mRNA_H-canaliculatus_F_contig1249.2104.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1249.2104.1
Unique NamemRNA_H-canaliculatus_F_contig1249.2104.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1249.2104.1 vs. uniprot
Match: D7FJ29_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ29_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 3.330e-70
Identity = 172/191 (90.05%), Postives = 180/191 (94.24%), Query Frame = 2 
Query:  728 LKHRPVMNLHDDRGFTMSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVANVDTGFSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSEGDVAEVEAEAERRSALGELHADEFNPYGQAYLEAED 1300
            L+HRPVMNLH++RGFTMSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTV +VDTGFSAE        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSE DVAE+EAEAERRSALGELHADEFNPYGQ Y++AE+
Sbjct:   16 LRHRPVMNLHEERGFTMSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVGHVDTGFSAEVAIESWVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSEEDVAEIEAEAERRSALGELHADEFNPYGQGYVQAEE 206
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BLAST of mRNA_H-canaliculatus_F_contig1249.2104.1 vs. uniprot
Match: A0A7S3GN43_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GN43_9STRA)

HSP 1 Score: 119 bits (298), Expect = 9.660e-27
Identity = 86/189 (45.50%), Postives = 112/189 (59.26%), Query Frame = 2 
Query:  731 KHRPVMNLHDDRGFTMSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVANVDTGFSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSEGDVAEVEAEAERRSALGELHADEFNPYGQAYLEAE 1297
            +HR VMNL+D R    +  FVAP ASVVG+V + D   +WYGAV+RGDKNK+K+G   +V D+AVI+TVAN++TGF A                                      XXXXXXXXXXXXXXXXXXXX N+LWAGNPA +VR +++ +   ++  AE  + +G  H +EF P+G  Y  AE
Sbjct:   38 RHRAVMNLYDKRPIIAAGGFVAPNASVVGDVLLFDEVSIWYGAVLRGDKNKIKVGRLTNVQDRAVISTVANLNTGFPANVEIGDSVTIGHGALITSATIGNRVLVGQGSIIQEGAEXXXXXXXXXXXXXXXXXXXXSNQLWAGNPAVYVRDVTDEESVGIKKSAEHYAEVGRTHGEEFLPFGTTYQAAE 226
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BLAST of mRNA_H-canaliculatus_F_contig1249.2104.1 vs. uniprot
Match: W7TW63_9STRA (Trimeric LpxA n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TW63_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.520e-25
Identity = 101/199 (50.75%), Postives = 121/199 (60.80%), Query Frame = 2 
Query:  707 GNGRHSDL--KHRPVMNLHDDRGFTMSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVANVDTGFSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSEGDVAEVEAEAERRSALGELHADEFNPYGQAYLEAE 1297
            G+ +H +L  +HR V NL D R    S  FV+P A+VVG V + D   +WYGAVIRGD+N VKIG   +V D AVI TV ++D+GF A                             XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ELW GNP KF+RKL + +V    A AE   AL + H +EF P+G AYL+AE
