mRNA_H-canaliculatus_F_contig126.2179.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig126.2179.1
Unique NamemRNA_H-canaliculatus_F_contig126.2179.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig126.2179.1 vs. uniprot
Match: A0A6H5J5L7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5L7_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 6.760e-6
Identity = 33/68 (48.53%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:  223 MVRQILRLSHPRRQGANSTRGDSSRTPTSTKTMAMMTPECRARVIARIAAGLGIMSVKEADVAIRKHI 426
            MVRQILRL+         T         S  T    TPECRAR IA+ A  LGI+S KEAD+ IRKH+
Sbjct:    1 MVRQILRLTRSDSYSPTKTTTPCGPGRASPATAETTTPECRARGIAKAATSLGIISAKEADIVIRKHV 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig126.2179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J5L7_9PHAE6.760e-648.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig126contigH-canaliculatus_F_contig126:9462..13002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons6
Model size1359
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig126.2179.1prot_H-canaliculatus_F_contig126.2179.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig126 10508..12320 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928978.774425-UTR-H-canaliculatus_F_contig126:9461..97991622928978.774425-UTR-H-canaliculatus_F_contig126:9461..9799Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig126 9462..9799 -
1696845636.1668463-UTR-H-canaliculatus_F_contig126:9461..97991696845636.1668463-UTR-H-canaliculatus_F_contig126:9461..9799Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig126 9462..9799 -
1622928978.7891889-UTR-H-canaliculatus_F_contig126:9861..101711622928978.7891889-UTR-H-canaliculatus_F_contig126:9861..10171Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig126 9862..10171 -
1696845636.1773317-UTR-H-canaliculatus_F_contig126:9861..101711696845636.1773317-UTR-H-canaliculatus_F_contig126:9861..10171Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig126 9862..10171 -
1622928978.8043764-UTR-H-canaliculatus_F_contig126:10468..105071622928978.8043764-UTR-H-canaliculatus_F_contig126:10468..10507Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig126 10469..10507 -
1696845636.1861382-UTR-H-canaliculatus_F_contig126:10468..105071696845636.1861382-UTR-H-canaliculatus_F_contig126:10468..10507Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig126 10469..10507 -
1622928978.8677833-UTR-H-canaliculatus_F_contig126:12320..124071622928978.8677833-UTR-H-canaliculatus_F_contig126:12320..12407Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig126 12321..12407 -
