mRNA_H-canaliculatus_F_contig125.2115.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig125.2115.1
Unique NamemRNA_H-canaliculatus_F_contig125.2115.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig125.2115.1 vs. uniprot
Match: A0A6H5KJ84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ84_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 5.580e-19
Identity = 59/112 (52.68%), Postives = 75/112 (66.96%), Query Frame = 2 
Query:  746 MAAFLREEGCSQADFIEVIRRAHAEGAPGTESLGSLVIETMKAIDDFESFANFMDNATAS----SDDGDDDFGCSRE-EKDGLRCRQESKDSEHDPDSQEECSGSAPRRKRK 1066
            MAAFLR+E C+QADF  V+ RAHAEGA G ESLGSLVIETM A+D+FESF NFM+N  A     + DG  D+   ++ E++  RCR ES  S+    S E  + +A R +RK
Sbjct:    1 MAAFLRDENCTQADFAAVLTRAHAEGALGKESLGSLVIETMTAVDEFESFTNFMNNTVAGEHEDNSDGAPDYTTVQDGEEESKRCRLESDGSDG---SNEGAADTAVRSRRK 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig125.2115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ84_9PHAE5.580e-1952.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig125contigH-canaliculatus_F_contig125:23255..25052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1520
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig125.2115.1prot_H-canaliculatus_F_contig125.2115.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig125 24000..24601 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928965.315598-UTR-H-canaliculatus_F_contig125:23254..239991622928965.315598-UTR-H-canaliculatus_F_contig125:23254..23999Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig125 23255..23999 +
1696845632.6306472-UTR-H-canaliculatus_F_contig125:23254..239991696845632.6306472-UTR-H-canaliculatus_F_contig125:23254..23999Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig125 23255..23999 +
1622928965.3750844-UTR-H-canaliculatus_F_contig125:24601..250521622928965.3750844-UTR-H-canaliculatus_F_contig125:24601..25052Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig125 24602..25052 +
1696845632.659791-UTR-H-canaliculatus_F_contig125:24601..250521696845632.659791-UTR-H-canaliculatus_F_contig125:24601..25052Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig125 24602..25052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928965.3373785-CDS-H-canaliculatus_F_contig125:23999..240931622928965.3373785-CDS-H-canaliculatus_F_contig125:23999..24093Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig125 24000..24093 +
1696845632.6419141-CDS-H-canaliculatus_F_contig125:23999..240931696845632.6419141-CDS-H-canaliculatus_F_contig125:23999..24093Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig125 24000..24093 +
1622928965.3561168-CDS-H-canaliculatus_F_contig125:24371..246011622928965.3561168-CDS-H-canaliculatus_F_contig125:24371..24601Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig125 24372..24601 +
1696845632.6517487-CDS-H-canaliculatus_F_contig125:24371..246011696845632.6517487-CDS-H-canaliculatus_F_contig125:24371..24601Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig125 24372..24601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig125.2115.1

>prot_H-canaliculatus_F_contig125.2115.1 ID=prot_H-canaliculatus_F_contig125.2115.1|Name=mRNA_H-canaliculatus_F_contig125.2115.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=108bp
MAAFLREEGCSQADFIEVIRRAHAEGAPGTESLGSLVIETMKAIDDFESF
ANFMDNATASSDDGDDDFGCSREEKDGLRCRQESKDSEHDPDSQEECSGS
