mRNA_H-canaliculatus_F_contig12517.2133.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12517.2133.1
Unique NamemRNA_H-canaliculatus_F_contig12517.2133.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12517.2133.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.220e-14
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 LRGRKHFLPPRALEMGFAMLFKLDDSCLAAHAGERR 108
            +RGRKHFLPPRALEMGFA+LFKLDDSCLAAHAGERR
Sbjct:  781 VRGRKHFLPPRALEMGFALLFKLDDSCLAAHAGERR 816
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BLAST of mRNA_H-canaliculatus_F_contig12517.2133.1 vs. uniprot
Match: A0A835SUG3_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SUG3_CHLIN)

HSP 1 Score: 60.1 bits (144), Expect = 3.270e-9
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 LRGRKHFLPPRALEMGFAMLFKLDDSCLAAHAGER 105
            +RGRK+FLPP+ L MGF  LFKLDDSC+AAH GER
Sbjct:  726 IRGRKNFLPPQPLVMGFGFLFKLDDSCIAAHLGER 760
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BLAST of mRNA_H-canaliculatus_F_contig12517.2133.1 vs. uniprot
Match: A0A7S2FGW6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FGW6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.280e-9
Identity = 25/51 (49.02%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 LRGRKHFLPPRALEMGFAMLFKLDDSCLAAHAGERREKLTNAEEEERDAAS 153
            +RG+K++L P  LEMG A+LF++DDSC+  H GERR+++  ++E +  AAS
Sbjct:   91 IRGKKNYLNPAPLEMGLALLFRVDDSCVGQHLGERRDRVDQSDEYDESAAS 141
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BLAST of mRNA_H-canaliculatus_F_contig12517.2133.1 vs. uniprot
Match: A0A7S0G355_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G355_9RHOD)

HSP 1 Score: 58.9 bits (141), Expect = 8.140e-9
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 LRGRKHFLPPRALEMGFAMLFKLDDSCLAAHAGERREK 114
            +RG+K+FLPP ALE G  MLFK+DDSC A HAGER  K
Sbjct:  209 IRGKKNFLPPMALEFGLGMLFKIDDSCKANHAGERSRK 246
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BLAST of mRNA_H-canaliculatus_F_contig12517.2133.1 vs. uniprot
Match: A0A2K3CRB8_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CRB8_CHLRE)

HSP 1 Score: 58.9 bits (141), Expect = 8.330e-9
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 LRGRKHFLPPRALEMGFAMLFKLDDSCLAAHAGER 105
            +RG+K+FLPP+ L MGF  LFKLDDSC+AAH GER
Sbjct:  326 IRGKKNFLPPQPLVMGFGFLFKLDDSCIAAHLGER 360
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BLAST of mRNA_H-canaliculatus_F_contig12517.2133.1 vs. uniprot
Match: A0A836BCC2_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BCC2_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 8.350e-9
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 LRGRKHFLPPRALEMGFAMLFKLDDSCLAAHAGER 105
            +RG+K+FLPP+ L MGF  LFKLDDSC+AAH GER
Sbjct:  736 IRGKKNFLPPQPLVMGFGFLFKLDDSCIAAHLGER 770
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BLAST of mRNA_H-canaliculatus_F_contig12517.2133.1 vs. uniprot
Match: E4Y2V7_OIKDI (Uncharacterized protein (Fragment) n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4Y2V7_OIKDI)

HSP 1 Score: 56.6 bits (135), Expect = 5.390e-8
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 LRGRKHFLPPRALEMGFAMLFKLDDSCLAAHAGERREKLTNAEEEERDAASL 156
            +RG+K++LPP  L +GF  LFKLDD+C+A HAGER+ K    + EE++ + L
Sbjct:   72 IRGKKNYLPPSQLVLGFGFLFKLDDACVARHAGERKIKGLVNDVEEKEQSEL 123
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BLAST of mRNA_H-canaliculatus_F_contig12517.2133.1 vs. uniprot
Match: E4Y2A4_OIKDI (NFACT-R_1 domain-containing protein (Fragment) n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4Y2A4_OIKDI)

HSP 1 Score: 56.6 bits (135), Expect = 5.440e-8
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 LRGRKHFLPPRALEMGFAMLFKLDDSCLAAHAGERREKLTNAEEEERDAASL 156
            +RG+K++LPP  L +GF  LFKLDD+C+A HAGER+ K    + EE++ + L
Sbjct:  621 IRGKKNYLPPSQLVLGFGFLFKLDDACVARHAGERKIKGLVNDVEEKEQSEL 672
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BLAST of mRNA_H-canaliculatus_F_contig12517.2133.1 vs. uniprot
Match: L1JVV4_GUITC (NFACT-R_1 domain-containing protein (Fragment) n=5 Tax=Geminigeraceae TaxID=589343 RepID=L1JVV4_GUITC)

