mRNA_H-canaliculatus_F_contig12534.2141.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12534.2141.1
Unique NamemRNA_H-canaliculatus_F_contig12534.2141.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12534.2141.1 vs. uniprot
Match: A0A6H5L5K3_9PHAE (TLC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5K3_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 7.310e-73
Identity = 107/134 (79.85%), Postives = 115/134 (85.82%), Query Frame = 1
Query:    4 DPSRPPTAGCLQGHHVATLSVLVDPLLHQQHAFYTACALLVEFNTFLLILRRRVSWGNYLEVPFALSWVALRLVWYPFLGFYFAMCAFPEALTPVYPERLVAWRVAVEEERPVAMYLGSYLAWVGICVFQGWWS 405
            +PS   +   + GHHVATLSVLVDPLL  QHAFYTACALLVEFNTFLLILRRRVSWG  LEVPFALSWVALRL+WYPFLGFYF MC FPE L  +YPERLV WR AVEE+RPV M+LGSYLAWVGIC+FQGWWS
Sbjct:  116 NPSGVKSPRTVLGHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIWYPFLGFYFTMCTFPETLKALYPERLVQWRFAVEEDRPVPMFLGSYLAWVGICIFQGWWS 249          
BLAST of mRNA_H-canaliculatus_F_contig12534.2141.1 vs. uniprot
Match: A0A835Z8V7_9STRA (TLC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V7_9STRA)

HSP 1 Score: 155 bits (392), Expect = 8.250e-44
Identity = 76/124 (61.29%), Postives = 89/124 (71.77%), Query Frame = 1
Query:   40 GHHVATLSVLVDPLLHQQHAFYTACALLVEFNTFLLILRRRVSWGN--YLEVPFALSWVALRLVWYPFLGFYFAMCAFPEALTPVYPERLVAWRVAVEEERPVAMYLGSYLAWVGICVFQGWWS 405
            GHH ATL+VL+DP +H QHA YT  ALLVE NTFLLI RRR  WG    +E PF  SWVALRL+WYPFL F++ +CAFP  L  VYP  +V WR+ +E +  V +Y  SY AWVGICVFQ WWS
Sbjct:  125 GHHAATLAVLIDPYMHPQHALYTCWALLVEANTFLLIARRRFRWGASALVEAPFVASWVALRLIWYPFLAFFWGLCAFP-GLADVYPAAIVRWRLRIEVDL-VRLYPASYAAWVGICVFQLWWS 246          
BLAST of mRNA_H-canaliculatus_F_contig12534.2141.1 vs. uniprot
Match: A0A7S4PA72_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PA72_GUITH)

HSP 1 Score: 127 bits (319), Expect = 1.700e-33
Identity = 64/138 (46.38%), Postives = 84/138 (60.87%), Query Frame = 1
Query:    1 SDPSRPPTAGCLQGHHVATLSVLVDPLLHQQHAFYTACALLVEFNTFLLILRRRVSWGNYLEVPFALSWVALRLVWYPFLGFYFAMCAFPEALTPVYPERL---VAWRVAVEEERPVAMYLGSYLAWVGICVFQGWWS 405
            S P    + G +  HH+ATL VL+DPLL  +H  YT+  LLVE NT LL+LRRRVS+   +EVPF L+WV LR +WYP L FYF +C  P    P+ P  L   +  R  +E   PV M   S L+W  +C+FQ +W+
Sbjct:  118 SQPKIVKSPGMVGSHHIATLLVLLDPLLQPKHRVYTSACLLVEINTLLLLLRRRVSYSAIVEVPFILTWVLLRNIWYPLLMFYFFLCFSPSTFIPLLPSSLSWVIEMRTKIELRNPVPMMGVSLLSWAMVCIFQFYWT 255          
BLAST of mRNA_H-canaliculatus_F_contig12534.2141.1 vs. uniprot
Match: A0A7S0VYL2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VYL2_9CRYP)