1696845636.2286017-UTR-H-canaliculatus_F_contig126:12320..124071696845636.2286017-UTR-H-canaliculatus_F_contig126:12320..12407Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig126 12321..12407 -
1622928978.8809884-UTR-H-canaliculatus_F_contig126:12867..130021622928978.8809884-UTR-H-canaliculatus_F_contig126:12867..13002Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig126 12868..13002 -
1696845636.2369428-UTR-H-canaliculatus_F_contig126:12867..130021696845636.2369428-UTR-H-canaliculatus_F_contig126:12867..13002Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig126 12868..13002 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928978.8164587-CDS-H-canaliculatus_F_contig126:10507..105391622928978.8164587-CDS-H-canaliculatus_F_contig126:10507..10539Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig126 10508..10539 -
1696845636.1957-CDS-H-canaliculatus_F_contig126:10507..105391696845636.1957-CDS-H-canaliculatus_F_contig126:10507..10539Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig126 10508..10539 -
1622928978.8325524-CDS-H-canaliculatus_F_contig126:11619..118361622928978.8325524-CDS-H-canaliculatus_F_contig126:11619..11836Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig126 11620..11836 -
1696845636.2050095-CDS-H-canaliculatus_F_contig126:11619..118361696845636.2050095-CDS-H-canaliculatus_F_contig126:11619..11836Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig126 11620..11836 -
1622928978.8568292-CDS-H-canaliculatus_F_contig126:12119..123201622928978.8568292-CDS-H-canaliculatus_F_contig126:12119..12320Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig126 12120..12320 -
1696845636.2184517-CDS-H-canaliculatus_F_contig126:12119..123201696845636.2184517-CDS-H-canaliculatus_F_contig126:12119..12320Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig126 12120..12320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig126.2179.1

>prot_H-canaliculatus_F_contig126.2179.1 ID=prot_H-canaliculatus_F_contig126.2179.1|Name=mRNA_H-canaliculatus_F_contig126.2179.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=150bp
MVRQILRLSHPRRQGANSTRGDSSRTPTSTKTMAMMTPECRARVIARIAA
GLGIMSVKEADVAIRKHILLGGARSGLTPGPADASSPRFPQEHHQQQQQY
EEEDEGNSDNLSSEGEHEGGGGGGGGGGRGGGEEEGEEEGCGEARAEAF*
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mRNA from alignment at H-canaliculatus_F_contig126:9462..13002-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig126.2179.1 ID=mRNA_H-canaliculatus_F_contig126.2179.1|Name=mRNA_H-canaliculatus_F_contig126.2179.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3541bp|location=Sequence derived from alignment at H-canaliculatus_F_contig126:9462..13002- (Hapterophycus canaliculatus Oshoro5f female)
