610.2193.1|Name=mRNA_H-canaliculatus_F_contig12610.2193.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2529bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12610:405..2933+ (Hapterophycus canaliculatus Oshoro5f female) CAGGAACAGCGCGGAGTGCTGATCTCAGAGAAACGGGATAAGGCTGCCCA
GGTCGACGAGATGAGGCAAGGGCTCCGCCGCATGCGCCTGGCGGCCCGCC
TCGGGGTGGCGGCGCGTGACCTGGCCCAGGAGACCGTCAAGATCCCTCGC
GAAGCGATCGGGAGGGTGAGCAAACACGCGAGAAAGCGAGGGAAATTCGA
GCTGCCACCCCTCGAGCAAATCTGCAAATCAAGAAATGCAGAGTTTTGTA
TCTAAAAAGTAAAAGAGTTGAGGCGTGTGTTGCGCTTGTGAGTGGGAGGT
TCCGCCATGCCCACGATTTCGCCGCGGGCGGCTGTTATTGCATCTCCAGT
CGCTTGACGTTCCGTCGTGGCTGGCTGGAACCCCGTGGTCGCCCAAGAGA
AGAGAGATAAGGATTTCTCGTTGTGTGGTCGCGTGCTGCCGATTCTCCTC
TTGCTGCTGCTGCGTATCTCACCCCGCCACCGCCTGCCATCTCCTGTGCC
TTCGATCGAACGCAGGTGATCGGGAAGAAGAGGGCGGCACTCACCCAGCT
CGAGAAAGAGTGCAGGGTTTCCGTCACCGAAGAAGCGCCCAGGTAAGGCC
TTCCTGCCCTCCTCTCGCTTGGAGTAAAAGTGTACTCCTAACAAGAGTGC
CATTGAGGTCCGTCGAGCTATCGGGGTTGTAATCCCTGTAAGTAGCGCTG
CTCCCATACGATGGATCGACTTATAGGCAGCGCATGAGCGGGGCTTGGTT
TTGAATGGAAATGTGTGCCATGATTTCCAGGTGTATAAAACAGTGCTTAG
CTGTCACTCCTTGAGAAAGGGTGAGAAAAGCGTGATGGATGGCTACGGAG
GGATTCGAACCCAGGATACGTTCCTAACACCTCTTTTCCCAGATCGCCCA
CCTCTTTGGCCCGGCGTAAACCGAACAAGCTCTCCCCTTGGCTCGTACAG
GATTGCCAGCTTTCACAGCGGCACGCTACAACCACCTTTCCTCTCGACCC
CCGATCGAAACAAAAATCGAATCACGCCCGCCACCTCTCCCGCTGATTCC
CCCCGGGGTCTTGGTGCACCACTTTCCTTTCAGGTTCGAACCCGCAGCTC
CGCGGCGGCAGCCCGGAGTGAGCTCCCCCGACTCCAACCCCCCTTCCTCC
ACCTGCGGAAGCGGCAGCAGCTCCGCTGTTCGTGCGGGCGGCACCGGCAG
CGGCAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCACCGGCGGCGGCC
CTCTCCTCCTTCACGTGAGCGGCACCCGAGAAGGAGTGGCTGAGGCCGGC
CGCAGGCTCGACCTCACCATCCGCAACACGGAAACGGTCCTCACGGCCGC
ACCGCCGCTCGCGGCCGCGCTGCGCGTCTCCAAGCGCGCGCTATTGCTCC
GCATCGAAGGGGAGTTCCGGGTGAAGATTTTCGTCGGGACTGCCAGTGTC
GTCCCGGGCTCAGGCGTCGGCGACGGCGCCGGCGGTAGCGGCAGCGCCGA
CCGCCCGTCGACCGAAGGGAAGAACAGGAGCGGCGGCGGCGGCGGCGGCG
GCAGCGTTGGGGGCGGCGGCGGGGGTCAACCGGAGCATCAGCCGCGGGAG
AGAGTAAGTGCGGGGGCGATCTCGGGGGCGGTGGCGGCGGGGGCGGCAAG
CGGGAGGGTGGTGAAGGTGACCATAAGCGGGTTGCCCGAGAACGTAGAAC
TGGCGCGAGCGTACGTGGCGGAGCTCGACTGCCTGGAGCTGGTGGTGCCG
GTGGAACGAAAGTCTCTGTCCGCCATCTGCGGTGTCGAGCGTGCAAACAT
TCAGCAAATGGAGGTAAGGGAGATGCGTGGAAGCCAAAAGGGATTCGGGG
AAATCGAAGTCGCCTGAGAGAAGGCCGCAGATCATGCAAGCAGCCCGTCC
CCTTGAAACATGTGCCGTCGATTCGGGTCGAACGGCGACTCCCCGCTTCG
TCCACCATGCTCGCTTGCGGCCTCGCCTTCGGAGGCTTGTCCCGTTTGAG
CCTGAATGAAACCGCGAGTCTTTTCGTTCCGGAGAGCACGTGGAGGAGAG
GGGAAGGGGAGGGGAGGGGAAGGGGAGGGGAGTTACAAAACATGTGGCGC
GCGGCAGGTACGAAGAACACGAGCTGCTGTCATCGCGCCACCATCCTACA
AGCCGCACATCGCCAAACAAACGCACGCCCGCCTGGTCTACCTTTTTACT
TCGCTCGTCAACTTTCTTCTCTTCGCCGACTCCCATCGGGTCTCCCTCGA
ACGCGCTGCTATCGTTCCCGCGGCCATTCCTTGTGCTGCATGCACCTCTT
CCATATCTCCTTACAACATGATCCCGCGTCACCCCCGCACCGCAACGAAC
ACTCAAATTGTGGGTCCAAGTCGGATTTCGGTGTCTTCCTCGAGGCGCCG
AAGGGCGTGCCTAGGGTTGTGTTGATGGGGGTTCGCGAGGACGTGGAAGC
