mRNA_H-canaliculatus_F_contig12564.2155.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12564.2155.1
Unique NamemRNA_H-canaliculatus_F_contig12564.2155.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12564.2155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12564contigH-canaliculatus_F_contig12564:2605..3512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size908
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12564.2155.1prot_H-canaliculatus_F_contig12564.2155.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12564 2739..3350 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.6020787-UTR-H-canaliculatus_F_contig12564:2604..27381622928971.6020787-UTR-H-canaliculatus_F_contig12564:2604..2738Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12564 2605..2738 +
1696845635.076305-UTR-H-canaliculatus_F_contig12564:2604..27381696845635.076305-UTR-H-canaliculatus_F_contig12564:2604..2738Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12564 2605..2738 +
1622928971.6438518-UTR-H-canaliculatus_F_contig12564:3350..35121622928971.6438518-UTR-H-canaliculatus_F_contig12564:3350..3512Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12564 3351..3512 +
1696845635.099085-UTR-H-canaliculatus_F_contig12564:3350..35121696845635.099085-UTR-H-canaliculatus_F_contig12564:3350..3512Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12564 3351..3512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.6199412-CDS-H-canaliculatus_F_contig12564:2738..33501622928971.6199412-CDS-H-canaliculatus_F_contig12564:2738..3350Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12564 2739..3350 +
1696845635.0891201-CDS-H-canaliculatus_F_contig12564:2738..33501696845635.0891201-CDS-H-canaliculatus_F_contig12564:2738..3350Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12564 2739..3350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12564.2155.1

>prot_H-canaliculatus_F_contig12564.2155.1 ID=prot_H-canaliculatus_F_contig12564.2155.1|Name=mRNA_H-canaliculatus_F_contig12564.2155.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=204bp
MASRFDLSFAPGNSHHDTTTGPNGWRTKHVVERGLQRSLIHHTSARRWER
CPKTREKCEARNSKLEGKGKGRSLKPHIEKSPLIVLLIEECIQHRSGCTG
PLLLQPLRCPLETRLRFWSIWRVQCERGRGFGTCEQPPDTLTSWKKQKSR
RVFSSQPSATQATRLALVAPRVGHKVGVESVSGYFAKLRLSPCEYFVASA
PCV*
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mRNA from alignment at H-canaliculatus_F_contig12564:2605..3512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12564.2155.1 ID=mRNA_H-canaliculatus_F_contig12564.2155.1|Name=mRNA_H-canaliculatus_F_contig12564.2155.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=908bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12564:2605..3512+ (Hapterophycus canaliculatus Oshoro5f female)