GTCCTCACTGCGAAAGAGGTTCTGCAAGATCTTGAAAAGGGAAAGGTCGA
TCGTATACGACGGCGATCGTTCAGACGGACTGCACGAAGGATCAAGGGTG
CAAAGCTAGGGCTGAGTGGTCGTCCCCTTCCGCAGGTTAGCTGTACTTAA
ATCAACCGTCTAACCTCAGCTGAACTCATCTTCGACACCATGCGCCTAGG
TGACATCCCACGTGGCGAAATGTTTTGTATCTTGACTGTTTACTCCACGC
TGTCCTTGCGCTACATTAGTCGTGAAGGTGCCGCTAAGGAGACTCCTTAG
TGTCGAGGGCATCCTCGACCAACGGCACCGGTGTAATCAAGCAAGATTTC
TGGACGCGGACCACATGGATAGAAACATGTTCCTGACCAACTTATCCCGC
TAACATGCGCCGCAGAGAAGGCGGGGCTAGAAAGCAACCGCATACCCCCA
GACTCTCCCTTCCAGCTGTCTAAGTCATTTGACCGATCAGAGATAGAAAA
GACCCCGGCTGACAAGCATTTGAATCGATTCCAATCAAACTGTTCCTCCT
GCGCTGGACGTCACCGCATCCACTCGCGATCGACGACGTGAACAGGGGAG
AGGAACCCCGACAAAGCAGTCACCAAGGCGACCGCGTGCTTCTCACAGGC
AACCGATTTCAGTACTAGACACCCGCGAGGGAATGGTCCGACAAATTCTG
AGGCTCTCCCACCCCCGCCGCCAAGGAGCGAATTCTACTCGCGGGGACTC
GAGCAGAACCCCAACGTCAACGAAGACGATGGCGATGATGACGCCGGAGT
GCCGGGCGAGAGTTATCGCTAGGATAGCTGCAGGCCTGGGTATAATGTCG
GTGAAGGAGGCGGACGTGGCCATCCGAAAGCACGTGAGTGTCTTCGTCGG
TGAGCCACGTGTACAGTCGGACCCCCTCTTCCCCTGCACATTCGTTTCGT
CGTCTAGGCTCTCTCTGCCCATCCGCAAGCACTAGTGTCAGGATCGTCAT
GCTGGAGTATCAATCCAGTTAGGATGAGAATGGGAGAGAGTCCACAAATC
GCTTGCCGGCCAATGACCGCTTTGATCCCCCGTCTCCCCTCCTGTCCTTG
TGATGGTGTGATGGTGTGGTGGTGTGGTGGTGTGGTGGTGTGGTGGGTCA
ACCTGTCTCGGCTCAGATCTTGTTGGGTGGCGCGCGGAGTGGGCTGACTC
CAGGGCCAGCTGATGCGTCGTCGCCGCGGTTCCCGCAAGAGCATCATCAA
CAACAACAGCAGTACGAAGAAGAGGACGAAGGCAATTCTGATAACCTTTC
CTCCGAAGGAGAACACGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAC
GAGGGGGAGGAGAAGAAGAGGGAGAAGAAGAAGGTGTGGTAGGACCGGCA
CTCCATCGCTCGTGCTTAGCACGCCTTGACGGCGGCGGCTACGACGATCC
CGACCACGACCAAAACCGTGATCGTGATCACAGTCATGACCACGACCACG
ACCGCGACTATGACCATGAAAGCAAAGATATCGATACAAAAGTCGTGCGG
CATACGGGTCTGCGTGTGGATCAGCATCCGCATCCGCATCCGCATCCTCC
CGCTGGGCGGAGGCGAACAGCGGGGAGTTCAGAGGGGAACATTGCACATG
CTGTAACAGCGGATGTTTGGGGAACAAAACGCTCGCAAGGAAGAGCTAAC
TTGGCGGAGTGTGCCATCGACCGAATCATGCACGGCACGAGGCGATTGGC
CGGGCACCCATTGGTTAGTCGTCAGGTTTCAGAGGGCTTCATGTTGATAT
TTTCTTGTTCAGAGGGCTTGATGTTGATATTTTCTTGTGCTCAGGTTCTT
GTGCTCAGGTTTTTACTCCCTCCCCAAAAGTATTTATGTACCATGTCGCA
ACAAGACATCTATCATGAACATCTTTCCCAGGCAAATCTATGTTTATATC
GTCCAGTCGCGATGAGAATGTCTCCGGATCTGAACGAATTGCTGTTCAAG
TGTGGTCACCTTATCATCCAATAACACCAATCAATCCACGTATCGATCTG
TTGTACCTCCATTCCTGTATTTTTCATGACGTGACGTAATTACTTGCTAT
CGAGGCGCATAGACTTCTCGTCTCGTTTTGGGTCACAGCTGTGAAAACAG
TACCAAAGTGAAACACTGGATTTGCACAATGGTAGGGGTCAGAAGAACGG
GGAGCTCGTTCGAGGTTTTGGTTGTTTTTGCGTCTGAAGCATCACACGCA
ATAAATATCTTGGGATGCGATGTGTGCGGAATCCACCACGTTGCGATTAT
AGATGTTGACCGATGGTTAGTTTTTCAAGGTTTTAGAAGCCAAACTTTTG
TGCACGCCATCGATAAATGAGAGGCAAACGTGGCCTCTTCATCAACCGTA