Sbjct:   59 GSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAE 257
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BLAST of mRNA_H-canaliculatus_F_contig1249.2104.1 vs. uniprot
Match: A0A7S3AQF6_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AQF6_9EUKA)

HSP 1 Score: 112 bits (281), Expect = 2.670e-24
Identity = 95/190 (50.00%), Postives = 114/190 (60.00%), Query Frame = 2 
Query:  731 KHRPVMNLHDDRGFTMSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVANVDTGFSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSEGDVAEVEAEAERRSALGELHADEFNPYGQAYLEAED 1300
            +HR +MNL D R       F+AP A++VGNV + D S VWYGAVIRGD++ V IG + ++GD+ VI + A   TGFSA                               XXXXXXXXXXXXXXXXXXXXXXXXXXX  E+W G+PA F+RKLS+ +V E E  AE  SALG  HADEF  Y   Y  AE+
Sbjct:   50 RHRALMNLFDQRPKIGGRVFIAPNATIVGNVDVKDESSVWYGAVIRGDQSNVYIGGYTNIGDRTVIQSAAINPTGFSARTYIGDFVTVGQGCILRACTVDDKSVIGDGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEVWGGSPAAFIRKLSKEEVTEHEQGAEATSALGAKHADEFLHYSTTYQLAEE 239
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BLAST of mRNA_H-canaliculatus_F_contig1249.2104.1 vs. uniprot
Match: A0A5A8CT95_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CT95_CAFRO)

HSP 1 Score: 107 bits (268), Expect = 9.860e-23
Identity = 80/189 (42.33%), Postives = 104/189 (55.03%), Query Frame = 2 
Query:  731 KHRPVMNLHDDRGFTMSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVANVDTGFSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSEGDVAEVEAEAERRSALGELHADEFNPYGQAYLEAE 1297
            +HRPVMNL D    T  + FVAP A+VVGNV I   S VWYGAV+RGD+ +V+IG + ++ D+AV+ T   V+   S                                     XXXXXXXXXXXXXXX         +LWAGNPA+FVR L++ ++A +E +AE  S+L E HA EF P    +L+AE
Sbjct:   39 RHRPVMNLFDKHPVTDPSVFVAPNATVVGNVTIAHKSNVWYGAVVRGDQARVEIGGYTNIQDRAVVTTAKEVEGQSSGVTKIGSHVTVCPGAVLRSCVVEGHNRIGAGAVVNDGXXXXXXXXXXXXXXXHPGRRIPGGQLWAGNPAEFVRNLTKEEMAALEIDAEAASSLAEEHAAEFLPTSAVHLDAE 227
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BLAST of mRNA_H-canaliculatus_F_contig1249.2104.1 vs. uniprot
Match: K3WLJ5_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WLJ5_GLOUD)

HSP 1 Score: 107 bits (268), Expect = 1.140e-22
Identity = 80/189 (42.33%), Postives = 112/189 (59.26%), Query Frame = 2 
Query:  731 KHRPVMNLHDDRGFTMSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVANVDTGFSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSEGDVAEVEAEAERRSALGELHADEFNPYGQAYLEAE 1297
            +HR VMNL++ R       +VAP A++VG+V I + + VWY  VIRGD N+V+IG   ++ D+ VI+T +  + G S                                     XXXXXXXXXXXXXXXXXXXXXX  +LWAGNPAK+VR +S+ +V+++  +A+   ++ + H+DEF PYG AYL+AE