GCTGTGGACAAGTGATTCGTGCTTCGTCTGCTGGTTTTCGCTTTTTTTTT
GTTGGTGGACTTTTTCCGTAGTTTTTGTCCGCGTACGAGATGCGGCGACG
CTATCGTCGTTGTTTTTGACGTTTCGGCGCTGGCATGGCAAGTCGATTCG
ATCTCTCCTTTGCACCTGGGAATTCGCACCACGACACAACGACTGGTCCC
AACGGGTGGCGGACGAAACATGTCGTTGAACGAGGGTTACAGCGAAGCTT
GATACACCACACGAGTGCACGTCGATGGGAAAGATGCCCCAAAACGAGAG
AAAAGTGCGAAGCTAGAAATTCGAAGCTAGAAGGCAAAGGCAAAGGCAGG
AGCTTAAAGCCCCACATAGAGAAGAGCCCGCTGATCGTACTCCTAATCGA
AGAGTGCATCCAGCACAGAAGTGGCTGTACAGGCCCCCTCCTTCTTCAAC
CCCTGCGTTGCCCCCTTGAAACCAGATTGCGCTTTTGGTCGATTTGGCGA
GTCCAATGTGAAAGAGGCCGCGGTTTTGGTACGTGTGAGCAGCCCCCGGA
CACTCTGACTAGCTGGAAAAAACAGAAATCCCGCCGCGTGTTTTCTTCAC
AGCCAAGTGCCACACAAGCCACGCGTTTGGCACTTGTAGCCCCTCGGGTC
GGCCACAAAGTTGGGGTCGAGTCGGTCAGTGGCTATTTCGCTAAGTTGCG
CCTGAGCCCCTGCGAGTATTTTGTCGCAAGCGCCCCCTGCGTTTAGGCTT
TCCATCCGTGTGCATGGGCCCCTCTATTGCCTCGGCGTAGCCTCTGTACC
CACAACAAGAGCCTCTCGTGCCCTCCCCCCTACCCTTGCCCTCGGATCAA
CTTGGAGTCGAAGGTTGGGGGCTCATCATCGCATCGACAGCCCCGTTCAA
GACCCCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12564:2605..3512+

>mRNA_H-canaliculatus_F_contig12564.2155.1 ID=mRNA_H-canaliculatus_F_contig12564.2155.1|Name=mRNA_H-canaliculatus_F_contig12564.2155.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1224bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12564:2605..3512+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCAAGTCGATTCGATCTCTCCTTTGCACCTGGGAATTCGCACCACGA
CACAACGACTGGTCCCAACGGGTGGCGGACGAAACATGTCGTTGAACGAG
GGTTACAGCGAAGCTTGATACACCACACGAGTGCACGTCGATGGGAAAGA
TGCCCCAAAACGAGAGAAAAGTGCGAAGCTAGAAATTCGAAGCTAGAAGG
CAAAGGCAAAGGCAGGAGCTTAAAGCCCCACATAGAGAAGAGCCCGCTGA
TCGTACTCCTAATCGAAGAGTGCATCCAGCACAGAAGTGGCTGTACAGGC
CCCCTCCTTCTTCAACCCCTGCGTTGCCCCCTTGAAACCAGATTGCGCTT
TTGGTCGATTTGGCGAGTCCAATGTGAAAGAGGCCGCGGTTTTGGTACGT
GTGAGCAGCCCCCGGACACTCTGACTAGCTGGAAAAAACAGAAATCCCGC
CGCGTGTTTTCTTCACAGCCAAGTGCCACACAAGCCACGCGTTTGGCACT
TGTAGCCCCTCGGGTCGGCCACAAAGTTGGGGTCGAGTCGGTCAGTGGCT
ATTTCGCTAAGTTGCGCCTGAGCCCCTGCGAGTATTTTGTCGCAAGCGCC
CCCTGCGTTTAGATGGCAAGTCGATTCGATCTCTCCTTTGCACCTGGGAA
TTCGCACCACGACACAACGACTGGTCCCAACGGGTGGCGGACGAAACATG
TCGTTGAACGAGGGTTACAGCGAAGCTTGATACACCACACGAGTGCACGT
CGATGGGAAAGATGCCCCAAAACGAGAGAAAAGTGCGAAGCTAGAAATTC
GAAGCTAGAAGGCAAAGGCAAAGGCAGGAGCTTAAAGCCCCACATAGAGA
AGAGCCCGCTGATCGTACTCCTAATCGAAGAGTGCATCCAGCACAGAAGT
GGCTGTACAGGCCCCCTCCTTCTTCAACCCCTGCGTTGCCCCCTTGAAAC
CAGATTGCGCTTTTGGTCGATTTGGCGAGTCCAATGTGAAAGAGGCCGCG
GTTTTGGTACGTGTGAGCAGCCCCCGGACACTCTGACTAGCTGGAAAAAA
CAGAAATCCCGCCGCGTGTTTTCTTCACAGCCAAGTGCCACACAAGCCAC
GCGTTTGGCACTTGTAGCCCCTCGGGTCGGCCACAAAGTTGGGGTCGAGT
CGGTCAGTGGCTATTTCGCTAAGTTGCGCCTGAGCCCCTGCGAGTATTTT
GTCGCAAGCGCCCCCTGCGTTTAG
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