mRNA_H-canaliculatus_F_contig12603.2186.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12603.2186.1
Unique NamemRNA_H-canaliculatus_F_contig12603.2186.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12603.2186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12603contigH-canaliculatus_F_contig12603:1733..2597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size202
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928980.6646967-CDS-H-canaliculatus_F_contig12603:1732..18151622928980.6646967-CDS-H-canaliculatus_F_contig12603:1732..1815Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12603 1733..1815 -
1696845637.182354-CDS-H-canaliculatus_F_contig12603:1732..18151696845637.182354-CDS-H-canaliculatus_F_contig12603:1732..1815Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12603 1733..1815 -
1622928980.683103-CDS-H-canaliculatus_F_contig12603:2479..25971622928980.683103-CDS-H-canaliculatus_F_contig12603:2479..2597Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12603 2480..2597 -
1696845637.193546-CDS-H-canaliculatus_F_contig12603:2479..25971696845637.193546-CDS-H-canaliculatus_F_contig12603:2479..2597Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12603 2480..2597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12603.2186.1prot_H-canaliculatus_F_contig12603.2186.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12603 1733..2597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12603.2186.1

>prot_H-canaliculatus_F_contig12603.2186.1 ID=prot_H-canaliculatus_F_contig12603.2186.1|Name=mRNA_H-canaliculatus_F_contig12603.2186.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=67bp
MDVKEEAVDLVVLAKDTRTKGTMARAAILVHTGVPNRTPDTATTGHRNDG
TSRDGISCTCCECCVGS
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mRNA from alignment at H-canaliculatus_F_contig12603:1733..2597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12603.2186.1 ID=mRNA_H-canaliculatus_F_contig12603.2186.1|Name=mRNA_H-canaliculatus_F_contig12603.2186.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=865bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12603:1733..2597- (Hapterophycus canaliculatus Oshoro5f female)
ATGGACGTGAAGGAGGAGGCGGTGGATTTGGTGGTCCTGGCGAAGGATAC
CAGAACCAAGGGTACCATGGCCAGGGCGGCAATTCTGGTGCATACGGGGG
TCCCCAACAGAACCCCAGGTGGGATGACGATGACGCATGGGACTGCGGGT
ATGCTTATGGCAAGATAGCAGCTCCATCCACGCAGGGTTATGACAACGAA
AGAGTAGATCAGATGAAAGCTTTGGAGCCTGTCATATGTCAACAAGATGA
GTCTGCAAGTGAACCGAAAGTGCAACCCACAGTACAAATGCCACAGAGTG
AAGAGAAGACTCAACGAAACGAAATGACCACTCCTGAGCCTCTATTGACA
AAGGGACCGGAAAAAAATCTCACGCGGACGTACGTTGAAGCCGCTAAAGC
GACGCCTGGAACCGAAAAGCAGGTCATGAACAGTGTCCAATCAGTGCCAT
CGTTGCAGCCGGTTTTATACGATTCAGACACTTTAACGAAGGAAGAGATT
CGAAACATCACGCGTGAGTACGCCAAGTTTCAAACTAGTAGCCTGATGCG
ATTGCCGAAACTGCCACTGAATCAGTCGGATGATGTGTCGGAGCAAGTCC
AATTTTCTACGACTCTGTACAACAACGTGGTGAACGTTCGAAATGCAGTA
GGGGATATTACGCAGACCAAGGATTGGGTTCGGGGATGGGAAAACGTAAT
TGAAAAACATGTGATCAATGCAGTCTCCTCTGGAACTGAATACACCGGAC
TCAAACGTCAAATTTCCGCCGCTTTTGACCAGACACGGCAACAACTGGAC
ACCGGAATGACGGGACCAGCAGGGATGGAATATCTTGTACGTGCTGTGAG
TGCTGCGTTGGGTCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12603:1733..2597-

>mRNA_H-canaliculatus_F_contig12603.2186.1 ID=mRNA_H-canaliculatus_F_contig12603.2186.1|Name=mRNA_H-canaliculatus_F_contig12603.2186.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=402bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12603:1733..2597- (Hapterophycus canaliculatus Oshoro5f female)
ATGGACGTGAAGGAGGAGGCGGTGGATTTGGTGGTCCTGGCGAAGGATAC
CAGAACCAAGGGTACCATGGCCAGGGCGGCAATTCTGGTGCATACGGGGG
TCCCCAACAGAACCCCAGATGGACGTGAAGGAGGAGGCGGTGGATTTGGT
GGTCCTGGCGAAGGATACCAGAACCAAGGGTACCATGGCCAGGGCGGCAA
TTCTGGTGCATACGGGGGTCCCCAACAGAACCCCAGACACGGCAACAACT
GGACACCGGAATGACGGGACCAGCAGGGATGGAATATCTTGTACGTGCTG
TGAGTGCTGCGTTGGGTCTACACGGCAACAACTGGACACCGGAATGACGG
GACCAGCAGGGATGGAATATCTTGTACGTGCTGTGAGTGCTGCGTTGGGT
CT
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