mRNA_H-canaliculatus_F_contig12460.2089.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12460.2089.1
Unique NamemRNA_H-canaliculatus_F_contig12460.2089.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12460.2089.1 vs. uniprot
Match: D7FW82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW82_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 3.700e-31
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = 1 
Query:   19 VASKVSPELTAMPQAGERLDDPRKPMFILVGTKVIVTGAPAQCGRQSPRACKVKAADLVGKTAVVKKMATRINGTRHHTVAFQQWSGGPTTTVTWKVARKHLALHPDSVRARG 357
            VA+K   +  AMP+ GE LDDPRKPM I VGT+V+V  APA+  R  PR C++K +DLVG+T VV KMAT + GTRHH V+F+ W GGP+TT +W  ARK LAL P  + + G
Sbjct:  804 VATKAVLDTMAMPKEGEPLDDPRKPMLIPVGTRVVVKQAPAESSR--PRGCQLKTSDLVGRTGVVTKMATHVQGTRHHMVSFEPWPGGPSTTTSWNFARKRLALCPSGISSGG 914
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BLAST of mRNA_H-canaliculatus_F_contig12460.2089.1 vs. uniprot
Match: A0A6H5L1S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1S6_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.770e-30
Identity = 64/114 (56.14%), Postives = 78/114 (68.42%), Query Frame = 1 
Query:   49 AMPQAGERLDDPRKPMFILVGTKVIVTGAPAQCGRQSPRACKVKAADLVGKTAVVKKMATRINGTRHHTVAFQQWSGGPTTTVTWKVARKHLALHPDSVRARGDGGGKASSVSG 390
            AMP+ GE LDDPRKPM I VGT+V+V  APA+  R  PR C++K +DLVG+T VV KMAT + GTRHH V+F+ W GGP+TT +W  ARK LAL P  +   G GG   S   G
Sbjct:  808 AMPKEGEPLDDPRKPMLIPVGTRVVVKQAPAESSR--PRGCQLKTSDLVGRTGVVTKMATHVQGTRHHMVSFEPWPGGPSTTTSWNFARKRLALCPSGI---GSGGASVSGTRG 916
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12460.2089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW82_ECTSI3.700e-3155.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1S6_9PHAE1.770e-3056.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12460contigH-canaliculatus_F_contig12460:1681..2762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size580
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928961.7699301-CDS-H-canaliculatus_F_contig12460:1680..18841622928961.7699301-CDS-H-canaliculatus_F_contig12460:1680..1884Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12460 1681..1884 +
1696845631.0936227-CDS-H-canaliculatus_F_contig12460:1680..18841696845631.0936227-CDS-H-canaliculatus_F_contig12460:1680..1884Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12460 1681..1884 +
1622928961.7823586-CDS-H-canaliculatus_F_contig12460:2387..27621622928961.7823586-CDS-H-canaliculatus_F_contig12460:2387..2762Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12460 2388..2762 +
1696845631.1020255-CDS-H-canaliculatus_F_contig12460:2387..27621696845631.1020255-CDS-H-canaliculatus_F_contig12460:2387..2762Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12460 2388..2762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12460.2089.1prot_H-canaliculatus_F_contig12460.2089.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12460 1681..2762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12460.2089.1

>prot_H-canaliculatus_F_contig12460.2089.1 ID=prot_H-canaliculatus_F_contig12460.2089.1|Name=mRNA_H-canaliculatus_F_contig12460.2089.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=193bp
EETRDEVASKVSPELTAMPQAGERLDDPRKPMFILVGTKVIVTGAPAQCG
RQSPRACKVKAADLVGKTAVVKKMATRINGTRHHTVAFQQWSGGPTTTVT