HSP 1 Score: 121 bits (304), Expect = 2.230e-31
Identity = 59/126 (46.83%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   28 GCLQGHHVATLSVLVDPLLHQQHAFYTACALLVEFNTFLLILRRRVSWGNYLEVPFALSWVALRLVWYPFLGFYFAMCAFPEALTPVYPERLVAWRVAVEEERPVAMYLGSYLAWVGICVFQGWWS 405
            G +  HH ATL VL+DPLL   H+ YT+  LLVE NT LL+LRR++S+   +EVPF +SWV LR VWYP L F+F +C+ P  L P++P  +V  R  +E    V M   S ++W  +CV Q  W+
Sbjct:  110 GVVIAHHAATLLVLLDPLLSPSHSVYTSACLLVEINTLLLLLRRKMSYSVLVEVPFIISWVLLRNVWYPLLMFFFILCSAPGTLGPLFPRAMVEARRRIEGPEAVPMRFVSMVSWTAVCVLQLKWT 235          
BLAST of mRNA_H-canaliculatus_F_contig12534.2141.1 vs. uniprot
Match: A0A7S2V1S4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1S4_9STRA)

HSP 1 Score: 112 bits (279), Expect = 8.860e-28
Identity = 57/136 (41.91%), Postives = 87/136 (63.97%), Query Frame = 1
Query:   13 RPPTAGCLQGHHVATLSVLVDPLLHQ-----QHAFYTACALLVEFNTFLLILRRRVSWGNYLEVPFALSWVALRLVWYPFLGFYFAMCAFPEALTPVYPERLVAWRVAVEEERPVAMYLGSYLAWVGICVFQGWWS 405
            + P   CL  HH++TL++L+ P+ +         +YTA A++VE NT LL +RR+  +G ++E+PFALSWV +RLVWYP LGFYF +CAF      + P+ ++  R  +E   P  ++  S +A+V IC+FQ +WS
Sbjct:  102 KSPVTVCL--HHISTLAILLGPIFNAISGSGLQGYYTAAAIIVEANTVLLTMRRKFKFGLWVEIPFALSWVLIRLVWYPILGFYFMVCAFHSVRELLAPQFILHIRETIEGPEPEPLWKLSAMAFVLICMFQIFWS 235          
BLAST of mRNA_H-canaliculatus_F_contig12534.2141.1 vs. uniprot
Match: A0A7S2B6S7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6S7_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.090e-16
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   43 HHVATLSVLVDPLLHQQHAFYTACALLVEFNTFLLILRRRVSWGNYLEVPFALSWVALRLVWYPFLGFYFAMCAFPE 273
            HH+ TL+VL DP+    H  Y +CALLVE NT L+ LRRR+    + EV F  +W+ALRL+W+P L ++F   +FPE
Sbjct:   75 HHLGTLAVLYDPITVLNHQKYASCALLVEVNTVLITLRRRLGRPMWCEVSFLATWLALRLIWFPCLSYWFLCSSFPE 151          
BLAST of mRNA_H-canaliculatus_F_contig12534.2141.1 vs. uniprot
Match: A0A7S0E8D6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E8D6_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 9.470e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    1 SDPSRPPTAGCLQGHHVATLSVLVDPLLHQQHAFYTACALLVEFNTFLLILRRRVSWGNYLEVPFALSWVALRLVWYPFLGFYFAMCAFPE 273
            + PS       L  HH   + + +  ++H  H  Y A   +VE NTF L+LRR +    ++EV FALSWV +R+ W+P+L  +F +C  PE
Sbjct:    1 AQPSVVKAPAVLLWHHAVAIGLTLHTVVHPPHRRYVAWMSVVELNTFFLVLRRHLR-RRWVEVCFALSWVLIRVCWFPYLPLHF-LCFVPE 89          
BLAST of mRNA_H-canaliculatus_F_contig12534.2141.1 vs. uniprot
Match: A0A7S0JGF7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JGF7_9EUKA)

HSP 1 Score: 65.5 bits (158), Expect = 1.880e-10
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   43 HHVATLSVLVDPLLHQQHAFYTACALLVEFNTFLLILRRRVSWGNYLEVPFALSWVALRLVWYPFL 240
            HH  T  +L+ P+LH +HA +TA   LVE NT L+    +V  G +L V F  SWV LRLVWYP+L
Sbjct:   74 HHTLTALLLLHPILHAEHAHFTALGTLVELNT-LVHNANKVFGGGFLAVSFYASWVGLRLVWYPWL 138          
BLAST of mRNA_H-canaliculatus_F_contig12534.2141.1 vs. uniprot
Match: A0A813G2R2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G2R2_POLGL)

