mRNA_H-canaliculatus_F_contig1251.2127.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1251.2127.1
Unique NamemRNA_H-canaliculatus_F_contig1251.2127.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1251.2127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1251contigH-canaliculatus_F_contig1251:2929..3430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size502
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928967.2849896-CDS-H-canaliculatus_F_contig1251:2928..32611622928967.2849896-CDS-H-canaliculatus_F_contig1251:2928..3261Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1251 2929..3261 +
1696845633.386329-CDS-H-canaliculatus_F_contig1251:2928..32611696845633.386329-CDS-H-canaliculatus_F_contig1251:2928..3261Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1251 2929..3261 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928967.2965894-UTR-H-canaliculatus_F_contig1251:3261..34301622928967.2965894-UTR-H-canaliculatus_F_contig1251:3261..3430Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1251 3262..3430 +
1696845633.399963-UTR-H-canaliculatus_F_contig1251:3261..34301696845633.399963-UTR-H-canaliculatus_F_contig1251:3261..3430Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1251 3262..3430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1251.2127.1prot_H-canaliculatus_F_contig1251.2127.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1251 2929..3261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1251.2127.1

>prot_H-canaliculatus_F_contig1251.2127.1 ID=prot_H-canaliculatus_F_contig1251.2127.1|Name=mRNA_H-canaliculatus_F_contig1251.2127.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=111bp
PGSPRSPSITPQGHDRYTIVEHFNKTRVSEEGGRLKESWRLPGSIFPFTC
ASTCPSPCLTASATLTSRWNLWRGTWQALKHGVPVRAIWMLRMMQAEHIC
DTRSMKERDR*
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mRNA from alignment at H-canaliculatus_F_contig1251:2929..3430+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1251.2127.1 ID=mRNA_H-canaliculatus_F_contig1251.2127.1|Name=mRNA_H-canaliculatus_F_contig1251.2127.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=502bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1251:2929..3430+ (Hapterophycus canaliculatus Oshoro5f female)
CCAGGATCACCGAGGTCCCCTTCGATTACTCCACAGGGCCATGATAGATA
TACAATTGTAGAGCACTTCAATAAAACGAGGGTCAGCGAAGAGGGTGGGA
GACTCAAGGAGTCATGGAGGCTGCCGGGCAGCATCTTTCCCTTCACATGT
GCTTCTACCTGCCCTTCACCTTGTCTGACTGCCTCAGCAACTCTAACTTC
GAGGTGGAACTTGTGGCGGGGGACATGGCAAGCGCTCAAACACGGGGTCC
CCGTTCGAGCTATCTGGATGTTGCGCATGATGCAAGCGGAACACATTTGT
GATACACGAAGCATGAAGGAACGTGACCGCTAACAAGAAGATCAACGACA
ACCGCCAGGGGAGCAACAACAACATCAGCATCAACAGAAAACAGTACCCA
TGAATGGCACGACAATGATGACCACACCAATCCGACACGATGACCAGCCT
TCGCACGTTGTTCGCGAACTTTTACTACCCACCTCGGGAAACGAACCCGG
GC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1251:2929..3430+

>mRNA_H-canaliculatus_F_contig1251.2127.1 ID=mRNA_H-canaliculatus_F_contig1251.2127.1|Name=mRNA_H-canaliculatus_F_contig1251.2127.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=666bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1251:2929..3430+ (Hapterophycus canaliculatus Oshoro5f female)
CCAGGATCACCGAGGTCCCCTTCGATTACTCCACAGGGCCATGATAGATA
TACAATTGTAGAGCACTTCAATAAAACGAGGGTCAGCGAAGAGGGTGGGA
GACTCAAGGAGTCATGGAGGCTGCCGGGCAGCATCTTTCCCTTCACATGT
GCTTCTACCTGCCCTTCACCTTGTCTGACTGCCTCAGCAACTCTAACTTC
GAGGTGGAACTTGTGGCGGGGGACATGGCAAGCGCTCAAACACGGGGTCC
CCGTTCGAGCTATCTGGATGTTGCGCATGATGCAAGCGGAACACATTTGT
GATACACGAAGCATGAAGGAACGTGACCGCTAACCAGGATCACCGAGGTC
CCCTTCGATTACTCCACAGGGCCATGATAGATATACAATTGTAGAGCACT
TCAATAAAACGAGGGTCAGCGAAGAGGGTGGGAGACTCAAGGAGTCATGG
AGGCTGCCGGGCAGCATCTTTCCCTTCACATGTGCTTCTACCTGCCCTTC
ACCTTGTCTGACTGCCTCAGCAACTCTAACTTCGAGGTGGAACTTGTGGC
GGGGGACATGGCAAGCGCTCAAACACGGGGTCCCCGTTCGAGCTATCTGG
ATGTTGCGCATGATGCAAGCGGAACACATTTGTGATACACGAAGCATGAA
GGAACGTGACCGCTAA
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