Sbjct:   39 RHRQVMNLYEKRPVIAHDVWVAPNATIVGDVEICNDASVWYNVVIRGDLNQVRIGNRTNIQDRTVIHTASTTNAGLSPGASIGNDVTVGHGCILYSCTIENNSLIGMGSIILDGXXXXXXXXXXXXXXXXXXXXXXSGQLWAGNPAKYVRDISDDEVSDIVKQAKEYKSIADTHSDEFLPYGTAYLDAE 227
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1249.2104.1 vs. uniprot
Match: A0A835YZE2_9STRA (Trimeric LpxA-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE2_9STRA)

HSP 1 Score: 105 bits (262), Expect = 8.600e-22
Identity = 66/191 (34.55%), Postives = 89/191 (46.60%), Query Frame = 2 
Query:  731 KHRPVMNLHDDRGFT-MSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVANVDTGFSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSEGDVAEVEAEAERRSALGELHADEFNPYGQAYLEAED 1300
            +HRP+M L+           FVAP ASVVG+V ++D + +WYGAV+RGDK+ + +G    VGDK VINTVA + TGF A+                                               XXX         ++W GNPA++V  +    VA  + EAER+  L E H +EFNP   A+  AED
Sbjct:   46 RHRPLMILNGKAPRKDFENCFVAPNASVVGDVDLVDMTTIWYGAVLRGDKSSIHVGGLSSVGDKTVINTVAKLSTGFPAKVVIGNYVVIEEGCSLTSCMVGDQCNIGRGSVVCEGAIMEKQSILLPGXXXTTGSLVPSRQIWGGNPAQYVGDVDSDSVANFKDEAERQFLLSEEHVNEFNPANMAFTHAED 236
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BLAST of mRNA_H-canaliculatus_F_contig1249.2104.1 vs. uniprot
Match: A0A3R6YSI6_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A3R6YSI6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 9.600e-22
Identity = 83/197 (42.13%), Postives = 109/197 (55.33%), Query Frame = 2 
Query:  701 SHGNGRHSDLKHRPVMNLHDDRGFTMSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVANVDTGFSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSEGDVAEVEAEAERRSALGELHADEFNPYGQAYLE 1291
            +H N   S  +HR +M L+D        ++VAP ASV+G+V I + S VWYG VIRGD NKV IG   ++ D+AVI+T +    G +                                        XXXXXXXXXXXXXXXXXXX  +LWAG+PAK+VR +SE +VA++  +A   + L E H+DEF PYG AYL+
Sbjct:    3 AHLNLLSSVSRHRQIMALYDKAPVIAHDSWVAPNASVIGDVEICNDSSVWYGVVIRGDLNKVSIGNRTNIQDRAVIHTSSTTTPGLAPGTSIGNNVTVGHGAILYSCTIENNVLVGMGSIVLDGALVXXXXXXXXXXXXXXXXXXXXXQLWAGSPAKYVRDVSEDEVADLVKQASEYTKLAETHSDEFLPYGTAYLD 199
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BLAST of mRNA_H-canaliculatus_F_contig1249.2104.1 vs. uniprot
Match: A0A2D4CA92_PYTIN (Uncharacterized protein n=3 Tax=Pythium TaxID=4797 RepID=A0A2D4CA92_PYTIN)

HSP 1 Score: 109 bits (272), Expect = 1.100e-21
Identity = 81/189 (42.86%), Postives = 107/189 (56.61%), Query Frame = 2 
Query:  731 KHRPVMNLHDDRGFTMSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVANVDTGFSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSEGDVAEVEAEAERRSALGELHADEFNPYGQAYLEAE 1297
