mRNA_H-canaliculatus_F_contig12492.2107.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12492.2107.1
Unique NamemRNA_H-canaliculatus_F_contig12492.2107.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12492.2107.1 vs. uniprot
Match: D8LK04_ECTSI (Na+/K+-ATPase alpha 1 subunit (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK04_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 2.260e-44
Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:    1 SVYKWGQGGALVEGVDEATVGLLDEHKLSIKALADRYCTDLDSARPEQSRGVEQERATQILSMIGPNELTPAPTDPAWKLFIKELLAPL 267
            SV+KW QGGAL+EG+DEAT+GLLDEH+LSIK L +RYCTDL+S RPE S GV  ERATQ+LSMIGPNELTP PT+PAWKLF+KELLAPL
Sbjct:  124 SVFKWDQGGALIEGIDEATIGLLDEHRLSIKTLGERYCTDLNSERPEHSGGVNPERATQVLSMIGPNELTPPPTEPAWKLFLKELLAPL 212
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BLAST of mRNA_H-canaliculatus_F_contig12492.2107.1 vs. uniprot
Match: A0A6H5JGR4_9PHAE (Cation_ATPase_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR4_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 8.110e-39
Identity = 67/89 (75.28%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:    1 SVYKWGQGGALVEGVDEATVGLLDEHKLSIKALADRYCTDLDSARPEQSRGVEQERATQILSMIGPNELTPAPTDPAWKLFIKELLAPL 267
            SV+KW QGGAL+EG+DEAT+GLLDEH+LSIK L +RYCTDL+S RPE S GV  ERA Q+L+MIGPNELTP PT+P WKLF+KELLAPL
Sbjct:  142 SVFKWDQGGALIEGIDEATIGLLDEHRLSIKTLGERYCTDLNSERPEHSGGVNPERAMQVLNMIGPNELTPPPTEPGWKLFLKELLAPL 230
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BLAST of mRNA_H-canaliculatus_F_contig12492.2107.1 vs. uniprot
Match: A0A8C1J2J1_CYPCA (Sodium/potassium-transporting ATPase subunit alpha n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1J2J1_CYPCA)

HSP 1 Score: 56.6 bits (135), Expect = 2.490e-7
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   67 LDEHKLSIKALADRYCTDLDSARPEQSRGVEQERATQILSMIGPNELTPAPTDPAWKLFIKEL 255
            LD+HKLS+  L  +Y TDL       + G+  +RA +IL+  GPN LTP PT P W  F K+L
Sbjct:   44 LDDHKLSLDELTQKYSTDL-------TMGLTNDRAKEILARDGPNALTPPPTTPEWVKFCKQL 99
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BLAST of mRNA_H-canaliculatus_F_contig12492.2107.1 vs. uniprot
Match: A0A8C1J0K8_CYPCA (Sodium/potassium-transporting ATPase subunit alpha n=3 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1J0K8_CYPCA)

HSP 1 Score: 56.6 bits (135), Expect = 2.490e-7
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   67 LDEHKLSIKALADRYCTDLDSARPEQSRGVEQERATQILSMIGPNELTPAPTDPAWKLFIKEL 255
            LD+HKLS+  L  +Y TDL       + G+  +RA +IL+  GPN LTP PT P W  F K+L
Sbjct:   44 LDDHKLSLDELTQKYSTDL-------TMGLTNDRAKEILARDGPNALTPPPTTPEWVKFCKQL 99
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BLAST of mRNA_H-canaliculatus_F_contig12492.2107.1 vs. uniprot
Match: A0A4W4F667_ELEEL (Sodium/potassium-transporting ATPase subunit alpha n=3 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4F667_ELEEL)

HSP 1 Score: 55.1 bits (131), Expect = 8.690e-7
Identity = 28/63 (44.44%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:   67 LDEHKLSIKALADRYCTDLDSARPEQSRGVEQERATQILSMIGPNELTPAPTDPAWKLFIKEL 255
            LD+HKL++  L  +Y TDL+       RG+    A +IL+  GPN LTP PT P W  F K+L
Sbjct:   33 LDDHKLTLDELQQKYSTDLN-------RGLSSSHAKEILARDGPNALTPPPTTPEWVKFCKQL 88
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12492.2107.1 vs. uniprot
Match: A0A1Y2HI79_9FUNG (P-type cation-transporting ATPase n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HI79_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 8.710e-7
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:   67 LDEHKLSIKALADRYCTDLDSARPEQSRGVEQERATQILSMIGPNELTPAPTDPAWKLFIKELLA 261
            LDEHKL++  + DRY T  D ++P  S G+  E A + L+  GPN+++PA T   +  FI+ LLA
Sbjct:   12 LDEHKLTLDEICDRYKTAADPSQPASSPGLTPEEAARRLAADGPNQMSPAKTTHPFIKFIEHLLA 76
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BLAST of mRNA_H-canaliculatus_F_contig12492.2107.1 vs. uniprot
Match: H9GUW4_ANOCA (Sodium/potassium-transporting ATPase subunit alpha n=2 Tax=Anolis carolinensis TaxID=28377 RepID=H9GUW4_ANOCA)

