mRNA_H-canaliculatus_F_contig12484.2102.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12484.2102.1
Unique NamemRNA_H-canaliculatus_F_contig12484.2102.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12484.2102.1 vs. uniprot
Match: D7FU41_ECTSI (Pre-mRNA-splicing factor SLU7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU41_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 2.770e-38
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 1 
Query:    7 WQGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPEANAEDLVFAGDNFIR 222
            +QGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPE  AEDLVFAGDNFIR
Sbjct:  298 FQGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPETAAEDLVFAGDNFIR 369
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BLAST of mRNA_H-canaliculatus_F_contig12484.2102.1 vs. uniprot
Match: A0A836CLD5_9STRA (Pre-mRNA-splicing factor SLU7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLD5_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.350e-33
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:    7 WQGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPEANAEDLVFAGDNFIR 222
            +QGRVARQGGLGGAQM TTVRNLRIREDRAKYLYNLDP+SAYYDPKTRAMR+NP P AN E+L +AGDNF+R
Sbjct:  261 FQGRVARQGGLGGAQMATTVRNLRIREDRAKYLYNLDPDSAYYDPKTRAMRENPNPSANPEELAYAGDNFMR 332
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BLAST of mRNA_H-canaliculatus_F_contig12484.2102.1 vs. uniprot
Match: A0A6G0RVC6_9STRA (Pre-mRNA-splicing factor SLU7 n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RVC6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.360e-32
Identity = 55/69 (79.71%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:   16 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPEANAEDLVFAGDNFIR 222
            RVARQGG+GGAQMKTTVRNLRIRED AKYL NL+PNSAYYDPKTR+MRDNP PE N ED  + GDN  R
Sbjct:    5 RVARQGGVGGAQMKTTVRNLRIREDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTYVGDNIAR 73
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BLAST of mRNA_H-canaliculatus_F_contig12484.2102.1 vs. uniprot
Match: A0A7S2MS38_9STRA (Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MS38_9STRA)

HSP 1 Score: 121 bits (304), Expect = 6.760e-32
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 1 
Query:    1 LAWQGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPEANAEDLVFAGDNFIR 222
            + +Q R+ARQGG+GGAQMKTTVRNLRIRED AKYL NLDPNSAYYDPKTR+MRDNP+P  N E++ +AGDNF R
Sbjct:  161 IDFQKRIARQGGIGGAQMKTTVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPLPNENPEEVQYAGDNFSR 234
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BLAST of mRNA_H-canaliculatus_F_contig12484.2102.1 vs. uniprot
Match: A0A6A3U154_9STRA (Pre-mRNA-splicing factor SLU7 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U154_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.620e-31
Identity = 54/69 (78.26%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:   16 RVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPEANAEDLVFAGDNFIR 222
            RVARQGG+GGAQMKTTVRNLRIR+D AKYL NL+PNSAYYDPKTR+MRDNP PE N ED  + GDN  R
Sbjct:    5 RVARQGGVGGAQMKTTVRNLRIRDDTAKYLRNLNPNSAYYDPKTRSMRDNPNPELNPEDTTYVGDNIAR 73
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BLAST of mRNA_H-canaliculatus_F_contig12484.2102.1 vs. uniprot
Match: A0A7S1UIW3_9STRA (Pre-mRNA-splicing factor SLU7 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIW3_9STRA)

HSP 1 Score: 121 bits (303), Expect = 4.730e-31
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    7 WQGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPEANAEDLVFAGDNFIR 222
            +QGRVARQGG+GGAQM TTVRNLR+RED AKYL NLDPNSAYYDPK+RAMRDNP+P  +   LV+AGDNF+R
Sbjct:   71 FQGRVARQGGVGGAQMFTTVRNLRVREDTAKYLLNLDPNSAYYDPKSRAMRDNPLPHMDPNKLVYAGDNFVR 142
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BLAST of mRNA_H-canaliculatus_F_contig12484.2102.1 vs. uniprot
Match: A0A7S2V1R9_9STRA (Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1R9_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.900e-31
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:    7 WQGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPEANAEDLVFAGDNFIR 222
            +QGRVARQGGLGGAQMKTTVRNLRIRED AKYL NLDPNSA+YDPKTR+MR NP P  +AE+ ++AGDN++R
Sbjct:  254 FQGRVARQGGLGGAQMKTTVRNLRIREDTAKYLRNLDPNSAFYDPKTRSMRANPTPHLDAENTLYAGDNWVR 325
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BLAST of mRNA_H-canaliculatus_F_contig12484.2102.1 vs. uniprot
Match: W7TVH6_9STRA (Pre-mRNA-splicing factor SLU7 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVH6_9STRA)

