mRNA_H-canaliculatus_F_contig1249.2103.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1249.2103.1
Unique NamemRNA_H-canaliculatus_F_contig1249.2103.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1249.2103.1 vs. uniprot
Match: D7FJ28_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ28_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 9.840e-12
Identity = 49/75 (65.33%), Postives = 55/75 (73.33%), Query Frame = 3 
Query:   96 MGDLKDQMAKKLQAAARGYITRKTGGGGKAGGKXXXXXXXXXXXXX------SDDMNARIIQAAYRKYKAHSKQH 302
            MGD KDQMA K+QAAARGYI RKTG GGK  GK     XXXXXXXX      S+DMNA IIQAA++KYK + K+H
Sbjct:    1 MGDFKDQMAAKVQAAARGYIQRKTGMGGKTAGKKHKAGXXXXXXXXXXXXXKSEDMNAMIIQAAFKKYKEYQKKH 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1249.2103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ28_ECTSI9.840e-1265.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1249contigH-canaliculatus_F_contig1249:715..5182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIQ motif protein
Ec32 orthologEc-07_004620.1
Exons4
Model size2217
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1249.2103.1prot_H-canaliculatus_F_contig1249.2103.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1249 2627..4499 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.8714623-UTR-H-canaliculatus_F_contig1249:714..26261622928963.8714623-UTR-H-canaliculatus_F_contig1249:714..2626Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1249 715..2626 -
1696845632.0953865-UTR-H-canaliculatus_F_contig1249:714..26261696845632.0953865-UTR-H-canaliculatus_F_contig1249:714..2626Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1249 715..2626 -
1622928963.9489298-UTR-H-canaliculatus_F_contig1249:4499..45291622928963.9489298-UTR-H-canaliculatus_F_contig1249:4499..4529Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1249 4500..4529 -
1696845632.1330817-UTR-H-canaliculatus_F_contig1249:4499..45291696845632.1330817-UTR-H-canaliculatus_F_contig1249:4499..4529Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1249 4500..4529 -
1622928963.9835577-UTR-H-canaliculatus_F_contig1249:5117..51821622928963.9835577-UTR-H-canaliculatus_F_contig1249:5117..5182Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1249 5118..5182 -