HSP 1 Score: 54.7 bits (130), Expect = 1.190e-6
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   67 LDEHKLSIKALADRYCTDLDSARPEQSRGVEQERATQILSMIGPNELTPAPTDPAWKLFIKEL 255
            +D+HKLS++ LA +Y TDL       S G+   +A +IL+  GPN LTP PT P W  F ++L
Sbjct:   28 IDDHKLSLEELAQKYKTDL-------STGLTTTQAAEILARDGPNALTPPPTTPEWVKFCRQL 83
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12492.2107.1 vs. uniprot
Match: UPI0015AA120B (sodium/potassium-transporting ATPase subunit alpha-2 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015AA120B)

HSP 1 Score: 54.7 bits (130), Expect = 1.190e-6
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   67 LDEHKLSIKALADRYCTDLDSARPEQSRGVEQERATQILSMIGPNELTPAPTDPAWKLFIKEL 255
            LD+HK+S+  L+DRY  DL       S+G+   +A +IL+  GPN LTP PT P W  F ++L
Sbjct:   36 LDDHKVSLAELSDRYGVDL-------SKGLTNVQALEILARDGPNALTPPPTTPEWVKFCRQL 91
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12492.2107.1 vs. uniprot
Match: A0A401NUX9_SCYTO (Sodium/potassium-transporting ATPase subunit alpha n=6 Tax=Galeoidea TaxID=119195 RepID=A0A401NUX9_SCYTO)

HSP 1 Score: 54.3 bits (129), Expect = 1.630e-6
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   67 LDEHKLSIKALADRYCTDLDSARPEQSRGVEQERATQILSMIGPNELTPAPTDPAWKLFIKEL 255
            LD+HK+++  L  RY TDL+       RG+   RA ++L+  GPN LTP PT P W  F ++L
Sbjct:   75 LDDHKITLDELQQRYGTDLN-------RGLTNTRAKEVLARDGPNALTPPPTTPEWVKFCRQL 130
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12492.2107.1 vs. uniprot
Match: V9XQA5_HIMSI (Sodium/potassium-transporting ATPase subunit alpha n=1 Tax=Himantura signifer TaxID=87132 RepID=V9XQA5_HIMSI)

HSP 1 Score: 53.9 bits (128), Expect = 2.220e-6
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   67 LDEHKLSIKALADRYCTDLDSARPEQSRGVEQERATQILSMIGPNELTPAPTDPAWKLFIKEL 255
            L++HKLS+  L  +Y TDL       +RG+   RA +IL+  GPN LTP PT P W  F K+L
Sbjct:   42 LEDHKLSLDDLHQKYGTDL-------TRGLTATRAKEILARDGPNALTPPPTTPEWVKFCKQL 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12492.2107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LK04_ECTSI2.260e-4478.65Na+/K+-ATPase alpha 1 subunit (Partial) (Fragment)... [more]
A0A6H5JGR4_9PHAE8.110e-3975.28Cation_ATPase_N domain-containing protein n=1 Tax=... [more]
A0A8C1J2J1_CYPCA2.490e-746.03Sodium/potassium-transporting ATPase subunit alpha... [more]
A0A8C1J0K8_CYPCA2.490e-746.03Sodium/potassium-transporting ATPase subunit alpha... [more]
A0A4W4F667_ELEEL8.690e-744.44Sodium/potassium-transporting ATPase subunit alpha... [more]
A0A1Y2HI79_9FUNG8.710e-743.08P-type cation-transporting ATPase n=1 Tax=Catenari... [more]
H9GUW4_ANOCA1.190e-644.44Sodium/potassium-transporting ATPase subunit alpha... [more]
UPI0015AA120B1.190e-644.44sodium/potassium-transporting ATPase subunit alpha... [more]
A0A401NUX9_SCYTO1.630e-642.86Sodium/potassium-transporting ATPase subunit alpha... [more]
V9XQA5_HIMSI2.220e-646.03Sodium/potassium-transporting ATPase subunit alpha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12492contigH-canaliculatus_F_contig12492:183..893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCation-transporting P-type ATPase, N-terminal
Ec32 orthologEc-06_007670.1
Exons2
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928964.3989878-CDS-H-canaliculatus_F_contig12492:182..3591622928964.3989878-CDS-H-canaliculatus_F_contig12492:182..359Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12492 183..359 +
1696845632.3012896-CDS-H-canaliculatus_F_contig12492:182..3591696845632.3012896-CDS-H-canaliculatus_F_contig12492:182..359Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12492 183..359 +
1622928964.4126658-CDS-H-canaliculatus_F_contig12492:803..8931622928964.4126658-CDS-H-canaliculatus_F_contig12492:803..893Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12492 804..893 +
1696845632.3204212-CDS-H-canaliculatus_F_contig12492:803..8931696845632.3204212-CDS-H-canaliculatus_F_contig12492:803..893Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12492 804..893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12492.2107.1prot_H-canaliculatus_F_contig12492.2107.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12492 183..893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12492.2107.1