WKVARKHLALHPDSVRARGDGGGKASSVSGDLSPSSGRRRAKDAPAAAQD
KEKGKRGVEKEEENEAQEQRGDEEEGEKWQQQQQQQQQEEEEE
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mRNA from alignment at H-canaliculatus_F_contig12460:1681..2762+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12460.2089.1 ID=mRNA_H-canaliculatus_F_contig12460.2089.1|Name=mRNA_H-canaliculatus_F_contig12460.2089.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1082bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12460:1681..2762+ (Hapterophycus canaliculatus Oshoro5f female)
GAAGAGACTAGGGATGAGGTCGCCTCCAAAGTGTCGCCGGAGTTGACGGC
CATGCCTCAAGCAGGAGAGCGGCTTGATGACCCCCGAAAGCCCATGTTCA
TTCTTGTGGGCACGAAGGTCATCGTTACGGGTGCGCCAGCCCAATGCGGT
CGACAATCTCCGCGAGCTTGCAAGGTCAAAGCGGCAGATCTGGTGGGAAA
GACGGTGAGACAGGCAAACGTCAAGCGACGCTACCAATCATTCTCCGTGG
CACAACGTGCTGTAATTGTCGGCAGCTGAAGTAGGCTTGAGTCCATGGCG
CTACGGGTAGCTTCTGTCTTTGTTCGGAATCGAAAAATTGGACCGGCTTC
TGTGAGAATGGGAAAGGTTTCGTGGAGTGGTCGTTTCATGAATGTTGCGG
CTTCGAAGTGGGTAACAACATACTCTCGACGTCTCTCGCATGCAGTCTCA
AGAGAAGCCGCTGCTCCGAGCCAATATTTTTTTTGCCAAAGCGATAACCC
TCGAAACAGACGCTTTCCTGTAGCATCTTGTCACGCCATTCTTTGGCCTT
TTGGGGGGGAAATAGCCAGTCACTCAGGGGAGCTCATGAGCACCATACAC
GCAGGCACGTCAATTTACCTTCCAGGGACTATGGATGTGTAGATTGTTTG
ATAATCTCATGATCTTTTGTCTCATTCGCGCTGTCGAAATTTTTTTGTTT
GTGCCAGGCCGTCGTGAAAAAGATGGCCACCCGCATCAACGGCACTCGCC
ATCACACGGTGGCATTCCAGCAGTGGTCGGGCGGGCCTACCACTACGGTT
ACCTGGAAGGTTGCCCGCAAGCACCTAGCTCTACACCCTGATAGCGTGAG
AGCGCGCGGTGATGGTGGCGGAAAAGCGTCCTCTGTCTCCGGAGATCTCT
CTCCGAGCAGCGGGAGGAGGAGGGCCAAGGATGCCCCGGCGGCGGCACAA
GATAAGGAGAAGGGAAAAAGGGGAGTGGAGAAGGAGGAGGAGAACGAGGC
ACAGGAGCAGAGGGGAGACGAGGAGGAAGGAGAGAAGTGGCAGCAGCAGC
AGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12460:1681..2762+

>mRNA_H-canaliculatus_F_contig12460.2089.1 ID=mRNA_H-canaliculatus_F_contig12460.2089.1|Name=mRNA_H-canaliculatus_F_contig12460.2089.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1158bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12460:1681..2762+ (Hapterophycus canaliculatus Oshoro5f female)
GAAGAGACTAGGGATGAGGTCGCCTCCAAAGTGTCGCCGGAGTTGACGGC
CATGCCTCAAGCAGGAGAGCGGCTTGATGACCCCCGAAAGCCCATGTTCA
TTCTTGTGGGCACGAAGGTCATCGTTACGGGTGCGCCAGCCCAATGCGGT
CGACAATCTCCGCGAGCTTGCAAGGTCAAAGCGGCAGATCTGGTGGGAAA
GACGGAAGAGACTAGGGATGAGGTCGCCTCCAAAGTGTCGCCGGAGTTGA
CGGCCATGCCTCAAGCAGGAGAGCGGCTTGATGACCCCCGAAAGCCCATG
TTCATTCTTGTGGGCACGAAGGTCATCGTTACGGGTGCGCCAGCCCAATG
CGGTCGACAATCTCCGCGAGCTTGCAAGGTCAAAGCGGCAGATCTGGTGG
GAAAGACGGCCGTCGTGAAAAAGATGGCCACCCGCATCAACGGCACTCGC
CATCACACGGTGGCATTCCAGCAGTGGTCGGGCGGGCCTACCACTACGGT
TACCTGGAAGGTTGCCCGCAAGCACCTAGCTCTACACCCTGATAGCGTGA
GAGCGCGCGGTGATGGTGGCGGAAAAGCGTCCTCTGTCTCCGGAGATCTC
TCTCCGAGCAGCGGGAGGAGGAGGGCCAAGGATGCCCCGGCGGCGGCACA
AGATAAGGAGAAGGGAAAAAGGGGAGTGGAGAAGGAGGAGGAGAACGAGG
CACAGGAGCAGAGGGGAGACGAGGAGGAAGGAGAGAAGTGGCAGCAGCAG
CAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGCCGTCGTGAAAAAGAT
GGCCACCCGCATCAACGGCACTCGCCATCACACGGTGGCATTCCAGCAGT
GGTCGGGCGGGCCTACCACTACGGTTACCTGGAAGGTTGCCCGCAAGCAC
CTAGCTCTACACCCTGATAGCGTGAGAGCGCGCGGTGATGGTGGCGGAAA
AGCGTCCTCTGTCTCCGGAGATCTCTCTCCGAGCAGCGGGAGGAGGAGGG
CCAAGGATGCCCCGGCGGCGGCACAAGATAAGGAGAAGGGAAAAAGGGGA
GTGGAGAAGGAGGAGGAGAACGAGGCACAGGAGCAGAGGGGAGACGAGGA
GGAAGGAGAGAAGTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGG
AGGAGGAG
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