HSP 1 Score: 63.5 bits (153), Expect = 1.830e-9
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1
Query:    4 DPSRPPTAGCLQGHHVATLSVLVDPLLHQQHAFYTACALLVEFNTFLLILRRRVSWGNYLEVPFALSWVALRLVWYPFLG 243
            +PS   T   +  HH  TL V++D +    H    + AL+VE NT LL LRR +    + E+ F L+WV +RLVW+P LG
Sbjct:   87 NPSMVKTPKAILAHHAVTLIVIMDTIESASHRANASHALIVEINTVLLTLRRILGRPLWCEIGFYLTWVGIRLVWFPALG 166          
BLAST of mRNA_H-canaliculatus_F_contig12534.2141.1 vs. uniprot
Match: A0A7S0ASE2_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0ASE2_9DINO)

HSP 1 Score: 62.0 bits (149), Expect = 9.230e-9
Identity = 46/132 (34.85%), Postives = 65/132 (49.24%), Query Frame = 1
Query:   22 TAGCLQGHHVATLSVLVDPLLHQQHAFYTACALLVEFNTFLLILRRRVSWGNYLEVPFALSWVALRLVWYPFLGFYFAMCA----FPEALTPVYPERLVAWRVAVEEERPVAMYLGSYLAWVGICVFQGWWS 405
            T G +  HHV TL V+   + +  H    + ALLVE NT LL LRRR+    + E  F  +W  LRLVW+P L    AM A    F + L    P  L+   V V    P+  Y  + +++  + V Q +W+
Sbjct:   83 TPGSIVAHHVVTLVVIYGTVENVTHRVNASRALLVEINTVLLTLRRRLGRPVWCEAAFYATWGLLRLVWFPILSV--AMLASTFGFADQLRASMPACLL---VDVRSPPPIKAY--ASISFAAVVVLQYYWT 207          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12534.2141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5L5K3_9PHAE7.310e-7379.85TLC domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z8V7_9STRA8.250e-4461.29TLC domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S4PA72_GUITH1.700e-3346.38Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
A0A7S0VYL2_9CRYP2.230e-3146.83Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S2V1S4_9STRA8.860e-2841.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2B6S7_9STRA1.090e-1649.35Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0E8D6_9EUKA9.470e-1137.36Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7S0JGF7_9EUKA1.880e-1050.00Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A813G2R2_POLGL1.830e-941.25Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S0ASE2_9DINO9.230e-934.85Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12534contigH-canaliculatus_F_contig12534:559..1693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.0
Seed ortholog evalue2.6e-57
Seed eggNOG ortholog2880.D8LSQ8
EggNOG OGs2E7M6@1,2SE6N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928969.5195682-CDS-H-canaliculatus_F_contig12534:558..7851622928969.5195682-CDS-H-canaliculatus_F_contig12534:558..785Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12534 559..785 +
1696845634.1554368-CDS-H-canaliculatus_F_contig12534:558..7851696845634.1554368-CDS-H-canaliculatus_F_contig12534:558..785Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12534 559..785 +
1622928969.5416377-CDS-H-canaliculatus_F_contig12534:1515..16931622928969.5416377-CDS-H-canaliculatus_F_contig12534:1515..1693Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12534 1516..1693 +
1696845634.166837-CDS-H-canaliculatus_F_contig12534:1515..16931696845634.166837-CDS-H-canaliculatus_F_contig12534:1515..1693Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12534 1516..1693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12534.2141.1prot_H-canaliculatus_F_contig12534.2141.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12534 559..1693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12534.2141.1