1696845632.1452224-UTR-H-canaliculatus_F_contig1249:5117..51821696845632.1452224-UTR-H-canaliculatus_F_contig1249:5117..5182Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1249 5118..5182 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.8847494-CDS-H-canaliculatus_F_contig1249:2626..26471622928963.8847494-CDS-H-canaliculatus_F_contig1249:2626..2647Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1249 2627..2647 -
1696845632.1040812-CDS-H-canaliculatus_F_contig1249:2626..26471696845632.1040812-CDS-H-canaliculatus_F_contig1249:2626..2647Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1249 2627..2647 -
1622928963.900059-CDS-H-canaliculatus_F_contig1249:3384..35051622928963.900059-CDS-H-canaliculatus_F_contig1249:3384..3505Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1249 3385..3505 -
1696845632.1128545-CDS-H-canaliculatus_F_contig1249:3384..35051696845632.1128545-CDS-H-canaliculatus_F_contig1249:3384..3505Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1249 3385..3505 -
1622928963.9339857-CDS-H-canaliculatus_F_contig1249:4431..44991622928963.9339857-CDS-H-canaliculatus_F_contig1249:4431..4499Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1249 4432..4499 -
1696845632.1228566-CDS-H-canaliculatus_F_contig1249:4431..44991696845632.1228566-CDS-H-canaliculatus_F_contig1249:4431..4499Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1249 4432..4499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1249.2103.1

>prot_H-canaliculatus_F_contig1249.2103.1 ID=prot_H-canaliculatus_F_contig1249.2103.1|Name=mRNA_H-canaliculatus_F_contig1249.2103.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=70bp
MGDLKDQMAKKLQAAARGYITRKTGGGGKAGGKKKTGGGHKKGGKKSDDM
NARIIQAAYRKYKAHSKQH*
back to top

mRNA from alignment at H-canaliculatus_F_contig1249:715..5182-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1249.2103.1 ID=mRNA_H-canaliculatus_F_contig1249.2103.1|Name=mRNA_H-canaliculatus_F_contig1249.2103.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4468bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1249:715..5182- (Hapterophycus canaliculatus Oshoro5f female)
CACCCTCGAGCCTTGCCACCCATCTCAGTTCTACCTCCTTCGCCGCGACG
CCCGCGCTATCCAAGGTATGTTAGATCTTGGGAGACCTTCTGTTTCTCTG
TTTAGGCGGAGAGGGGGATAGAGCGAAACCCCAAGGTAGAGTCTATGGTC
GAAAGCCGCGCCCGCTCTAAATTGAAAATGATATTTCGTACAAGTAAACA
AACTTCGGTGAATGTTCAGGTCCACTAGATCCCAACCCTCCAGCCCTCGC
AACTCTCTCGTATCAAGTCAACCGTCTCGAGCGCCGCTCGTTATGCCACC
TACTCACGAGGTGTAGTATGCCACTGCTGTTGACCGACAGGTTTCCCCGA
ACAGAGTACACAACCAGAGTACAACAACATGCGTCTTCTCTCTCACGCAA
TCTCGCCCACACAAAAACTAATTTTTCCGCCAAATATTTGCGCGAAAGTG
AAATACTACAAATGACGTGTAACCAAACCTCCAGATCTTGGGAGATCCCG
