mRNA_H-canaliculatus_F_contig12538.2142.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12538.2142.1
Unique NamemRNA_H-canaliculatus_F_contig12538.2142.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12538.2142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12538contigH-canaliculatus_F_contig12538:502..2447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size503
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12538.2142.1prot_H-canaliculatus_F_contig12538.2142.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12538 506..2206 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928969.5927103-UTR-H-canaliculatus_F_contig12538:501..5051622928969.5927103-UTR-H-canaliculatus_F_contig12538:501..505Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12538 502..505 -
1696845634.1765049-UTR-H-canaliculatus_F_contig12538:501..5051696845634.1765049-UTR-H-canaliculatus_F_contig12538:501..505Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12538 502..505 -
1622928969.6489632-UTR-H-canaliculatus_F_contig12538:2206..24471622928969.6489632-UTR-H-canaliculatus_F_contig12538:2206..2447Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12538 2207..2447 -
1696845634.2081602-UTR-H-canaliculatus_F_contig12538:2206..24471696845634.2081602-UTR-H-canaliculatus_F_contig12538:2206..2447Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12538 2207..2447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928969.6141353-CDS-H-canaliculatus_F_contig12538:505..5671622928969.6141353-CDS-H-canaliculatus_F_contig12538:505..567Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12538 506..567 -
1696845634.184938-CDS-H-canaliculatus_F_contig12538:505..5671696845634.184938-CDS-H-canaliculatus_F_contig12538:505..567Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12538 506..567 -
1622928969.625831-CDS-H-canaliculatus_F_contig12538:2010..22061622928969.625831-CDS-H-canaliculatus_F_contig12538:2010..2206Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12538 2011..2206 -
1696845634.1930313-CDS-H-canaliculatus_F_contig12538:2010..22061696845634.1930313-CDS-H-canaliculatus_F_contig12538:2010..2206Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12538 2011..2206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12538.2142.1

>prot_H-canaliculatus_F_contig12538.2142.1 ID=prot_H-canaliculatus_F_contig12538.2142.1|Name=mRNA_H-canaliculatus_F_contig12538.2142.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=86bp
MVWKPDGGSRRKRGLNSLVFLKAKASGICSCGRGVLSRVAQLKLCPCTPH
ATRAWRTDRRRAPNPEMCEREVQGCGRPAKATAAK*
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mRNA from alignment at H-canaliculatus_F_contig12538:502..2447-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12538.2142.1 ID=mRNA_H-canaliculatus_F_contig12538.2142.1|Name=mRNA_H-canaliculatus_F_contig12538.2142.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1946bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12538:502..2447- (Hapterophycus canaliculatus Oshoro5f female)