GGCCCCGGCCATGCCCGAGTAATCCCCTGGAAATGCTTTTTTCGGCATGT
GAAAATTTCACAGGATGTGGCGAGGCTCGAGCTGAAGCTTTCTGAGTGCC
GTATGAAGATGGTACGAACGCAAGAAGATCAAAGGTAAGCGACGAGAGCA
AGAAGATTGATTTTAAACATTCGATCCCTGCGATAGCTGTGTATGTGGGT
GCAGTTAGTCCCTCGTTGAGGTCGCGGGAAGGCGGACGTGCTGCTGGTGC
GCATGAGTGGCCTACACAAAGAATTTTTTGGGAGAAGTGTTGCCGAAGTC
GTACGGTAATAGCAGCGTGCTTCGCTTCCCTTGTACCTTGCGTGCATGCA
TGGATGCGGCTGCATTCACCACCCGTCATCTCCCTTGCCGCAAACTTCGT
GCTTTTGCGCGTTCAACGATGGGCCCTGCAGGTTGCGAAGAAGGATACGG
CGGCGACGGCACCGGCAATGGCTCATAGTTCTATGCACCATCCTTCCGCT
CGTGACGCTTGTCGAAGAGCTTGCCAAGGAGAGGACGGCGAAAGCAGCAA
GCCACACGATCGAGGAGGAGACGACGGCAGGCACCTGAACTAGTGACTGT
AACAGACCCCAGCCCACGCGAATCGGTACATGTTTCGGTAATTCCGCACC
GGGTGTACCTGGATCGCCGCGGGAGAGGGAATCACCCTTGTCTGTGTGCA
CGAGATGATTTACCGTTGTATCTTTTGAGAACACCCAGGGGGGCGTGTCA
GGTTTTCGTTGACAGAGGATAACCCCGGGACGTTCTCGCAGGTCTCGTTT
TTGTTGAAAACGACCCCCCCGGGGCGAAAAGCCTCAGGGGCGTTGGTCTG
CTTATTTTGCCAAACACTCAGACGTTGACGTGCAGACCTCTCTCCTTTTG
GATCCCAAGAGGTCGGGCCTCAAGAGCATCTACGAGCAAGCTTTTAAGAA
GCAAAAGAAGGCTAGCGACTGGGAAATATTGCTCCCTTCACCGCCGCAGA
GAGGCGGGGCGGGGGATGGGGATGGCGCCCGCCTCCGGCACCAAGGAAGG
ACCGTCCCAACGAGACCAACGTACTTTCAATAAGGCTTATTAAATCGTGT
GGCTATGATGTTCTTCCTTCCTTTGTTTCGCTTTTTCGAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig126:9462..13002-

>mRNA_H-canaliculatus_F_contig126.2179.1 ID=mRNA_H-canaliculatus_F_contig126.2179.1|Name=mRNA_H-canaliculatus_F_contig126.2179.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=900bp|location=Sequence derived from alignment at H-canaliculatus_F_contig126:9462..13002- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTCCGACAAATTCTGAGGCTCTCCCACCCCCGCCGCCAAGGAGCGAA
TTCTACTCGCGGGGACTCGAGCAGAACCCCAACGTCAACGAAGACGATGG
CGATGATGACGCCGGAGTGCCGGGCGAGAGTTATCGCTAGGATAGCTGCA
GGCCTGGGTATAATGTCGGTGAAGGAGGCGGACGTGGCCATCCGAAAGCA
CATGGTCCGACAAATTCTGAGGCTCTCCCACCCCCGCCGCCAAGGAGCGA
ATTCTACTCGCGGGGACTCGAGCAGAACCCCAACGTCAACGAAGACGATG
GCGATGATGACGCCGGAGTGCCGGGCGAGAGTTATCGCTAGGATAGCTGC
AGGCCTGGGTATAATGTCGGTGAAGGAGGCGGACGTGGCCATCCGAAAGC
ACATCTTGTTGGGTGGCGCGCGGAGTGGGCTGACTCCAGGGCCAGCTGAT
GCGTCGTCGCCGCGGTTCCCGCAAGAGCATCATCAACAACAACAGCAGTA
CGAAGAAGAGGACGAAGGCAATTCTGATAACCTTTCCTCCGAAGGAGAAC
ACGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGAGGGGGAGGAGAA
GAAGAGGGAGAAGAAGAAGATCTTGTTGGGTGGCGCGCGGAGTGGGCTGA
CTCCAGGGCCAGCTGATGCGTCGTCGCCGCGGTTCCCGCAAGAGCATCAT
CAACAACAACAGCAGTACGAAGAAGAGGACGAAGGCAATTCTGATAACCT
TTCCTCCGAAGGAGAACACGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GACGAGGGGGAGGAGAAGAAGAGGGAGAAGAAGAAGGATGTGGCGAGGCT
CGAGCTGAAGCTTTCTGAGATGTGGCGAGGCTCGAGCTGAAGCTTTCTGA
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