mRNA_H-canaliculatus_F_contig12465.2091.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12465.2091.1
Unique NamemRNA_H-canaliculatus_F_contig12465.2091.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12465.2091.1 vs. uniprot
Match: A0A6H5JNJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ9_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 1.440e-55
Identity = 104/126 (82.54%), Postives = 109/126 (86.51%), Query Frame = 1 
Query:    4 EDGGVVSEQRGLEAAEHEARLLACAVPALRLLRHCLGRLSDAGAQPPVGPLDAVGALLDFEAALAMLPLHPPSPSPPPGTDRNAAM---EPGDFEATPTVALALRAEALVLSSCRLWCPPRPWSRL 372
            E GGVVSEQRGLEAAEHEARLL CA+PALRLLRHCLGRLSDAGA+PPVGPLDAVGALLDFEAALAMLPL  P  S PPG+D   +    E  DF ATP+VALALRAEALVLSSCRLWCPPRPWSRL
Sbjct: 1401 EPGGVVSEQRGLEAAEHEARLLTCALPALRLLRHCLGRLSDAGAEPPVGPLDAVGALLDFEAALAMLPLDLPPSSLPPGSDGKPSPSREESWDFGATPSVALALRAEALVLSSCRLWCPPRPWSRL 1526
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BLAST of mRNA_H-canaliculatus_F_contig12465.2091.1 vs. uniprot
Match: D8LBI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI8_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 1.960e-55
Identity = 104/127 (81.89%), Postives = 109/127 (85.83%), Query Frame = 1 
Query:    1 QEDGGVVSEQRGLEAAEHEARLLACAVPALRLLRHCLGRLSDAGAQPPVGPLDAVGALLDFEAALAMLPLHPPSPSPPPGTDRNAAMEPG---DFEATPTVALALRAEALVLSSCRLWCPPRPWSRL 372
            QE GGVVSEQRGLEAAEHEARLL CA+PALRLLRHCLGRLSDAGA+PPVGPLDAVGALLDFEAALAMLPL  P  S PPG+D   +   G   D  ATP+VALALRAEALVLSSCRLWCPPRPWSRL
Sbjct: 1316 QEPGGVVSEQRGLEAAEHEARLLTCALPALRLLRHCLGRLSDAGAEPPVGPLDAVGALLDFEAALAMLPLDLPPSSLPPGSDVKPSPSRGESWDLGATPSVALALRAEALVLSSCRLWCPPRPWSRL 1442
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12465.2091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNJ9_9PHAE1.440e-5582.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBI8_ECTSI1.960e-5581.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12465contigH-canaliculatus_F_contig12465:1735..2799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size373
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12465.2091.1prot_H-canaliculatus_F_contig12465.2091.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12465 1735..2798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928961.9380414-CDS-H-canaliculatus_F_contig12465:1734..17761622928961.9380414-CDS-H-canaliculatus_F_contig12465:1734..1776Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12465 1735..1776 +
1696845631.1414819-CDS-H-canaliculatus_F_contig12465:1734..17761696845631.1414819-CDS-H-canaliculatus_F_contig12465:1734..1776Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12465 1735..1776 +
1622928961.9606328-CDS-H-canaliculatus_F_contig12465:2083..22271622928961.9606328-CDS-H-canaliculatus_F_contig12465:2083..2227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12465 2084..2227 +
1696845631.151085-CDS-H-canaliculatus_F_contig12465:2083..22271696845631.151085-CDS-H-canaliculatus_F_contig12465:2083..2227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12465 2084..2227 +
1622928961.9941258-CDS-H-canaliculatus_F_contig12465:2612..27981622928961.9941258-CDS-H-canaliculatus_F_contig12465:2612..2798Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12465 2613..2798 +