            +HR VMNL+D R       +VAP A+VVG+V I + + +WY  VIRGD N+V+IG   +V D+ VI+T +N   G  A                                     XXXXXXXXXXXXXXXXXXXX   +LWAGNPAK++R +SE +V ++  +A     + + H+DEF PYG AYL+AE
Sbjct:  217 RHRQVMNLYDKRPVIAHDVWVAPNATVVGDVEICNDASIWYNVVIRGDLNQVRIGNRTNVQDRTVIHTASNSTPGLPAGTSIGNDVTIGHGCILYSCTIENNALIGMGSIILDGAXXXXXXXXXXXXXXXXXXXXPSGQLWAGNPAKYIRDISEDEVKDITKQATEYKGIAQTHSDEFLPYGTAYLDAE 405
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1249.2104.1 vs. uniprot
Match: A0A485KRQ9_9STRA (Aste57867_10750 protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485KRQ9_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.790e-21
Identity = 79/199 (39.70%), Postives = 106/199 (53.27%), Query Frame = 2 
Query:  707 GNGRHSDL--KHRPVMNLHDDRGFTMSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVANVDTGFSAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSEGDVAEVEAEAERRSALGELHADEFNPYGQAYLEAE 1297
            GN +H +   +HR VM L+D         +VAP ASV+G+V I + S VWYG VIRGD NKV IG   ++ D+ VI+T +    G +                                        XXXXXXXXXXXXXXX      +LWAG+PA++VR +SE +VA++  +A   + L + H+DEF PYG AYL+AE
Sbjct:   29 GNNQHREKFSRHRQVMALYDKVPSIAFDAWVAPNASVIGDVEICNDSSVWYGVVIRGDLNKVSIGNRTNIQDRTVIHTSSTATPGLAPGTSIGNDVTVGHGAILYSCTVENNVLVGMGSIVLDGALVXXXXXXXXXXXXXXXRRIPSGQLWAGSPAQYVRDVSEDEVADLVKQAAEYTKLAQTHSDEFLPYGTAYLDAE 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1249.2104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ29_ECTSI3.330e-7090.05Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S3GN43_9STRA9.660e-2745.50Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
W7TW63_9STRA2.520e-2550.75Trimeric LpxA n=2 Tax=Monodopsidaceae TaxID=425072... [more]
A0A7S3AQF6_9EUKA2.670e-2450.00Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A5A8CT95_CAFRO9.860e-2342.33Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
K3WLJ5_GLOUD1.140e-2242.33Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A835YZE2_9STRA8.600e-2234.55Trimeric LpxA-like protein n=1 Tax=Tribonema minus... [more]
A0A3R6YSI6_9STRA9.600e-2242.13Uncharacterized protein n=6 Tax=Aphanomyces TaxID=... [more]
A0A2D4CA92_PYTIN1.100e-2142.86Uncharacterized protein n=3 Tax=Pythium TaxID=4797... [more]
A0A485KRQ9_9STRA1.790e-2139.70Aste57867_10750 protein n=5 Tax=Aphanomyces TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1249contigH-canaliculatus_F_contig1249:5689..10440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.9
Seed ortholog evalue8e-57
Seed eggNOG ortholog2880.D7FJ29