>prot_H-canaliculatus_F_contig12534.2141.1 ID=prot_H-canaliculatus_F_contig12534.2141.1|Name=mRNA_H-canaliculatus_F_contig12534.2141.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=135bp
SDPSRPPTAGCLQGHHVATLSVLVDPLLHQQHAFYTACALLVEFNTFLLI
LRRRVSWGNYLEVPFALSWVALRLVWYPFLGFYFAMCAFPEALTPVYPER
LVAWRVAVEEERPVAMYLGSYLAWVGICVFQGWWS
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mRNA from alignment at H-canaliculatus_F_contig12534:559..1693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12534.2141.1 ID=mRNA_H-canaliculatus_F_contig12534.2141.1|Name=mRNA_H-canaliculatus_F_contig12534.2141.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1135bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12534:559..1693+ (Hapterophycus canaliculatus Oshoro5f female)
TCTGATCCCTCGCGCCCGCCGACCGCCGGATGTCTGCAGGGTCACCACGT CGCCACACTCTCGGTGCTGGTAGACCCTCTGCTGCACCAGCAGCACGCCT TCTACACGGCGTGCGCGCTACTCGTGGAGTTCAACACGTTCCTCCTCATC CTGCGGCGGCGGGTTTCCTGGGGGAACTACCTGGAGGTGCCCTTCGCGCT GTCGTGGGTCGCGCTGAGATTAGTGTGGTGAGAGGTTGCAGTAGCGAACA GGCTACGAGGCCGCGTCGCGCGTGCGACTCGCCGTGTACGGTTATTTTTG CCAACCCGCGTGTTCCGATTGGCTGCAGTCGGGTCTGGTCAGGTCGGCGC TTTGCGGGGAAGCGTCTTAACCTGAAAAGAGTTGGCACGAGCAATGGAAC GCTCTCCACGACAACACTCGGGTTGCCTGTTGGGTTCGATACCGTCGGGA TTGGTTTTGGGGCGTTCGTCACGTCAGTCGTATTCGAAAGGGTAGAGTTA ATGTAGCCACGCCAAATGGTGCTCATACCACTTGGAGGACCCTGAAATAT TCATATTTTCCACTGCTGTCCGGCACGTCGGGCACCCTTCTTTCCCGTAG TTTGTCAGAGAATGGCGCAGTCCAACGATGTATTTTGTATGCTACATCGC ACAGGCCGCGTACGTAGGACCAACCAACACGGACCACGCTACACGCTGCC ATGCCGGCCGCTTCTCTCTGCAGCAGAGACCGCACCCCATCCCGAACGTG ACAGCGCGTTGGAAAGCCGCTTGCACCCCGAGGGAAGCAAAATGCCGTAC CGCACCAGCAACCCCCCGGCCGCTAGCCAGAGCGGAAGGGGTGCAAGCAA AATGCGGCGATGATCGTCGGTTGAAAACTGTATAGGACAAGACCACCCAC CCGTCGACGCCGCCGACAACCCCTCCCCTCCTCTCCCATCCCCTCCCCGC TCTCCAGGTACCCCTTTCTCGGCTTTTATTTCGCCATGTGCGCTTTCCCG GAGGCGCTCACGCCGGTTTATCCCGAGCGGCTTGTGGCGTGGAGGGTGGC GGTGGAAGAGGAAAGGCCCGTGGCCATGTATCTCGGCAGCTACCTCGCCT GGGTGGGCATCTGCGTCTTCCAGGGGTGGTGGTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12534:559..1693+

>mRNA_H-canaliculatus_F_contig12534.2141.1 ID=mRNA_H-canaliculatus_F_contig12534.2141.1|Name=mRNA_H-canaliculatus_F_contig12534.2141.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=810bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12534:559..1693+ (Hapterophycus canaliculatus Oshoro5f female)
TCTGATCCCTCGCGCCCGCCGACCGCCGGATGTCTGCAGGGTCACCACGT
CGCCACACTCTCGGTGCTGGTAGACCCTCTGCTGCACCAGCAGCACGCCT
TCTACACGGCGTGCGCGCTACTCGTGGAGTTCAACACGTTCCTCCTCATC
CTGCGGCGGCGGGTTTCCTGGGGGAACTACCTGGAGGTGCCCTTCGCGCT
GTCGTGGGTCGCGCTGAGATTAGTGTGTCTGATCCCTCGCGCCCGCCGAC
CGCCGGATGTCTGCAGGGTCACCACGTCGCCACACTCTCGGTGCTGGTAG
ACCCTCTGCTGCACCAGCAGCACGCCTTCTACACGGCGTGCGCGCTACTC
GTGGAGTTCAACACGTTCCTCCTCATCCTGCGGCGGCGGGTTTCCTGGGG
GAACTACCTGGAGGTGCCCTTCGCGCTGTCGTGGGTCGCGCTGAGATTAG
TGTGGTACCCCTTTCTCGGCTTTTATTTCGCCATGTGCGCTTTCCCGGAG
GCGCTCACGCCGGTTTATCCCGAGCGGCTTGTGGCGTGGAGGGTGGCGGT
GGAAGAGGAAAGGCCCGTGGCCATGTATCTCGGCAGCTACCTCGCCTGGG
TGGGCATCTGCGTCTTCCAGGGGTGGTGGTCGGTACCCCTTTCTCGGCTT
TTATTTCGCCATGTGCGCTTTCCCGGAGGCGCTCACGCCGGTTTATCCCG
AGCGGCTTGTGGCGTGGAGGGTGGCGGTGGAAGAGGAAAGGCCCGTGGCC
ATGTATCTCGGCAGCTACCTCGCCTGGGTGGGCATCTGCGTCTTCCAGGG
GTGGTGGTCG
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