mRNA_H-canaliculatus_F_contig12556.2151.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12556.2151.1
Unique NamemRNA_H-canaliculatus_F_contig12556.2151.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12556.2151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12556contigH-canaliculatus_F_contig12556:1304..1732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12556.2151.1prot_H-canaliculatus_F_contig12556.2151.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12556 1357..1704 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.0291877-UTR-H-canaliculatus_F_contig12556:1303..13561622928971.0291877-UTR-H-canaliculatus_F_contig12556:1303..1356Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12556 1304..1356 +
1696845634.7916744-UTR-H-canaliculatus_F_contig12556:1303..13561696845634.7916744-UTR-H-canaliculatus_F_contig12556:1303..1356Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12556 1304..1356 +
1622928971.054358-UTR-H-canaliculatus_F_contig12556:1704..17321622928971.054358-UTR-H-canaliculatus_F_contig12556:1704..1732Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12556 1705..1732 +
1696845634.8179936-UTR-H-canaliculatus_F_contig12556:1704..17321696845634.8179936-UTR-H-canaliculatus_F_contig12556:1704..1732Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12556 1705..1732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.0433092-CDS-H-canaliculatus_F_contig12556:1356..17041622928971.0433092-CDS-H-canaliculatus_F_contig12556:1356..1704Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12556 1357..1704 +
1696845634.8015823-CDS-H-canaliculatus_F_contig12556:1356..17041696845634.8015823-CDS-H-canaliculatus_F_contig12556:1356..1704Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12556 1357..1704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12556.2151.1

>prot_H-canaliculatus_F_contig12556.2151.1 ID=prot_H-canaliculatus_F_contig12556.2151.1|Name=mRNA_H-canaliculatus_F_contig12556.2151.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
MNKISLSRRCYWKSLLPIDEKRLAFSTQRKINRPSPPLPIHPAQRIDKNI
PLLQRHTPRHRREKGRTDRRRRQEKLQHTKMSALALQSCLGRSRRQLNRT
AFIIHYRKKTARGAG*
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mRNA from alignment at H-canaliculatus_F_contig12556:1304..1732+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12556.2151.1 ID=mRNA_H-canaliculatus_F_contig12556.2151.1|Name=mRNA_H-canaliculatus_F_contig12556.2151.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=429bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12556:1304..1732+ (Hapterophycus canaliculatus Oshoro5f female)
CTCACCCTCCGAGCTCGTCTACTCAAAGCCCGAACACCAAAAAGTAGCAC
GTGATGAACAAGATTTCCCTCTCAAGACGCTGCTACTGGAAATCCCTGCT
GCCAATAGACGAAAAACGCCTTGCCTTTTCTACCCAACGCAAGATAAACC
GACCTTCTCCGCCTCTTCCGATCCACCCCGCGCAACGCATAGATAAGAAC
ATACCGCTACTTCAGCGGCACACACCACGACATCGGCGTGAGAAAGGGCG
CACGGATCGCCGACGTAGGCAAGAAAAGCTCCAGCACACAAAAATGAGTG
CACTCGCTCTGCAAAGCTGCCTTGGCCGAAGCAGACGACAGCTAAACAGG
ACAGCATTCATCATCCACTACAGAAAAAAGACTGCTAGGGGGGCGGGGTA
ACAGGTGCCTTGTTTTCTTGTTTTATGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12556:1304..1732+

>mRNA_H-canaliculatus_F_contig12556.2151.1 ID=mRNA_H-canaliculatus_F_contig12556.2151.1|Name=mRNA_H-canaliculatus_F_contig12556.2151.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12556:1304..1732+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAACAAGATTTCCCTCTCAAGACGCTGCTACTGGAAATCCCTGCTGCC
AATAGACGAAAAACGCCTTGCCTTTTCTACCCAACGCAAGATAAACCGAC
CTTCTCCGCCTCTTCCGATCCACCCCGCGCAACGCATAGATAAGAACATA
CCGCTACTTCAGCGGCACACACCACGACATCGGCGTGAGAAAGGGCGCAC
GGATCGCCGACGTAGGCAAGAAAAGCTCCAGCACACAAAAATGAGTGCAC
TCGCTCTGCAAAGCTGCCTTGGCCGAAGCAGACGACAGCTAAACAGGACA
GCATTCATCATCCACTACAGAAAAAAGACTGCTAGGGGGGCGGGGTAAAT
GAACAAGATTTCCCTCTCAAGACGCTGCTACTGGAAATCCCTGCTGCCAA
TAGACGAAAAACGCCTTGCCTTTTCTACCCAACGCAAGATAAACCGACCT
TCTCCGCCTCTTCCGATCCACCCCGCGCAACGCATAGATAAGAACATACC
GCTACTTCAGCGGCACACACCACGACATCGGCGTGAGAAAGGGCGCACGG
ATCGCCGACGTAGGCAAGAAAAGCTCCAGCACACAAAAATGAGTGCACTC
GCTCTGCAAAGCTGCCTTGGCCGAAGCAGACGACAGCTAAACAGGACAGC
ATTCATCATCCACTACAGAAAAAAGACTGCTAGGGGGGCGGGGTAA
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