mRNA_H-canaliculatus_F_contig12580.2166.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12580.2166.1
Unique NamemRNA_H-canaliculatus_F_contig12580.2166.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12580.2166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12580contigH-canaliculatus_F_contig12580:2648..3058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size413
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928972.6888096-CDS-H-canaliculatus_F_contig12580:2647..30581622928972.6888096-CDS-H-canaliculatus_F_contig12580:2647..3058Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12580 2648..3058 +
1696845635.761341-CDS-H-canaliculatus_F_contig12580:2647..30581696845635.761341-CDS-H-canaliculatus_F_contig12580:2647..3058Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12580 2648..3058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12580.2166.1prot_H-canaliculatus_F_contig12580.2166.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12580 2648..3058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12580.2166.1

>prot_H-canaliculatus_F_contig12580.2166.1 ID=prot_H-canaliculatus_F_contig12580.2166.1|Name=mRNA_H-canaliculatus_F_contig12580.2166.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=137bp
SCSTDFKGRKVRASVRRHIIGTALSTVSASPIAFPPFFAASTSAIGLSPS
SPRKPGPPPGRPPYPDSPCLLEPCCSRHRCRLQTQRDLPWGPCVLSPTIS
KPSARLVGVHASAAAAAAAAAVLGRGKQAPLIPVNKR
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mRNA from alignment at H-canaliculatus_F_contig12580:2648..3058+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12580.2166.1 ID=mRNA_H-canaliculatus_F_contig12580.2166.1|Name=mRNA_H-canaliculatus_F_contig12580.2166.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=411bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12580:2648..3058+ (Hapterophycus canaliculatus Oshoro5f female)
TCTTGCTCGACAGACTTCAAGGGTAGAAAGGTTCGAGCCTCCGTGCGGCG
ACATATCATTGGCACCGCTCTCTCGACTGTCTCAGCTTCTCCCATCGCAT
TCCCTCCTTTTTTTGCGGCTTCGACCTCCGCCATCGGACTCTCACCGTCC
TCTCCTCGAAAACCGGGGCCGCCACCCGGGCGCCCGCCTTACCCCGACTC
CCCTTGCCTCCTTGAGCCGTGCTGTAGTCGGCACCGCTGTCGGCTGCAGA
CTCAGCGAGATTTGCCGTGGGGGCCCTGTGTTCTTTCTCCGACCATCAGC
AAACCCTCAGCACGTCTTGTGGGTGTTCATGCATCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGTTCTAGGTCGGGGAAAACAGGCGCCCTTGATCCCTG
TCAACAAGCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12580:2648..3058+

>mRNA_H-canaliculatus_F_contig12580.2166.1 ID=mRNA_H-canaliculatus_F_contig12580.2166.1|Name=mRNA_H-canaliculatus_F_contig12580.2166.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=822bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12580:2648..3058+ (Hapterophycus canaliculatus Oshoro5f female)
TCTTGCTCGACAGACTTCAAGGGTAGAAAGGTTCGAGCCTCCGTGCGGCG
ACATATCATTGGCACCGCTCTCTCGACTGTCTCAGCTTCTCCCATCGCAT
TCCCTCCTTTTTTTGCGGCTTCGACCTCCGCCATCGGACTCTCACCGTCC
TCTCCTCGAAAACCGGGGCCGCCACCCGGGCGCCCGCCTTACCCCGACTC
CCCTTGCCTCCTTGAGCCGTGCTGTAGTCGGCACCGCTGTCGGCTGCAGA
CTCAGCGAGATTTGCCGTGGGGGCCCTGTGTTCTTTCTCCGACCATCAGC
AAACCCTCAGCACGTCTTGTGGGTGTTCATGCATCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGTTCTAGGTCGGGGAAAACAGGCGCCCTTGATCCCTG
TCAACAAGCGCTCTTGCTCGACAGACTTCAAGGGTAGAAAGGTTCGAGCC
TCCGTGCGGCGACATATCATTGGCACCGCTCTCTCGACTGTCTCAGCTTC
TCCCATCGCATTCCCTCCTTTTTTTGCGGCTTCGACCTCCGCCATCGGAC
TCTCACCGTCCTCTCCTCGAAAACCGGGGCCGCCACCCGGGCGCCCGCCT
TACCCCGACTCCCCTTGCCTCCTTGAGCCGTGCTGTAGTCGGCACCGCTG
TCGGCTGCAGACTCAGCGAGATTTGCCGTGGGGGCCCTGTGTTCTTTCTC
CGACCATCAGCAAACCCTCAGCACGTCTTGTGGGTGTTCATGCATCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGTTCTAGGTCGGGGAAAACAGGCGCC
CTTGATCCCTGTCAACAAGCGC
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