mRNA_H-canaliculatus_F_contig12465.2090.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12465.2090.1
Unique NamemRNA_H-canaliculatus_F_contig12465.2090.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12465.2090.1 vs. uniprot
Match: A0A6H5JNJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ9_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 9.930e-18
Identity = 82/168 (48.81%), Postives = 87/168 (51.79%), Query Frame = 1 
Query:    1 PRAGEMMAGLARQSQMLAVYIGLEDAPDVSA-------SSATDA---------------------------------------DPGADRVSNRKPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRGLGASYPAFAGGAAVPALAGLVEILAFGLAKAGANR 366
            PRAGEMMAGLARQS  LAVY+GLED P+ SA       SS T +                                       D  A  +  + PPA    XXXXXXXXXX                  ASRGLGASYPAFAGGAAVPALAGLVEILAFGLAKAGANR
Sbjct: 1081 PRAGEMMAGLARQSHTLAVYLGLEDVPEASAHHTHPPFSSLTFSVTIRRGGGHEQPSPFNTXXXXXXXXXXXXXXXXXXXXXXDGDAASIIRKPPPALQPRXXXXXXXXXXPVIVALTLRLKVLALA--ASRGLGASYPAFAGGAAVPALAGLVEILAFGLAKAGANR 1246
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BLAST of mRNA_H-canaliculatus_F_contig12465.2090.1 vs. uniprot
Match: D8LBI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI8_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 6.730e-15
Identity = 88/181 (48.62%), Postives = 90/181 (49.72%), Query Frame = 1 
Query:    1 PRAGEMMAGLARQSQMLAVYIGLEDAPDVSASSATDADPGADR---VSNRKPP--------------------------------------------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRGLGASYPAFAGGAAVPALAGLVEILAFGLAKAGANR 366
            PRAGEMMAGLARQS  LAVY+GLED PD S S  T   P   R   V +   P                                                         XXXXXXXXXXXXXXXXXX              ASRGLGASYPAFAGGAAVPALAGLVEILAFGLAKAGANR
Sbjct: 1070 PRAGEMMAGLARQSHTLAVYLGLEDVPDASGSLLTPRCPRYHRRGKVHHTHTPFSSLTFSVTIRRGGGHEQPFPLNTNXXXXXXXXXXXXXXXXTAADGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXIVALTLRLKVLALAASRGLGASYPAFAGGAAVPALAGLVEILAFGLAKAGANR 1250
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12465.2090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNJ9_9PHAE9.930e-1848.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBI8_ECTSI6.730e-1548.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12465contigH-canaliculatus_F_contig12465:102..1257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size368
Cds size351
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12465.2090.1prot_H-canaliculatus_F_contig12465.2090.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12465 117..1257 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928961.8424864-UTR-H-canaliculatus_F_contig12465:101..1161622928961.8424864-UTR-H-canaliculatus_F_contig12465:101..116Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12465 102..116 +
1696845631.1113145-UTR-H-canaliculatus_F_contig12465:101..1161696845631.1113145-UTR-H-canaliculatus_F_contig12465:101..116Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12465 102..116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928961.8673882-CDS-H-canaliculatus_F_contig12465:116..1921622928961.8673882-CDS-H-canaliculatus_F_contig12465:116..192Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12465 117..192 +
1696845631.1214983-CDS-H-canaliculatus_F_contig12465:116..1921696845631.1214983-CDS-H-canaliculatus_F_contig12465:116..192Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12465 117..192 +