GOsGO:0000003,GO:0001101,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005773,GO:0005774,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009791,GO:0009853,GO:0009987,GO:0010033,GO:0010228,GO:0016020,GO:0019866,GO:0022414,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033993,GO:0042221,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061458,GO:0070469,GO:0097305,GO:0098588,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0098805,GO:1901700,GO:1902494,GO:1990204
EggNOG free text desc.carnitine dehydratase activity
EggNOG OGs2QQV5@2759,COG0663@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncarbonic anhydrase
Ec32 orthologEc-07_004610.1
Exons4
Model size2168
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1249.2104.1prot_H-canaliculatus_F_contig1249.2104.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1249 6434..9578 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928964.05684-UTR-H-canaliculatus_F_contig1249:5688..64331622928964.05684-UTR-H-canaliculatus_F_contig1249:5688..6433Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1249 5689..6433 +
1696845632.1645603-UTR-H-canaliculatus_F_contig1249:5688..64331696845632.1645603-UTR-H-canaliculatus_F_contig1249:5688..6433Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1249 5689..6433 +
1622928964.1459596-UTR-H-canaliculatus_F_contig1249:9578..104401622928964.1459596-UTR-H-canaliculatus_F_contig1249:9578..10440Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1249 9579..10440 +
1696845632.2260053-UTR-H-canaliculatus_F_contig1249:9578..104401696845632.2260053-UTR-H-canaliculatus_F_contig1249:9578..10440Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1249 9579..10440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928964.072571-CDS-H-canaliculatus_F_contig1249:6433..65571622928964.072571-CDS-H-canaliculatus_F_contig1249:6433..6557Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1249 6434..6557 +
1696845632.182932-CDS-H-canaliculatus_F_contig1249:6433..65571696845632.182932-CDS-H-canaliculatus_F_contig1249:6433..6557Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1249 6434..6557 +
1622928964.1002696-CDS-H-canaliculatus_F_contig1249:7994..81601622928964.1002696-CDS-H-canaliculatus_F_contig1249:7994..8160Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1249 7995..8160 +
1696845632.1963081-CDS-H-canaliculatus_F_contig1249:7994..81601696845632.1963081-CDS-H-canaliculatus_F_contig1249:7994..8160Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1249 7995..8160 +
1622928964.119812-CDS-H-canaliculatus_F_contig1249:8735..88701622928964.119812-CDS-H-canaliculatus_F_contig1249:8735..8870Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1249 8736..8870 +