GGAAACGAATTTCTCTCCTTTAACCATCTGGGGCCTGGGTGGGCAGCTTT
GGAGACAGTTGTCTTGTCCGCTTGCTGGCGGCGGTACTCCAGCTTGTCCA
CTAATCTTCCGTTCGCTTCCTCGTTTTTTTGTTTTCTTTTCTCTGCCGTA
CAGAGTCCTTCCGCACCAAGCAAACCCTCAACCATGGGCGACTTGAAGGA
TCAAATGGCGAAGAAGCTCCAGGCGGCGGCTCGAGGTTACATCACGAGGA
AGTGAGTCAGCGGATTTCTAGTGTGTTCTCGAACCCTGTCTTTATTGAAG
CCGTCTTGTGCCGGTTCGCGCTTGGATATTTTGCTTGCCAGTCTGTCTTG
AAAAGCGCCGCTTGACCGCCGCACCACGGAAAAACGTCAAATCATGAACA
CCAATTCAAAATCGTGGCCAAATCGTATGTGCGGAAGACCACCGGATGAA
GAATCATCCGTTATGAAGGCCCCTGTTCTGTCGGTCCGTTACTGTTTGCG
TTGGTTTCCTTCTCATTGGTGGGGCCAACATGTTTCTTCAAGTCGATTTG
TCTGTTGCGATAGCCCACACGTGATTCAGGCAACGGGAAACTGCCGTGTC
GAGGCAAGAATTCCAAGTGTCGCTCGTTTCGTTCGTGACGCAGCCATTAG
TGTTCTGAATAGGTTAGAGTCGGGATCCACGTCGAAGCGATAAGTGTCCC
GGACGCGATTTCATTGAATTTGTCCGGGAATACGTCGGAGTTCCATGGGG
CTCCACACTGGATGACTTGGTGCTTCGGAACGTGGGTAGAAGAAGCGAAG
ATCCTACACTAAAGCGTGCTTTAAAATATCTCAAATCTTGGTGTCGGACG
AACGGCAAGCCTTTCGTTTCCAGGCTTCATATTCATCCGTCCTGTTTCTG
TGACGAACTTGATTGAGCTCGTCCGAGAATATGCACCCGTTTACGATATT
TTCAGAGGTCTTGTTTTCGATGTTGCCAAGAATTTTTTCCATCGCGACTT
GCTCCAAAGGAAATACAAACACGAACTCGTCGAATCAATCTTTGAAGGGT
TATTCTCGGCAGAGATTGTGTTTGATCACAACTATATATTTAACGCTCTC
CGATGATCACACCGGCCGAAGTAGACCCCCGATGAAATATTTTGTATTTT
TTGCTGATCCTCCCGTTTTGCACCTAGGACTGGGGGCGGAGGCAAGGCGG
GCGGCAAGAAGAAGACTGGTGGAGGACACAAGAAGGGTGGCAAGAAGAGT
GACGACATGAACGCCAGGATCATCCAGGCAGCCTACAGGAAGTACAAGGT
AGGACAAAACCCGCAACAGCTTCCACAGCCACGCCATGACGGGGGGACGC
TGACAATTTGGACCGTGCCGCCCCTAAATAGTGTGCACATTTTGTTTCCG
CGGGTTTGAAAACGGGCCATGATGAGGCGAAAACAAGTGCTCACATGAGA
CAGAGGTGCTAAGCGATGTGACGACACGGAGGAAACCCTTGAATCGACTG
CACATTCGTCGAACACGAAACAAAGAATATGAATCTAAACTCTTGAGAAA
GTAAACAGGCACACTTCAGACTTGTGTGGTGAATCTGGCGCTGCTTAGAG
AAAGAATATGGACGGACGGCGTTCAAAGTTCCGCTCGTACCACCTCGGGG
AAACACCTTCATCTGATGAGGCATATTCATTTACTTGAACCGGAGTGATG
TTATCATCGTCTACAAACGTCAGCAGTTGAAGTCTAACAGGTTTCTGTGT
GGCTTCTACTGTATCAGGGGACTGTTGTGACCTCATCGCTCATCGTAAAA
CCCTCAGACCAGTGACCCTACAAGCAGCCTATCATCAGCCACCATGCGGT
TAATTACTTGTGAATCTCCTCGATCATAGTAATACAGGAACTCATGAACC
ACGTCGATATAGTGACTCACCGTGGCTCATGGCGTGAAATATGTTTCAAA
CTCATGATCCGCGGCCCGCAGGACACTGACCACGTCGTGTCATCCGCGAT
TGAATCCAACGTCTCATCCGTGGCTTTGCGAACAGGCCCACTCGAAGCAG
CACTGAGGATCCCAGCGACGGTGTGTACGCCGTCGGAAACAGGCGGCGAA
TGTTCGCCATCAGTGGATGACCTTGGGCGGTCGAATTCTGTAATCTTCTT
CAGGCTGCCTAAAGAGCAGTACACGTGCGTCGTTTATTCATTTTTGCTCT
CCCACCAGCACACGTACGATTGCTAGGTCCGGATTATCGTAACGTACTCG
TGTAGTCTTTTTCTGCGTGTGATAGAACAGGCATCTGTACGAGCTCCGCG
CAAACACGGAGAAGTCTGCGCCTTTCCGCTGGAATGACGTCCCGATTGCC
CCTTTCTCGGGATTCATTTGTTTTCCCTGTCGTGATTTGTTGCTTGTTTT