>prot_H-canaliculatus_F_contig12492.2107.1 ID=prot_H-canaliculatus_F_contig12492.2107.1|Name=mRNA_H-canaliculatus_F_contig12492.2107.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=89bp
SVYKWGQGGALVEGVDEATVGLLDEHKLSIKALADRYCTDLDSARPEQSR
GVEQERATQILSMIGPNELTPAPTDPAWKLFIKELLAPL
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mRNA from alignment at H-canaliculatus_F_contig12492:183..893+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12492.2107.1 ID=mRNA_H-canaliculatus_F_contig12492.2107.1|Name=mRNA_H-canaliculatus_F_contig12492.2107.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=711bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12492:183..893+ (Hapterophycus canaliculatus Oshoro5f female)
AGCGTCTACAAATGGGGCCAGGGCGGCGCTCTCGTAGAGGGAGTGGACGA
GGCCACCGTAGGCCTCCTGGACGAGCATAAGCTGTCCATCAAGGCTCTCG
CGGACCGGTACTGCACCGACCTCGACTCTGCCCGGCCGGAGCAGAGCCGT
GGCGTGGAGCAAGAGCGAGCGACGCAGGTGCTGGCCGGGATAGAACCGAG
CTGCCGCTTGTCTTCCGCCAGTGTTTCGTGCTCCTTGCCTTGCTGTGTCA
GTCCGTAGCATGGGTTGAACGGTCACGGTGTTGTCGTTGTTGTTGCAATT
ATGCCTTGTAATGTTGTAATCGCCTCCGTTGTGACGAGAATCGAGAAAAC
TGCGTCATGGTGCGGCGAGACGAATGCCGTAGAAACGTCGCAGCTTGAAT
GCTCCCCCGGACCTACGCCTGGGCACAGACCCGAACGCCACGTGCGTGCC
CTCGCGGACCCATCACCATTACCATCCCTCTCGGAAGATCACGGTCAGCA
GGCGTGCCGTAGCTCGCTCTTCGTGTGCCAAATGCTGTTTCGACAACGTG
GCCTACTTGGGTGACGGCACTCACGGAATCCACCTGGCGTAAATGCGCAC
GCCCGATATCGTGCCGTACAGATTTTGAGCATGATCGGGCCGAACGAGCT
CACCCCTGCGCCGACGGATCCTGCGTGGAAGCTTTTCATAAAGGAGCTGC
TGGCGCCGCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12492:183..893+

>mRNA_H-canaliculatus_F_contig12492.2107.1 ID=mRNA_H-canaliculatus_F_contig12492.2107.1|Name=mRNA_H-canaliculatus_F_contig12492.2107.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=534bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12492:183..893+ (Hapterophycus canaliculatus Oshoro5f female)
AGCGTCTACAAATGGGGCCAGGGCGGCGCTCTCGTAGAGGGAGTGGACGA
GGCCACCGTAGGCCTCCTGGACGAGCATAAGCTGTCCATCAAGGCTCTCG
CGGACCGGTACTGCACCGACCTCGACTCTGCCCGGCCGGAGCAGAGCCGT
GGCGTGGAGCAAGAGCGAGCGACGCAGAGCGTCTACAAATGGGGCCAGGG
CGGCGCTCTCGTAGAGGGAGTGGACGAGGCCACCGTAGGCCTCCTGGACG
AGCATAAGCTGTCCATCAAGGCTCTCGCGGACCGGTACTGCACCGACCTC
GACTCTGCCCGGCCGGAGCAGAGCCGTGGCGTGGAGCAAGAGCGAGCGAC
GCAGATTTTGAGCATGATCGGGCCGAACGAGCTCACCCCTGCGCCGACGG
ATCCTGCGTGGAAGCTTTTCATAAAGGAGCTGCTGGCGCCGCTCATTTTG
AGCATGATCGGGCCGAACGAGCTCACCCCTGCGCCGACGGATCCTGCGTG
GAAGCTTTTCATAAAGGAGCTGCTGGCGCCGCTC
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