1696845632.2086515-CDS-H-canaliculatus_F_contig1249:8735..88701696845632.2086515-CDS-H-canaliculatus_F_contig1249:8735..8870Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1249 8736..8870 +
1622928964.132757-CDS-H-canaliculatus_F_contig1249:9442..95781622928964.132757-CDS-H-canaliculatus_F_contig1249:9442..9578Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1249 9443..9578 +
1696845632.2177117-CDS-H-canaliculatus_F_contig1249:9442..95781696845632.2177117-CDS-H-canaliculatus_F_contig1249:9442..9578Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1249 9443..9578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1249.2104.1

>prot_H-canaliculatus_F_contig1249.2104.1 ID=prot_H-canaliculatus_F_contig1249.2104.1|Name=mRNA_H-canaliculatus_F_contig1249.2104.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=187bp
MNLHDDRGFTMSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIG
AHVHVGDKAVINTVANVDTGFSAEVAIESWVVIDPGAVLTSCMVGNRCKI
GAGAVVAEGSVMDAGAQIAAGTVVPPGCLVPKNELWAGNPAKFVRKLSEG
DVAEVEAEAERRSALGELHADEFNPYGQAYLEAEDK*
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mRNA from alignment at H-canaliculatus_F_contig1249:5689..10440+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1249.2104.1 ID=mRNA_H-canaliculatus_F_contig1249.2104.1|Name=mRNA_H-canaliculatus_F_contig1249.2104.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4752bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1249:5689..10440+ (Hapterophycus canaliculatus Oshoro5f female)
GTAAAAGCATAATAGGGTCATCGCGGACATGCCCCTATCCGCCGCACTGC
CCTGAGGTCTGAAGAGCAAACGTACACAGGCGGGAGGGAGAGCGAGATTT
GCGGGCGTCGCAGTGCCGAGGTGTCAAAAATTGGAGTAGTCAATCATATC
CGAAGTAGGAGGTTAAACCACGGACGGTTTGACAGATTCGTGTCCGAGTA
CGTCCCCACATTGTCCCCACACGTACAAGTAGTGAAAGAAAATGTCACTT
CTCCGCCGAACTACTCCGACCATCTCACCTCTGTCCGGTACACACTTTCG
AAGCTACAAGTAGGAGTCTTCTATCAAGTAGCCCCATGTACAGTGTAGTA
CAAGTAGGGTCTGTATGACCCGTGTTTGTGGCGTTTCGAAGCCTTTCGGT
TGCGCAACAATTGATTCGAGCTTGGAATGTAAGCTTTTGTCGCAACGGTG
CACCGGGTTCCGGCCGCAGAGTGTTTCGAATCGGCACGAAATCCGACTAC
TGCTGTAGCTGTTTACCATGGGTTCACCGAATGTGAATCACCGTTCTGTG
CGTGGATCCTCTTGACTACCGCTCGAAAACGATGCCTCCGTGCGCTCTCC
TAGCCATGTGCGGCCGATCGCTAGCTAACCCCGCTCGCCATGATCTAACA
TTTACTCGGGTTATGGCCCCGTCCTTCAACTCTTATCGTGGTTGTGGCGT
TCGCATGGCAACGGCCGCCACTCAGACCTCAAGCACCGCCCGGTGATGAA
CCTGCACGATGATCGTGGGTTCACCATGTCAACAACCTTCGTGGCGCCGT
GCGCATCCGTCGTTGGAAACGTCAGGATCATCGATCACTCCTGCGTATGG
TATGGAGCCGTTATTCGAGGTAAGTCACGGTCGGCGTGGAGCTCTCCGTA
CGTGTGCCACCGGGACGAACGGAAAATAAGCGAGGAATCCAGGAAAGACA
AGTAAAGGGAGGGGGGTAAGATGCAACAACCCTTTGGCAGTAGCGTTCGA
CTTGAGGGGGAAAGGTTCTTCCGTGGATATGAGTATCTCGGAAGACGAGA
GCGGTTGATCTTGAGAGCCGGAATGGTGCGAAGGGTGTGGTTGACATATT
CCTCCGTTGATCCTCATCAAATGGTGTGCAAGATCAACGAAAAGCCGCAA