GTTGATTCCGTCGAGAGCATTTCTGTCGTATTCTTTGTACTCTGTACCCG
CGCTAGTCCCGGTAGGGCGCTTTTTCTTTGTTGCACGCAGCTCGCACGTG
CCTCTAAGGAGAGGACGTTCGTTAGTCGGCCCCTTGGATCCGCATTAGGA
GAGCATTAGGAGGTGCAGGGTTGATGAGAGCAGGCCCGCGCACATTTCGT
TAAAGGTTGTGCGAGCGCATAATGTCGTGCACTTCTCTTGCCTCGTGCTA
GCCATTCTTGAACTTTGTTGCAGTTGTTCCTTCCCTTTTTTTCGTTTTTA
CTCACCACCCAAACCCGTAGTTGAAGGGTGAACCAATCGGAGTGCCCTGT
GTAGTACATGTCCAGCCACACTCAAGAGCTTCCGCCATACGCGGACAGGG
CTTTTCGATAAGGTTTAAAACAGAGTTTACATGTAGCACAGTCTGCAAAT
ATGTGTTCCCTCGACGTGTTGTTTTTAGCATTAGCTACGGTGCACTGGGT
AGACGGGCGACAAAGAGTGTTGATCTCCATTCCGGGTTGTTTGTGTTGCG
TCAGGCACGCAAGGCCGCTGCTGGCCTTGGGTTTTGCGTTACTTGGCAGC
CTTGGGATGTAGGGCAAGGGCATCTCCTTGCTTCGTTGTGTGTCCCTCGT
GGTGTGACTCAGGAAGGTCCCGTTGAAATACGTTCATCCAAACCATTATT
TTGTGTACTGCTCGACGTTTTCTGGGGTACGCGCTGCCCTTCCTCGTCAA
CCGCAACTGAAATTCCGGAGGGCACGGATTTTTTGCTGTTTCTTATAAAT
GCGCTGGTTAATTGTGTCGGGTGACTGTTGGCCGTCGTGTGACATCGCTG
CCCGTGACGCCCTCTCAACTTCTCCATCACGTGCAATACGTAGGAGACGA
AGGGTAGGTACCCCACGAATTAAACATCGTAAACGTGCCTAGACGTGGTC
AAAGCGGGTCTCTAGAAGCAGATGACTTGTCGACGTCTCGTGGTACGCAG
ATATGAGATGCTATCTACGGGTATAGTGTATCTCTGAAACATGGTTGCTA
CGGGATTGCAACGAGCATTTTCACCCTTCGAACACACGATCTGATACAGG
GAGCAGAGTAACCATTCTTAACGTAACCCTCTGGTCTCCTTCTGGGTGAG
CTGTTGACGGAAGAGACTATCGTATATGACACTATATAATGAACCGATTT
TCACATCTGGGCCACTCCGCAACGAGAACGATTCCACAACTCAGTGACAC
GTTTTGTAGCTCCGGAACCAATGCCGCCCTGTTCGGGATTGCTACGCCTA
TTGCTGTAGAGTACTTCGGGTTTGAAAATCTGTGCAGGGGGTGCGTTATT
TTGTGTCATATACGTTAGTTCACGAGCGACATTTCACGGGAGTGCCGTCT
CACAAGCTCTTTACACCGTGCAGAATGCCTCACATACAAAATCGCCGGCG
GCCAATTTCACGAGGCAGGTGGACGTGCACAGAATTAACGACTTGCTTAT
TGTGCTTCGACGCAGGGGAGGCACGGACGCATGGGGTAAATACCGAGTTA
CCTATTTTTCAATTCCCA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1249:715..5182-

>mRNA_H-canaliculatus_F_contig1249.2103.1 ID=mRNA_H-canaliculatus_F_contig1249.2103.1|Name=mRNA_H-canaliculatus_F_contig1249.2103.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=420bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1249:715..5182- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCGACTTGAAGGATCAAATGGCGAAGAAGCTCCAGGCGGCGGCTCG
AGGTTACATCACGAGGAAATGGGCGACTTGAAGGATCAAATGGCGAAGAA
GCTCCAGGCGGCGGCTCGAGGTTACATCACGAGGAAGACTGGGGGCGGAG
GCAAGGCGGGCGGCAAGAAGAAGACTGGTGGAGGACACAAGAAGGGTGGC
AAGAAGAGTGACGACATGAACGCCAGGATCATCCAGGCAGCCTACAGGAA
GTACAAGGACTGGGGGCGGAGGCAAGGCGGGCGGCAAGAAGAAGACTGGT
GGAGGACACAAGAAGGGTGGCAAGAAGAGTGACGACATGAACGCCAGGAT
CATCCAGGCAGCCTACAGGAAGTACAAGGCCCACTCGAAGCAGCACTGAG
CCCACTCGAAGCAGCACTGA
back to top