HSP 1 Score: 122 bits (306), Expect = 6.990e-31
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:    7 WQGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPEANAEDLVFAGDNFIR 222
            +QGRVARQGG+GGAQMK +VRNLRIRED AKYL NLDPNSAYYDPKTRAMRDNP+P  + E+L +AGDN++R
Sbjct:  241 FQGRVARQGGVGGAQMKVSVRNLRIREDTAKYLRNLDPNSAYYDPKTRAMRDNPLPGTHPEELAYAGDNYVR 312
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12484.2102.1 vs. uniprot
Match: A0A7S2SN22_9STRA (Pre-mRNA-splicing factor SLU7 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN22_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.280e-30
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    7 WQGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPEANAEDLVFAGDNFIR 222
            +Q R+ARQGG+GGAQMKTTVRNLRIRED AKYL NLDPNSAYYDPKTR+MRDNP+P  N ED+ FAGDN+ R
Sbjct:  311 FQKRIARQGGVGGAQMKTTVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPLPAENPEDIPFAGDNYQR 382
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12484.2102.1 vs. uniprot
Match: A0A7R9U7Z6_9STRA (Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7Z6_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.550e-30
Identity = 55/72 (76.39%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    7 WQGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTRAMRDNPMPEANAEDLVFAGDNFIR 222
            +QGRVARQGGLGGAQM TTVRNLR+RED+AKYL NLDPNSAYYDPK+R+MR+NP+P  +    V+AGDNFIR
Sbjct:  259 FQGRVARQGGLGGAQMATTVRNLRLREDKAKYLLNLDPNSAYYDPKSRSMRENPLPHLDPAQAVYAGDNFIR 330
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12484.2102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU41_ECTSI2.770e-3895.83Pre-mRNA-splicing factor SLU7 n=2 Tax=Ectocarpus T... [more]
A0A836CLD5_9STRA1.350e-3384.72Pre-mRNA-splicing factor SLU7 n=1 Tax=Tribonema mi... [more]
A0A6G0RVC6_9STRA1.360e-3279.71Pre-mRNA-splicing factor SLU7 n=2 Tax=Phytophthora... [more]
A0A7S2MS38_9STRA6.760e-3275.68Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=D... [more]
A0A6A3U154_9STRA1.620e-3178.26Pre-mRNA-splicing factor SLU7 n=3 Tax=Phytophthora... [more]
A0A7S1UIW3_9STRA4.730e-3177.78Pre-mRNA-splicing factor SLU7 n=1 Tax=Phaeomonas p... [more]
A0A7S2V1R9_9STRA4.900e-3177.78Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=F... [more]
W7TVH6_9STRA6.990e-3177.78Pre-mRNA-splicing factor SLU7 n=2 Tax=Monodopsidac... [more]
A0A7S2SN22_9STRA1.280e-3079.17Pre-mRNA-splicing factor SLU7 n=2 Tax=Rhizochromul... [more]
A0A7R9U7Z6_9STRA3.550e-3076.39Pre-mRNA-splicing factor SLU7 (Fragment) n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12484contigH-canaliculatus_F_contig12484:275..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue2.1e-32
Seed eggNOG ortholog2880.D7FU41
Preferred nameSLU7
KEGG koko:K12819,ko:K17081,ko:K20040
KEGG Pathwayko03040,map03040
GOsGO:0000350,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008284,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065003,GO:0065007,GO:0071020,GO:0071021,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.RNA splicing
EggNOG OGsKOG2560@1,KOG2560@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko03041,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.5587375-CDS-H-canaliculatus_F_contig12484:274..4991622928963.5587375-CDS-H-canaliculatus_F_contig12484:274..499Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12484 275..499 +
1696845631.9430654-CDS-H-canaliculatus_F_contig12484:274..4991696845631.9430654-CDS-H-canaliculatus_F_contig12484:274..499Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12484 275..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12484.2102.1prot_H-canaliculatus_F_contig12484.2102.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12484 275..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12484.2102.1

>prot_H-canaliculatus_F_contig12484.2102.1 ID=prot_H-canaliculatus_F_contig12484.2102.1|Name=mRNA_H-canaliculatus_F_contig12484.2102.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=75bp
LAWQGRVARQGGLGGAQMKTTVRNLRIREDRAKYLYNLDPNSAYYDPKTR
AMRDNPMPEANAEDLVFAGDNFIR*
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mRNA from alignment at H-canaliculatus_F_contig12484:275..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12484.2102.1 ID=mRNA_H-canaliculatus_F_contig12484.2102.1|Name=mRNA_H-canaliculatus_F_contig12484.2102.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=225bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12484:275..499+ (Hapterophycus canaliculatus Oshoro5f female)
CTCGCTTGGCAGGGTCGAGTCGCACGCCAGGGTGGTCTCGGCGGCGCACA
GATGAAGACGACCGTCCGTAACCTGCGTATCCGCGAGGACAGGGCCAAGT
ACCTCTACAACCTCGACCCCAACTCGGCCTACTACGACCCCAAGACCCGA
GCCATGCGCGACAACCCAATGCCGGAGGCGAACGCGGAGGACTTGGTCTT
CGCCGGCGACAACTTCATCCGGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12484:275..499+

>mRNA_H-canaliculatus_F_contig12484.2102.1 ID=mRNA_H-canaliculatus_F_contig12484.2102.1|Name=mRNA_H-canaliculatus_F_contig12484.2102.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=450bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12484:275..499+ (Hapterophycus canaliculatus Oshoro5f female)
CTCGCTTGGCAGGGTCGAGTCGCACGCCAGGGTGGTCTCGGCGGCGCACA
GATGAAGACGACCGTCCGTAACCTGCGTATCCGCGAGGACAGGGCCAAGT
ACCTCTACAACCTCGACCCCAACTCGGCCTACTACGACCCCAAGACCCGA
GCCATGCGCGACAACCCAATGCCGGAGGCGAACGCGGAGGACTTGGTCTT
CGCCGGCGACAACTTCATCCGGTAACTCGCTTGGCAGGGTCGAGTCGCAC
GCCAGGGTGGTCTCGGCGGCGCACAGATGAAGACGACCGTCCGTAACCTG
CGTATCCGCGAGGACAGGGCCAAGTACCTCTACAACCTCGACCCCAACTC
GGCCTACTACGACCCCAAGACCCGAGCCATGCGCGACAACCCAATGCCGG
AGGCGAACGCGGAGGACTTGGTCTTCGCCGGCGACAACTTCATCCGGTAA
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