TTCCTCTGAACCCTTGGACGCCTTTAGGTTGTCAAAAGGATCTTTTCCGG
GTATCATTTTCGCCCCCTTTTTTCTTACGTAGCCTGGTTTTGAGGTCTCC
TCATTGGGGGGCTGACAATAAACAAGCCCGAAGTAACACGCAAGGAGTTG
TACAGCAGTATCGAAGACGCAGGTGCGACCCGCACACACATTTACACAGG
CGCCTCCGGAATGCATGGGCCTTGTGAAGAGTAATCTAAGATCTATATAT
GCTTGTGTGCCCGACGGCATCGCACTGGCCAGGAAAAAGGGGCGCAAGAG
AAGTACAAAGGTCCAAGCACCGGCTACATCCCTCAAACCTTACTCAAATA
ACTTAGGTGATCATTTGAAGGGATCAGTCTGGGCACATGTTTGATTTAGA
GGACGTGGAAGACAGGGGAGAAACAAGGTTACACACGCAACGAGCTCCAA
GAGCGAAAGCGTGGACACTGTGCGGTCGTGCTTGATCAAAGGAAAGGCAA
TCAGCTGGTCGAGGGGAGATATTTCGACCTCGGACGCTGGCATAACTTGT
ACCGCCGTACTTGTGCTGTACTTATCTCTTTTTTTTAACTGCGGCGGATT
GTTCCGTGCAAAAACTGAAGCGCTTTTATTCACGCCGCTGGTCTATCGGG
GGCCAGTCGGGAGTCGAATAGCCTAGTTGTCAGGGGGTTAACCTTGATGT
GGGAGAGTGCGTCGGCAGCGCACGTCACGAATGTTTATTTCCATTACAGC
ATGTTCCAGGCACAGCGTCTAGAGAACAGCGTTTGCTGAGCATGCCGGAT
GTTAACGACGACTCCATAATTTTGAAAGGGTTTCTGACGTACGCCTTTGG
GCTGAGTGTGCTACCATCAAATCCTCTGTACTTGCGTTGCCCAGTGTTTC
ACCCCCCACACACTCCGCCTTTCCCCCTCCAGAGCTCAAAGGAATGACAT
CACTCTGTTTGCACGGGATTTGCTCCTTAGGGGGTTTCATTGGTATTACA
GTTTCCTCCATACGTTGGCGTTTACTCCGTGGGACCATTATTTCGGAACG
CAAAAGCAGTCGCGTCCTCGATATGTCTTGAGCCGTGTATCGTACTCTCG
GGGACTGTCGACTCTGTTGTGATTGTTCACGCGTTTTAACACCTCAAAAT
GAACAGGTGACAAGAACAAGGTAAAGATCGGCGCCCACGTGCACGTCGGC
GACAAAGCTGTCATCAACACCGTGGCGAACGTCGACACGGGGTTCTCCGC
GGAGGTGGCGATCGAGTCCTGGGTCGTCATCGACCCCGGAGCGGTCCTGA
CGTCCTGCATGGTCGGCAACAGGTGAGTGAAGATGAGCCCCAGAGTCGGT
TGGATACCGCCGTGGTTTCGTGTGCGCATCCAACGCGTGTTTATGCGGTT
GCCACCATGGTGCATGAGTGCACATGTAGTGCAGTTGCAGCTTTTTCCCC
GCCATATATCCAAGACGCAAGACTTGCTGACGGCAGCAATTTAGGAGAGG
AACTGCTATGCCGCTGAGGAACGTGAGCAAATACGCTAGCTCAGCCTCAA
CTTTCCATGGCAGACGCACAACACAAAACGTCACTGTTCCCAGCAGTCGT
GAATAGAGGGACAAATGCGACACACAGCGTCATCACTGCTGTTTTGCTGA
CGGCAAGTTCGCCTGGTCTGCGTCGCCGTAATGGGGGAGTTGAGCAGGCA
CCACAGCCGCAAGTGGTCTGATCCAGGCGCCGTCGAATCGTTTGTAGAAG
GACAGAGTAACATTAATGAAGACCCCAAAACAAAGAAGGCGGGAGCCTGC
GCGCGGTAGTTCGTTGTACCCTTCCCACATGTGTATGTCTACGATGAGCA
TGTTTGAGTCTGTTCGACATTTTGTAAACGACGTCTTCGTCTTGCAGGTG
CAAAATCGGCGCAGGTGCGGTGGTCGCCGAGGGCTCAGTGATGGACGCCG
GGGCACAGATTGCCGCGGGAACGGTGGTGCCTCCCGGGTGCCTCGTGCCC
AAGAATGAGCTGTGGGCGGGCAATCCTGCCAAGTGAGAGTTGCCCCTGCT
GTAGACACGCAGATGATCGAGACAGAAAGAGAACGAGAGAGAAGAAAATA
GGTAGACAGACGGACAGATACCGGCGGATCGAAGGCCGGGTGCAAACGGA
AGGGTGAGGGGGTGAAGGACAAAACGAAGAGGATGGATTACGGCGAAAGT
TTTTTTTAGAGATGTGTTCGAGAGAGACTGGAATTGTGGCATGTACTATA
TAACGCTTGTACAAGTATCATGACGGCTTTCTGCTGCTGCTCGTCTTCAA
TTTGAATGATGCGTCGTTGATTTCTCTGCCACCCTTTTTGATCGGCGATT
GTCTATCCGTTGCAGACCCTGAAAATGCGGAAACCTGCAGTTTGAACTGA
ATTGTCTACGTTTGAAGCCCCGCACACAGACAGCACTTGTCACTCCAGCC
GCTTGGTTTCGACCAAAGCTGCCAACATCAAACTCAACTCACTATATGCT
GCAAAGTGAGCAGGACATGTTTCAACCCCATCGCTCCGCTCATCATCCAA