1696845631.1592681-CDS-H-canaliculatus_F_contig12465:2612..27981696845631.1592681-CDS-H-canaliculatus_F_contig12465:2612..2798Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12465 2613..2798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12465.2091.1

>prot_H-canaliculatus_F_contig12465.2091.1 ID=prot_H-canaliculatus_F_contig12465.2091.1|Name=mRNA_H-canaliculatus_F_contig12465.2091.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=124bp
QEDGGVVSEQRGLEAAEHEARLLACAVPALRLLRHCLGRLSDAGAQPPVG
PLDAVGALLDFEAALAMLPLHPPSPSPPPGTDRNAAMEPGDFEATPTVAL
ALRAEALVLSSCRLWCPPRPWSRL
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mRNA from alignment at H-canaliculatus_F_contig12465:1735..2799+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12465.2091.1 ID=mRNA_H-canaliculatus_F_contig12465.2091.1|Name=mRNA_H-canaliculatus_F_contig12465.2091.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1065bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12465:1735..2799+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGAAGACGGGGGGGTCGTGTCGGAGCAGAGGGGGCTCGAGGTGAGGGG
AAGCATGAATGGATGCGTGCATGGTGTGTGTGTGTGTGTCTGTGTGTGTG
TGTGTGTGTGTGTGTGTATCTATGGAGGGGGTTCCGAGACTTAAGGGTCT
TTGCATTCGTTTCCGTCGGCACTGTTTTTGGTCCGCGCGAGTTCGGAGCT
GTGTCTTGCCGTGTTTTTTCTGGCTACACACGTGGCGAACGTGGAATTGA
TCGCGGCCCCGATGTTCCATCCTTTCGCTCGATCGGTAACAAACGCCGTA
CACGTGTGCGTGCTCGTATATGCGACGCGATGCGATGCGATAACCCCAGG
CTGCTGAGCACGAAGCGCGTCTGTTGGCGTGCGCGGTCCCGGCGTTACGC
CTGCTGCGGCACTGCTTAGGTCGGCTCTCCGACGCGGGCGCGCAGCCTCC
CGTCGGACCTCTGGACGCCGTCGGCGCGTTGCTGGATTTCGAGGTATGAA
CACGAGTGAGGGGTGTTGGTGGTCTTCTGTTATTCGAAGCGTGGTGGTGC
TGTTTGTTGGGCGTTTTCTCGCGTTTTTCCGGCGTCTTTATCTGATGTGG
GACCTGGTTTTTCTCCTCCGGGCGGTGCCGGCTGCATTCGAGGGGCTTGT
TCCACAAGTCCGAGGGCGTTTATTCGCTTGTTTTTGCTTTTACAATCGCC
CCGTGGCAGGACACAAAGTTGGCATGGATTCAAAAACAGCCCATGCTCTT
CGGCCGCCGCGTGGCCGAACCCACCCAAGTTGGAAGTCATCGTGAATCGT
TCCTTACGCTGCTCACACCCGTCACAATCCTGGCCCCTCCCCCTCCCTAC
TACTGCACGGCGGGTCCTGGAACTCCAGGCGGCCTTGGCGATGCTTCCGC
TGCACCCGCCGTCCCCGTCCCCACCCCCGGGGACCGATCGCAACGCCGCC
ATGGAACCCGGGGACTTCGAGGCGACCCCGACGGTGGCTCTCGCCCTGCG
CGCCGAAGCCCTCGTGCTGAGTTCCTGCCGCCTCTGGTGCCCGCCCCGAC
CGTGGTCCCGACTGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12465:1735..2799+

>mRNA_H-canaliculatus_F_contig12465.2091.1 ID=mRNA_H-canaliculatus_F_contig12465.2091.1|Name=mRNA_H-canaliculatus_F_contig12465.2091.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=744bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12465:1735..2799+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGAAGACGGGGGGGTCGTGTCGGAGCAGAGGGGGCTCGAGCAGGAAGA
CGGGGGGGTCGTGTCGGAGCAGAGGGGGCTCGAGGCTGCTGAGCACGAAG
CGCGTCTGTTGGCGTGCGCGGTCCCGGCGTTACGCCTGCTGCGGCACTGC
TTAGGTCGGCTCTCCGACGCGGGCGCGCAGCCTCCCGTCGGACCTCTGGA
CGCCGTCGGCGCGTTGCTGGATTTCGAGGCTGCTGAGCACGAAGCGCGTC
TGTTGGCGTGCGCGGTCCCGGCGTTACGCCTGCTGCGGCACTGCTTAGGT
CGGCTCTCCGACGCGGGCGCGCAGCCTCCCGTCGGACCTCTGGACGCCGT
CGGCGCGTTGCTGGATTTCGAGGCGGCCTTGGCGATGCTTCCGCTGCACC
CGCCGTCCCCGTCCCCACCCCCGGGGACCGATCGCAACGCCGCCATGGAA
CCCGGGGACTTCGAGGCGACCCCGACGGTGGCTCTCGCCCTGCGCGCCGA
AGCCCTCGTGCTGAGTTCCTGCCGCCTCTGGTGCCCGCCCCGACCGTGGT
CCCGACTGGCGGCCTTGGCGATGCTTCCGCTGCACCCGCCGTCCCCGTCC
CCACCCCCGGGGACCGATCGCAACGCCGCCATGGAACCCGGGGACTTCGA
GGCGACCCCGACGGTGGCTCTCGCCCTGCGCGCCGAAGCCCTCGTGCTGA
GTTCCTGCCGCCTCTGGTGCCCGCCCCGACCGTGGTCCCGACTG
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