1622928961.8826296-CDS-H-canaliculatus_F_contig12465:982..12571622928961.8826296-CDS-H-canaliculatus_F_contig12465:982..1257Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12465 983..1257 +
1696845631.131433-CDS-H-canaliculatus_F_contig12465:982..12571696845631.131433-CDS-H-canaliculatus_F_contig12465:982..1257Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12465 983..1257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12465.2090.1

>prot_H-canaliculatus_F_contig12465.2090.1 ID=prot_H-canaliculatus_F_contig12465.2090.1|Name=mRNA_H-canaliculatus_F_contig12465.2090.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=117bp
MMAGLARQSQMLAVYIGLEDAPDVSASSATDADPGADRVSNRKPPAPAPQ
PRTEEERRRAAAPVIIALTLRLKVLALAASRGLGASYPAFAGGAAVPALA
GLVEILAFGLAKAGANR
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mRNA from alignment at H-canaliculatus_F_contig12465:102..1257+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12465.2090.1 ID=mRNA_H-canaliculatus_F_contig12465.2090.1|Name=mRNA_H-canaliculatus_F_contig12465.2090.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1156bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12465:102..1257+ (Hapterophycus canaliculatus Oshoro5f female)
CCGCGAGCGGGGGAGATGATGGCGGGGTTGGCGAGGCAGTCCCAGATGCT
TGCCGTGTACATCGGTCTGGAGGACGCCCCGGACGTGTCAGGTGCGGTGT
CGGAGGAGCCGACCGGGTGCTTCCGGGCGGGGCGCTCGGGAGTGAGGAGG
GCTTCGAGAAGGCGGGCGTGTCGGTCGCCTGTCCCCGCGCGTGCGTTTGG
CGTGGGCGTATCGTGTGTCAACTCGTGCGGCATGACGTGGCGCGGCTTTC
AGATGTTCATGTTCATGTTCATGTCCATGTTCATATTCATGTTCATGTTC
ATGTTCATGTTCATGTTCGTGTCCGTGTTCGTGTTCGCGTTCGTGTTCGT
ATTTATGTTCGTGTTCGTGTTCGTGTTCGTGTTCGTGTTCGTGTTCGTGT
TCGTGTTCGTGTTCATATCTGTGTTCATGTTCATGTTCATGTTCGTGTTT
TCTTTCCTCGGGCCGAAGGTGATGCAGATTGCACCGTCGATAGCACTGCC
GATTGTTCTGCAGATTGCACGGCAGGTTGTCTTCGCTTTGCAGGTCGCTC
GCTGCCCGAGGCTGGCTGCTTGTTTGTTTTGCGCTCGAACGACGCGAGTT
CAAGACGGCCGCGGCGATCCCAAGCGAAAGCCGTACGTGCGCGTGGAAGG
TTTCTCGAGGGTCGGCTTGCTCTCGGGCGCCCGAGAAGCGCGCCATTCCT
TCCTTTATTCTCCCGTTCCGCGCCCTATCATCGCTAGGCTTCCGCTCGCT
GACCTCCCCTCCCTCCCTCCCTCCCTGGCTCCCTCCCTAACTCCGCGTCC
TCCCTCCGCGTCCTCCCTCCGCGTCCTCCTCGCCCGTCTCTCCGCGACGT
CACGAAAAACCCGCCACCGGTTGCACCGCAGCCTCCTCGGCCACGGACGC
GGACCCCGGCGCCGACCGGGTCTCCAACAGGAAGCCGCCCGCTCCGGCGC
CGCAGCCCCGCACCGAAGAAGAGCGGCGGCGCGCGGCGGCCCCGGTGATC
ATCGCCCTCACCCTCCGCCTGAAGGTGCTCGCCCTCGCCGCCTCCAGGGG
GCTCGGCGCCAGCTATCCCGCTTTCGCGGGGGGAGCGGCCGTCCCCGCGC
TGGCGGGGCTCGTGGAAATCCTGGCGTTCGGGCTGGCGAAGGCCGGGGCG
AACCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12465:102..1257+

>mRNA_H-canaliculatus_F_contig12465.2090.1 ID=mRNA_H-canaliculatus_F_contig12465.2090.1|Name=mRNA_H-canaliculatus_F_contig12465.2090.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=702bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12465:102..1257+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGGCGGGGTTGGCGAGGCAGTCCCAGATGCTTGCCGTGTACATCGG
TCTGGAGGACGCCCCGGACGTGTCAGATGATGGCGGGGTTGGCGAGGCAG
TCCCAGATGCTTGCCGTGTACATCGGTCTGGAGGACGCCCCGGACGTGTC
AGCCTCCTCGGCCACGGACGCGGACCCCGGCGCCGACCGGGTCTCCAACA
GGAAGCCGCCCGCTCCGGCGCCGCAGCCCCGCACCGAAGAAGAGCGGCGG
CGCGCGGCGGCCCCGGTGATCATCGCCCTCACCCTCCGCCTGAAGGTGCT
CGCCCTCGCCGCCTCCAGGGGGCTCGGCGCCAGCTATCCCGCTTTCGCGG
GGGGAGCGGCCGTCCCCGCGCTGGCGGGGCTCGTGGAAATCCTGGCGTTC
GGGCTGGCGAAGGCCGGGGCGAACCGGCCTCCTCGGCCACGGACGCGGAC
CCCGGCGCCGACCGGGTCTCCAACAGGAAGCCGCCCGCTCCGGCGCCGCA
GCCCCGCACCGAAGAAGAGCGGCGGCGCGCGGCGGCCCCGGTGATCATCG
CCCTCACCCTCCGCCTGAAGGTGCTCGCCCTCGCCGCCTCCAGGGGGCTC
GGCGCCAGCTATCCCGCTTTCGCGGGGGGAGCGGCCGTCCCCGCGCTGGC
GGGGCTCGTGGAAATCCTGGCGTTCGGGCTGGCGAAGGCCGGGGCGAACC
GG
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