GGCTGCCGAAAAAATCCGAGAAATTTCCTATGAGTTCAGGGAGACGGAGC
AGCGGTGGACGGTTGAGCCCCACCAGGTA back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig12610:405..2933+ >mRNA_H-canaliculatus_F_contig12610.2193.1 ID=mRNA_H-canaliculatus_F_contig12610.2193.1|Name=mRNA_H-canaliculatus_F_contig12610.2193.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2166bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12610:405..2933+ (Hapterophycus canaliculatus Oshoro5f female) CAGGAACAGCGCGGAGTGCTGATCTCAGAGAAACGGGATAAGGCTGCCCA GGTCGACGAGATGAGGCAAGGGCTCCGCCGCATGCGCCTGGCGGCCCGCC TCGGGGTGGCGGCGCGTGACCTGGCCCAGGAGACCGTCAAGATCCCTCGC GAAGCGATCGGGAGGCAGGAACAGCGCGGAGTGCTGATCTCAGAGAAACG GGATAAGGCTGCCCAGGTCGACGAGATGAGGCAAGGGCTCCGCCGCATGC GCCTGGCGGCCCGCCTCGGGGTGGCGGCGCGTGACCTGGCCCAGGAGACC GTCAAGATCCCTCGCGAAGCGATCGGGAGGGTGATCGGGAAGAAGAGGGC GGCACTCACCCAGCTCGAGAAAGAGTGCAGGGTTTCCGTCACCGAAGAAG CGCCCAGGTGATCGGGAAGAAGAGGGCGGCACTCACCCAGCTCGAGAAAG AGTGCAGGGTTTCCGTCACCGAAGAAGCGCCCAGGTTCGAACCCGCAGCT CCGCGGCGGCAGCCCGGAGTGAGCTCCCCCGACTCCAACCCCCCTTCCTC CACCTGCGGAAGCGGCAGCAGCTCCGCTGTTCGTGCGGGCGGCACCGGCA GCGGCAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCACCGGCGGCGGC CCTCTCCTCCTTCACGTGAGCGGCACCCGAGAAGGAGTGGCTGAGGCCGG CCGCAGGCTCGACCTCACCATCCGCAACACGGAAACGGTCCTCACGGCCG CACCGCCGCTCGCGGCCGCGCTGCGCGTCTCCAAGCGCGCGCTATTGCTC CGCATCGAAGGGGAGTTCCGGGTGAAGATTTTCGTCGGGACTGCCAGTGT CGTCCCGGGCTCAGGCGTCGGCGACGGCGCCGGCGGTAGCGGCAGCGCCG ACCGCCCGTTCGAACCCGCAGCTCCGCGGCGGCAGCCCGGAGTGAGCTCC CCCGACTCCAACCCCCCTTCCTCCACCTGCGGAAGCGGCAGCAGCTCCGC TGTTCGTGCGGGCGGCACCGGCAGCGGCAACGGCGGCGGCGGCGGCGGCG GCGGCGGCGGCACCGGCGGCGGCCCTCTCCTCCTTCACGTGAGCGGCACC CGAGAAGGAGTGGCTGAGGCCGGCCGCAGGCTCGACCTCACCATCCGCAA CACGGAAACGGTCCTCACGGCCGCACCGCCGCTCGCGGCCGCGCTGCGCG TCTCCAAGCGCGCGCTATTGCTCCGCATCGAAGGGGAGTTCCGGGTGAAG ATTTTCGTCGGGACTGCCAGTGTCGTCCCGGGCTCAGGCGTCGGCGACGG CGCCGGCGGTAGCGGCAGCGCCGACCGCCCCGTTGGGGGCGGCGGCGGGG GTCAACCGGAGCATCAGCCGCGGGAGAGAGTAAGTGCGGGGGCGATCTCG GGGGCGGTGGCGGCGGGGGCGGCAAGCGGGAGGGTGGTGAAGGTGACCAT AAGCGGGTTGCCCGAGAACGTAGAACTGGCGCGAGCGTACGTGGCGGAGC TCGACTGCCTGGAGCTGGTGGTGCCGGTGGAACGAAAGTCTCTGTCCGCC ATCTGCGGTGTCGAGCGTGCAAACATTCAGCAAATGGAGCGTTGGGGGCG GCGGCGGGGGTCAACCGGAGCATCAGCCGCGGGAGAGAGTAAGTGCGGGG GCGATCTCGGGGGCGGTGGCGGCGGGGGCGGCAAGCGGGAGGGTGGTGAA GGTGACCATAAGCGGGTTGCCCGAGAACGTAGAACTGGCGCGAGCGTACG TGGCGGAGCTCGACTGCCTGGAGCTGGTGGTGCCGGTGGAACGAAAGTCT CTGTCCGCCATCTGCGGTGTCGAGCGTGCAAACATTCAGCAAATGGAGTC GGATTTCGGTGTCTTCCTCGAGGCGCCGAAGGGCGTGCCTAGGGTTGTGT TGATGGGGGTTCGCGAGGACGTGGAAGCGGCTGCCGAAAAAATCCGAGAA ATTTCCTATGAGTTCAGGGAGACGGAGCAGCGGTGGACGGTTGAGCCCCA CCAGGTATCGGATTTCGGTGTCTTCCTCGAGGCGCCGAAGGGCGTGCCTA GGGTTGTGTTGATGGGGGTTCGCGAGGACGTGGAAGCGGCTGCCGAAAAA ATCCGAGAAATTTCCTATGAGTTCAGGGAGACGGAGCAGCGGTGGACGGT TGAGCCCCACCAGGTA back to top
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