TGCTTTCGGTCGTGTACCTCTCTTCGTGTCTCCGCCTTATGTCTTGTCCT
TCAGGTTCGTGCGCAAGCTTAGCGAGGGGGACGTGGCAGAGGTGGAAGCA
GAGGCGGAGCGAAGGAGTGCGCTGGGAGAGCTGCACGCCGACGAGTTTAA
CCCATACGGCCAAGCGTACCTAGAGGCGGAAGACAAGTAATTCATTTATC
GGCCGATTTCGTGCCGATCAAACCGCGCACCATATGTGTGAAGGAGGGAG
ACGTACAAATAGAATAGGTGCAGTTTAGCTCTCTATTTTCGTACTCTGCT
ACTGCGGCACTGCTGATCTCTGCCCTGCTACAAGTGCTGATCGATGGAAG
GGGGTCTGCTGCCCACCGTGATGTTGCTTCGTCCGCCGATCTTGTTGATT
GTTGCGTAACAGGGGTGGAGGACAGGAGGGCGGGGGTGGGAGAGGGCCAA
ATATCTTGTGCTTGTTTTATAAAATATCTTGTGCTTCACCACCGCCGCTG
CACCTCGTAAACCTCCAATCGGACTAGGGACACACAAGAGATTGCCCTCG
TGGTGACACGTTGCGGGCTGTTCTCTTTGGAGGCACGAAGGTAGACTGGT
ACAGCTGTATTGCCGCGTCAACGAAGCACCGGCTGCTCTAGGTTGCAGAG
AGTAGATGCTGTTCACTTCTGTGTCCATCGCGAGGGGATGACGCAACCTT
GGAGTATCTCCCTCTATCTTAATAACGGGCGCTAGCGATGTGCGAGCAAT
TTTATCATCGCCCGGAGAGAGAGGCATGTTCTGAGCGGCGAAAAATACGA
TCACAGATCAAAAGGGCCACGCGGTTTACTGCCTGCTGTGACGTTCGAGG
TGAAGCCTGCAAAGTTTATGAGCGACGTTGCAGGAAGGAGCCAAATTATT
GTATGCACCCACATGGTTGCAAATAAGAAGGAGCGGAACGAAAGAGTGAA
AAAAAGAAATCGTGAAAAAAACGCCCATAACAGCGCTTTTTGTAAAAGTC
TGATCTTGGGAGCACGAGTTTTAGCTACTGCTGTAAACAACAAGGAATGT
TT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1249:5689..10440+

>mRNA_H-canaliculatus_F_contig1249.2104.1 ID=mRNA_H-canaliculatus_F_contig1249.2104.1|Name=mRNA_H-canaliculatus_F_contig1249.2104.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1122bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1249:5689..10440+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAACCTGCACGATGATCGTGGGTTCACCATGTCAACAACCTTCGTGGC
GCCGTGCGCATCCGTCGTTGGAAACGTCAGGATCATCGATCACTCCTGCG
TATGGTATGGAGCCGTTATTCGAGATGAACCTGCACGATGATCGTGGGTT
CACCATGTCAACAACCTTCGTGGCGCCGTGCGCATCCGTCGTTGGAAACG
TCAGGATCATCGATCACTCCTGCGTATGGTATGGAGCCGTTATTCGAGGT
GACAAGAACAAGGTAAAGATCGGCGCCCACGTGCACGTCGGCGACAAAGC
TGTCATCAACACCGTGGCGAACGTCGACACGGGGTTCTCCGCGGAGGTGG
CGATCGAGTCCTGGGTCGTCATCGACCCCGGAGCGGTCCTGACGTCCTGC
ATGGTCGGCAACAGGTGACAAGAACAAGGTAAAGATCGGCGCCCACGTGC
ACGTCGGCGACAAAGCTGTCATCAACACCGTGGCGAACGTCGACACGGGG
TTCTCCGCGGAGGTGGCGATCGAGTCCTGGGTCGTCATCGACCCCGGAGC
GGTCCTGACGTCCTGCATGGTCGGCAACAGGTGCAAAATCGGCGCAGGTG
CGGTGGTCGCCGAGGGCTCAGTGATGGACGCCGGGGCACAGATTGCCGCG
GGAACGGTGGTGCCTCCCGGGTGCCTCGTGCCCAAGAATGAGCTGTGGGC
GGGCAATCCTGCCAAGTGCAAAATCGGCGCAGGTGCGGTGGTCGCCGAGG
GCTCAGTGATGGACGCCGGGGCACAGATTGCCGCGGGAACGGTGGTGCCT
CCCGGGTGCCTCGTGCCCAAGAATGAGCTGTGGGCGGGCAATCCTGCCAA
GTTCGTGCGCAAGCTTAGCGAGGGGGACGTGGCAGAGGTGGAAGCAGAGG
CGGAGCGAAGGAGTGCGCTGGGAGAGCTGCACGCCGACGAGTTTAACCCA
TACGGCCAAGCGTACCTAGAGGCGGAAGACAAGTAAGTTCGTGCGCAAGC
TTAGCGAGGGGGACGTGGCAGAGGTGGAAGCAGAGGCGGAGCGAAGGAGT
GCGCTGGGAGAGCTGCACGCCGACGAGTTTAACCCATACGGCCAAGCGTA
CCTAGAGGCGGAAGACAAGTAA
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