mRNA_H-canaliculatus_F_contig12539.2143.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12539.2143.1
Unique NamemRNA_H-canaliculatus_F_contig12539.2143.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12539.2143.1 vs. uniprot
Match: D7G759_ECTSI (Weakly similar Glutamic acid-rich protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G759_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.100e-15
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:    1 ALDWVLTAADEGSLFDGVDPSVVAQYLGDFTTNYADSHNEVTAFLVNAEELLDMYGVEVPDLSLPPAHNFD 213
            +LDWVL  A++G LFDG D ++V + L DF   Y   +++V  FL++AEELL +YG+ VPDLSLP AH FD
Sbjct:  467 SLDWVLEEAEDGDLFDGADSAMVEECLNDFKGFYMTRYDDVLTFLLDAEELLGIYGLHVPDLSLPAAHGFD 537
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12539.2143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G759_ECTSI2.100e-1553.52Weakly similar Glutamic acid-rich protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12539contigH-canaliculatus_F_contig12539:1680..2824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size522
Cds size219
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12539.2143.1prot_H-canaliculatus_F_contig12539.2143.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12539 1981..2824 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928969.708975-UTR-H-canaliculatus_F_contig12539:1679..19801622928969.708975-UTR-H-canaliculatus_F_contig12539:1679..1980Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12539 1680..1980 -
1696845634.2220702-UTR-H-canaliculatus_F_contig12539:1679..19801696845634.2220702-UTR-H-canaliculatus_F_contig12539:1679..1980Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12539 1680..1980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928969.7278075-CDS-H-canaliculatus_F_contig12539:1980..20891622928969.7278075-CDS-H-canaliculatus_F_contig12539:1980..2089Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12539 1981..2089 -
1696845634.2324708-CDS-H-canaliculatus_F_contig12539:1980..20891696845634.2324708-CDS-H-canaliculatus_F_contig12539:1980..2089Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12539 1981..2089 -
1622928969.7439418-CDS-H-canaliculatus_F_contig12539:2714..28241622928969.7439418-CDS-H-canaliculatus_F_contig12539:2714..2824Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12539 2715..2824 -
1696845634.2490604-CDS-H-canaliculatus_F_contig12539:2714..28241696845634.2490604-CDS-H-canaliculatus_F_contig12539:2714..2824Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12539 2715..2824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12539.2143.1

>prot_H-canaliculatus_F_contig12539.2143.1 ID=prot_H-canaliculatus_F_contig12539.2143.1|Name=mRNA_H-canaliculatus_F_contig12539.2143.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=73bp
ALDWVLTAADEGSLFDGVDPSVVAQYLGDFTTNYADSHNEVTAFLVNAEE
LLDMYGVEVPDLSLPPAHNFDA*
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mRNA from alignment at H-canaliculatus_F_contig12539:1680..2824-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12539.2143.1 ID=mRNA_H-canaliculatus_F_contig12539.2143.1|Name=mRNA_H-canaliculatus_F_contig12539.2143.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1145bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12539:1680..2824- (Hapterophycus canaliculatus Oshoro5f female)
GCTCTGGACTGGGTCCTGACGGCAGCAGACGAAGGCAGCCTTTTCGACGG
CGTCGACCCTTCGGTCGTCGCGCAGTACCTGGGCGACTTCACGACCAACT
ATGCGGACAGGTGCGTGGTTCATCTCTGTGTTTCGTTCTTGCATGGGTAC
GGCGCTTGGTGGGGGGAAGATCCGCGAAGAAATATCACTTGGCGGGTGTG
ATCGGTGTGCATCTAGAAGCACTATGTAACTTGATAATGTTTTGTAATTT
GGCAGGGAGATTGTACTCGTGGCATGTCTTTGTCGGCAGCCGGGGTGGGC
ACTTGAGGCGTCTCAAGCCGCGCTCGGGGCAAAGAGGCTCTCCATGACTA
CCAATGGCCCTGACTTATGTAGGCCATTTATTTGCGTGGCCCGGGGACGC
TAGCTTAGGTGTTGGGCGATTTCGAGAAAGCCGTGGTGCGTTTTCGCGTC
CGCAAGTGTACGATAGCCCTGTAGTAGATGGTTGAAGTTGAAACTTTGAT
TAGTTTCATTCGAATCGTCTCGTCTCTGTAGCAGCCATGGTACAGTAGCT
CAACTGAGGCAGGCAGGCAGGTGCCGCGTCAAGGAAGGCTTTCTCCGCCC
CGCGACAACACCCCTACTTGTAACAAATGTGCTCCTGCGTAAGCGTAACG
TGTAAAGTCTCCTGGTAGAAAACCTTCGACCCGAATCGTCCTAACTCCCC
TCCCCTCTATCGACCTGCTGGTCCGTCCGAACCAGCCACAACGAGGTGAC
GGCTTTCCTCGTGAACGCGGAAGAGCTGCTGGACATGTACGGCGTGGAAG
TCCCAGACTTGAGCTTGCCGCCCGCACACAACTTCGACGCGTGAGTCCGC
CCGTCCGGACAGCAGAAGCTCGTCCGAGTTCTGTGGTGGGAGCACCTTGC
TCGAAACCGTTGCGGCTGCGGGAGGGCGGGTGACGGAACACGCGTGTGTC
TGTTGTCAGGGTATCCACCCCGAGCGTCTTTTTTGGTGTTCAGTAGTAAA
GATATACCTCTTTTTGCGGGGGCAGGGGTCCTGTTTGTTCGCTGTCACCT
CTGAGCATGTTTCGCCAGCGTGTCCGAGCCGAGCGGTTGCCGCAGTCTCT
GCTGAACCTTTCTTTCGGGACATCTACCCCCCCCCCGTTGTCTCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12539:1680..2824-

>mRNA_H-canaliculatus_F_contig12539.2143.1 ID=mRNA_H-canaliculatus_F_contig12539.2143.1|Name=mRNA_H-canaliculatus_F_contig12539.2143.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=438bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12539:1680..2824- (Hapterophycus canaliculatus Oshoro5f female)
GCTCTGGACTGGGTCCTGACGGCAGCAGACGAAGGCAGCCTTTTCGACGG
CGTCGACCCTTCGGTCGTCGCGCAGTACCTGGGCGACTTCACGACCAACT
ATGCGGACAGGCTCTGGACTGGGTCCTGACGGCAGCAGACGAAGGCAGCC
TTTTCGACGGCGTCGACCCTTCGGTCGTCGCGCAGTACCTGGGCGACTTC
ACGACCAACTATGCGGACAGCCACAACGAGGTGACGGCTTTCCTCGTGAA
CGCGGAAGAGCTGCTGGACATGTACGGCGTGGAAGTCCCAGACTTGAGCT
TGCCGCCCGCACACAACTTCGACGCGTGACCACAACGAGGTGACGGCTTT
CCTCGTGAACGCGGAAGAGCTGCTGGACATGTACGGCGTGGAAGTCCCAG
ACTTGAGCTTGCCGCCCGCACACAACTTCGACGCGTGA
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