APRRKRK*
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mRNA from alignment at H-canaliculatus_F_contig125:23255..25052+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig125.2115.1 ID=mRNA_H-canaliculatus_F_contig125.2115.1|Name=mRNA_H-canaliculatus_F_contig125.2115.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1798bp|location=Sequence derived from alignment at H-canaliculatus_F_contig125:23255..25052+ (Hapterophycus canaliculatus Oshoro5f female)
CGGTGGGCGGAAGGCAAGACTGTGCGCTGGAAAGAAAGCGCGGGAGGCGA
AGAAGGTGTCGAGGTGCATGGGCGTGCCCACTCGCAGGCGAGAGCAGCAA
CGCGTTCATTCATGCGTTTGTTGTGAGCGTGGCGTCCGGGAGTGGCGTCG
GGGCGTCAGGGAGTGAACAACGCGAAGCCGTGTTTACTTTTCAAGGAGGT
TTTCAAACGAAGCATTTGGCTAGGGCTGGCGTGACTGTCGTGTTTGCATT
CACTGCGTGTGTGGATAAGTACAAGGCGAGCGACGTCTTGCTTCTCCAAG
AAATCTACACAAAACTGTTGTAGGTTTGTTTGTTTGTTTATGCTTGACCC
GAAAGTAAAGCTGCATGTTTCCCGCGACTTCATCACCATCCACACGCACA
TCCAACACGTCAACGTTGCCCTCTTTGCCCCATTCGTTCTGTAACAAACG
AATCGCACGCTCGGCGCCTTTTTTGCGCTGGTCGACGACATTCGCACTGT
TTGTTTTCCGGGATCATCGCACTACCTTGGGTGGTTATTCTTGTCGGGCG
CCAACACTAGGTTGAAGATCATCAAGACTTCCGGTGAGAGACCTCGTGGG
TTCTTCTGAAAGTAAGGTCCTGATTGATCGGCCGCGATTTTCTGTTTGTA
GACCTGCAATCCGGACTGAGTGCGGGCACCGAGAAGTTGTCATGACGGCG
TGAGACTTTCCTCTTCTCTTTGGCAGGAAGTTATTCGAGGATGACATGGC
GGCTTTTTTAAGAGAGGAGGGATGCAGCCAAGCCGATTTTATCGAAGTCA
TCAGGCGTGCTCATGCGGAGGGGGCACCTGGGACAGAAAGTGAGAATGCG
CATCGCGACGTATCGGTTAATAGCTCGACCATGTAGGATTGCTACGCTGC
ATCTCCAAGTTGATCTATGGTAGGTTCATATTAGTATTCCGGCCAGCGCA
GAAACTATATCTGCGGGCCAGCGCAGATACTATCACAAGGTTGACCATCT
GGATCCGTTTTGTGTTTGACTTCCACGTCCCAACGCAGGATTGTTTTCAT
CCTCTGTTTTTGATCTGCTGTATGCGACATAACACTGTCGTTGTCCGATT
CCCTAATCGCAAAACAGGCCTGGGGAGTCTGGTTATCGAAACGATGAAGG
CGATCGACGATTTCGAGTCTTTCGCAAATTTCATGGACAACGCTACTGCC
AGTAGTGACGACGGCGATGATGATTTCGGCTGCTCGCGAGAGGAGAAAGA
TGGATTGCGGTGTCGGCAAGAGAGCAAGGATAGCGAACATGATCCGGATA
GCCAGGAGGAGTGTAGCGGCAGCGCTCCCAGAAGGAAAAGGAAGTGATCC
CTATCGTACTGTAGCTCTTCGGGGAATCATGCCTCGTCAAGGATTCTCCA
CTTTATTTGGGTGGGCTGAGAGCCACGTCATTTGCCGTAGCTGCCAGATC
CCACGTACAATACTCGCTCAGAGGAGTTGTCCAGACATGGCATCGATTTT
GAGCAGAATTCCACGACAAGACGTTTCACTGACGTGAAATTGGCAAGCTT
TTTCACTAACGGAAAAAACGACAACGTCATGGTGTGAATATGTTGAGACA
ACTCTTTTCTATGATACCATCAAAACCAACCCCGAAAGTTCCTAGCGTGG
CCATAAACTCTCGTTTTCGTATCCGAGGCAGTTTACTACACTATGGCTAG
TTGCGGGTCGTGGCATAGATGGATGGCCTCCCTTTGAGTTTCTTCTTTTA
ACCGACTGAGGCGATTCGTTGATATGTAAGAGTTGGTGGCGGAATCTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig125:23255..25052+

>mRNA_H-canaliculatus_F_contig125.2115.1 ID=mRNA_H-canaliculatus_F_contig125.2115.1|Name=mRNA_H-canaliculatus_F_contig125.2115.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig125:23255..25052+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGGCTTTTTTAAGAGAGGAGGGATGCAGCCAAGCCGATTTTATCGA
AGTCATCAGGCGTGCTCATGCGGAGGGGGCACCTGGGACAGAAAATGGCG
GCTTTTTTAAGAGAGGAGGGATGCAGCCAAGCCGATTTTATCGAAGTCAT
CAGGCGTGCTCATGCGGAGGGGGCACCTGGGACAGAAAGCCTGGGGAGTC
TGGTTATCGAAACGATGAAGGCGATCGACGATTTCGAGTCTTTCGCAAAT
TTCATGGACAACGCTACTGCCAGTAGTGACGACGGCGATGATGATTTCGG
CTGCTCGCGAGAGGAGAAAGATGGATTGCGGTGTCGGCAAGAGAGCAAGG
ATAGCGAACATGATCCGGATAGCCAGGAGGAGTGTAGCGGCAGCGCTCCC
AGAAGGAAAAGGAAGTGAGCCTGGGGAGTCTGGTTATCGAAACGATGAAG
GCGATCGACGATTTCGAGTCTTTCGCAAATTTCATGGACAACGCTACTGC
CAGTAGTGACGACGGCGATGATGATTTCGGCTGCTCGCGAGAGGAGAAAG
ATGGATTGCGGTGTCGGCAAGAGAGCAAGGATAGCGAACATGATCCGGAT
AGCCAGGAGGAGTGTAGCGGCAGCGCTCCCAGAAGGAAAAGGAAGTGA
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