HSP 1 Score: 56.6 bits (135), Expect = 5.440e-8
Identity = 24/46 (52.17%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 LRGRKHFLPPRALEMGFAMLFKLDDSCLAAHAGERREKLTNAEEEE 138
            +RG+K++LPP +L MGF +LF++D+SCLA H GER+ +    +EEE
Sbjct:  604 IRGKKNYLPPNSLIMGFGLLFRIDESCLAHHVGERKIRGLGEQEEE 649
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BLAST of mRNA_H-canaliculatus_F_contig12517.2133.1 vs. uniprot
Match: A0A6U1AHC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 7.460e-8
Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 LRGRKHFLPPRALEMGFAMLFKLDDSCLAAHAGERREKLTN 123
            +RG+K++L    LEMG A+LF++DDSCLA H  ERREKLT+
Sbjct:  644 IRGKKNYLSTVPLEMGIALLFRVDDSCLARHMNERREKLTS 684
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12517.2133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHP2_ECTSI1.220e-1494.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835SUG3_CHLIN3.270e-974.29Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A7S2FGW6_9STRA4.280e-949.02Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S0G355_9RHOD8.140e-968.42Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A2K3CRB8_CHLRE8.330e-971.43Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A836BCC2_9CHLO8.350e-971.43Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
E4Y2V7_OIKDI5.390e-850.00Uncharacterized protein (Fragment) n=1 Tax=Oikople... [more]
E4Y2A4_OIKDI5.440e-850.00NFACT-R_1 domain-containing protein (Fragment) n=2... [more]
L1JVV4_GUITC5.440e-852.17NFACT-R_1 domain-containing protein (Fragment) n=5... [more]
A0A6U1AHC6_9STRA7.460e-860.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12517contigH-canaliculatus_F_contig12517:219..374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue8.3e-12
Seed eggNOG ortholog2880.D8LHP2
KEGG koko:K10589
KEGG Pathwayko04120,map04120
EggNOG free text desc.actin binding
EggNOG OGsCOG1293@1,KOG2030@2759
EC2.3.2.26
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928967.825633-CDS-H-canaliculatus_F_contig12517:218..3741622928967.825633-CDS-H-canaliculatus_F_contig12517:218..374Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12517 219..374 +
1696845633.7279432-CDS-H-canaliculatus_F_contig12517:218..3741696845633.7279432-CDS-H-canaliculatus_F_contig12517:218..374Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12517 219..374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12517.2133.1prot_H-canaliculatus_F_contig12517.2133.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12517 219..374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12517.2133.1

>prot_H-canaliculatus_F_contig12517.2133.1 ID=prot_H-canaliculatus_F_contig12517.2133.1|Name=mRNA_H-canaliculatus_F_contig12517.2133.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=52bp
LRGRKHFLPPRALEMGFAMLFKLDDSCLAAHAGERREKLTNAEEEERDAA
SL
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mRNA from alignment at H-canaliculatus_F_contig12517:219..374+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12517.2133.1 ID=mRNA_H-canaliculatus_F_contig12517.2133.1|Name=mRNA_H-canaliculatus_F_contig12517.2133.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=156bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12517:219..374+ (Hapterophycus canaliculatus Oshoro5f female)
CTCAGGGGGCGGAAGCATTTCCTTCCGCCCCGGGCGCTGGAGATGGGATT
CGCGATGCTGTTCAAGCTCGACGACTCCTGCCTGGCGGCGCACGCCGGGG
AGCGGCGGGAGAAGCTCACCAACGCGGAGGAGGAGGAAAGAGACGCTGCT
TCCCTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12517:219..374+

>mRNA_H-canaliculatus_F_contig12517.2133.1 ID=mRNA_H-canaliculatus_F_contig12517.2133.1|Name=mRNA_H-canaliculatus_F_contig12517.2133.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=312bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12517:219..374+ (Hapterophycus canaliculatus Oshoro5f female)
CTCAGGGGGCGGAAGCATTTCCTTCCGCCCCGGGCGCTGGAGATGGGATT
CGCGATGCTGTTCAAGCTCGACGACTCCTGCCTGGCGGCGCACGCCGGGG
AGCGGCGGGAGAAGCTCACCAACGCGGAGGAGGAGGAAAGAGACGCTGCT
TCCCTTCTCAGGGGGCGGAAGCATTTCCTTCCGCCCCGGGCGCTGGAGAT
GGGATTCGCGATGCTGTTCAAGCTCGACGACTCCTGCCTGGCGGCGCACG
CCGGGGAGCGGCGGGAGAAGCTCACCAACGCGGAGGAGGAGGAAAGAGAC
GCTGCTTCCCTT
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