GGGACGACGACTCACGAGTGGCCTCAAGAGTGTCTACAACATGGTGAACC
ATGAGAAAAGCTGGTGGACTACACCAGGGGTCTGCATCTGCTCAGTGATC
CTGTTGATTCCATCTCAGCGATAGCTGGTGGCTAAATCACCTAACCCAAG
GAGAGCAGCAACCAAGCAAGTAGCACCTCAGAGACCAGGATGCTTGCGAA
GAGGGGGAGGGCGGGGGCGCAAAAAGAGCTGGGCACGTTCGATGGTTTGG
AAACCAGACGGTGGTAGCAGAAGGAAAAGGGGCCTAAATAGTCTTGTGTT
CCTTAAGGCAAAAGCATCAGGAATTTGTTCATGTGGGAGAGGCGTCCTCT
CGCGCGTGGCACAGCTAAAGCTGTGTCCCTGCACACCGCACGCTACACGG
GCATGGCGCACTGATCGGCGGCGGGCACCCAACCCTGGTGAGCGTGTGAT
CCTGGGTGCTTTGAAGTTGTTCAGGTGCTGTCTAATCTTCAACCCTCATT
GCTGAAGCCAAGTCCGGGGAGGGAGGATTTAGAAAGCGATTGCCGTTTCC
TACTGCATAATAAATACATGTTCTGACACGCCACAGAATCGCAGATTTAT
CCTACTGTTAGGTATGACTCGAGTCCGCTCGGCTCATAACCCTACAACAT
CTAGTATCTGGCAAAGCTGGTACCCAAATCATACGTATATTACATGCGAA
ACCCCCAAACTCCCCGTTCCATTTGTTCGGTGAAATCTATGCCCGTAATA
ATCTGGCAATGCTGTGAGCATGTCCAACAGCCCCCCTGCACGCGATATCG
ACACGATCTAATCCGAGCTGACTAATACAATACATGCAAACTCCTTTCTC
CAAAAAAACGCATACAGATTTAAAATCCAAGAAAGAAATCATGTGCCTTT
ACGAGAACACTTTACTCCAAATCTCATTCATTTCCGGGAAATCACCAGAA
GAACCACTAAACCAAAGACACTGTCGTTAGTATTTTTATCCGTCAATCTT
CGAAGTAATTCTTCCAACAACATGCCCATGAAAATATCACACCGAAAAGC
AAGCACGATAACCAGAAACCAAATATACTCAGAGAAACATAGAACATAAA
AAATGAGAAATTATCTGAGAAAATCATTTCAAATCCATCACAATATTCCG
ATGAAACACAAACTCTCTCTCAGGTAGCGACATGGTGAGGAAATCAGCAT
GCTGGTACTGCGTCGCCACGTGGATTACTTCAATTTCAGTCCTTCCTACC
AACTCCCTCAGAAAGTGGTGCCTCACATCGATGTGCTTCGAGTTGGACTT
GGAAATCGGATGTTTTGCGATCCGAATGGCACCCTCATTGTCCTCAAACA
TCGGAATACACGGCATCCCCTCATCCGGCAAGATAAAAGACAAATCTTCC
TTCCCAAGATCCGAACGACCAACGTATTCAGCTTGCGTCGTGGAAAGTGT
CACACATTTCTGAGTCTTAAAGCATCAACAAAGAGGCCCCCCAGCACACA
TCACTTCTGCCCCGGAAACCGACCCGCAGTCCGTCGCCCTGCTGGCGTAG
CCGGCATCCGCAAATGCAATCAGAGTAAGTCCGGCTACAGTTCCCTTCTC
AGCGAAAATCCCGAAATGATTCCAACTCACGAAGAGCGATGTCGATTTCC
TCAGGCGTGGCCATGAGCGGAACCAATCCAAACGAGATCCCCCGCTCCAC
CGAACCAAGCGACCACCCCCCCCGGAGCACCGCTCTACCAAGCGGGTCCG
GCTGCGGCCGATTGCTCTCCTCCATGCCCCTTTGCCCTGCACGCTCCACT
CCCCCGCTCCCGGGCTTTCCGCTCCCGAGTTCCTCCCGCACTTCGCTCAT
CCGCGCTCCTGTCCCCGTGCGCGTGGCCAGAAATGTGTGAGAGAGAAGTC
CAAGGCTGTGGTCGTCCCGCGAAAGCGACGGCAGCGAAGTAGACGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12538:502..2447-

>mRNA_H-canaliculatus_F_contig12538.2142.1 ID=mRNA_H-canaliculatus_F_contig12538.2142.1|Name=mRNA_H-canaliculatus_F_contig12538.2142.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=516bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12538:502..2447- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTTGGAAACCAGACGGTGGTAGCAGAAGGAAAAGGGGCCTAAATAG
TCTTGTGTTCCTTAAGGCAAAAGCATCAGGAATTTGTTCATGTGGGAGAG
GCGTCCTCTCGCGCGTGGCACAGCTAAAGCTGTGTCCCTGCACACCGCAC
GCTACACGGGCATGGCGCACTGATCGGCGGCGGGCACCCAACCCTGATGG
TTTGGAAACCAGACGGTGGTAGCAGAAGGAAAAGGGGCCTAAATAGTCTT
GTGTTCCTTAAGGCAAAAGCATCAGGAATTTGTTCATGTGGGAGAGGCGT
CCTCTCGCGCGTGGCACAGCTAAAGCTGTGTCCCTGCACACCGCACGCTA
CACGGGCATGGCGCACTGATCGGCGGCGGGCACCCAACCCTGAAATGTGT
GAGAGAGAAGTCCAAGGCTGTGGTCGTCCCGCGAAAGCGACGGCAGCGAA
GTAGAAATGTGTGAGAGAGAAGTCCAAGGCTGTGGTCGTCCCGCGAAAGC
GACGGCAGCGAAGTAG
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