mRNA_H-canaliculatus_F_contig1245.2078.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1245.2078.1
Unique NamemRNA_H-canaliculatus_F_contig1245.2078.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1245.2078.1 vs. uniprot
Match: A0A6H5K7B9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7B9_9PHAE)

HSP 1 Score: 331 bits (848), Expect = 1.930e-102
Identity = 171/210 (81.43%), Postives = 189/210 (90.00%), Query Frame = 2 
Query: 1187 QLVMNYLIVEGYRDAAEHFVEESGTEANVDLATIEDRVAIRKAMMRGDIVQAMELANDMDPTMLDRDSELRFGLLKQRLVELVRRGDSDAALTFAAEHLAPEGAENPAVLRQIEEVVTLLAFEDAASCPLSGLLDMEQRQAAAGRLNAAVLQSQQQEKGPWLPDLLRQLVYTQNALSEKVEFPRIEGIGGNTEA---------GTAEGPR 1789
            +LVMNYL+VEGYRDAAEHFVEESGT+A VDL TIE+RVAIRKAMM+G++V+AM+LAND+DPTMLDRD ELRFGLLKQRL+ELVRRGD+D AL+FAAEHLAPEGA++PA+LRQIEE VTLLAFEDA S PLSGLLDMEQR AAAGRLNAAVLQSQQQE GPWLPDLLRQLVYTQNALSE+VEFPRIEGIGG  E          G+AEGPR
Sbjct:   47 ELVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKAMMQGNVVEAMKLANDLDPTMLDRDRELRFGLLKQRLLELVRRGDADEALSFAAEHLAPEGAQDPAILRQIEEAVTLLAFEDATSSPLSGLLDMEQRHAAAGRLNAAVLQSQQQETGPWLPDLLRQLVYTQNALSERVEFPRIEGIGGTKEGVGGTRSTGDGSAEGPR 256
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BLAST of mRNA_H-canaliculatus_F_contig1245.2078.1 vs. uniprot
Match: A0A1Y1Y6B0_9FUNG (Uncharacterized protein n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y6B0_9FUNG)

HSP 1 Score: 195 bits (496), Expect = 3.610e-53
Identity = 99/188 (52.66%), Postives = 131/188 (69.68%), Query Frame = 2 
Query: 1187 QLVMNYLIVEGYRDAAEHFVEESGTEANVDLATIEDRVAIRKAMMRGDIVQAMELANDMDPTMLDRDSELRFGLLKQRLVELVRRGDSDAALTFAAEHLAPEGAENPAVLRQIEEVVTLLAFEDAASCPLSGLLDMEQRQAAAGRLNAAVLQSQQQEKGPWLPDLLRQLVYTQNALSEKVEFPRIEGI 1750
            +LVMNYL++EGY+DAAE F +E G   N+DL +IEDR+ IR A+  GDI +A+E  ND+DP +LD + +L F L +QRL+EL+R+G+ D AL FA E LAP G ENP +L+++E+ + LLAFED    P+  LLD   RQ  A  LNAA+L SQ Q+K P LP LL+ LV+ QN L EK  +PRI   
Sbjct:   31 KLVMNYLVIEGYKDAAEKFSQECGLSPNIDLTSIEDRMNIRNAVHSGDIGEAVERVNDLDPEILDTNPKLFFHLQQQRLIELIRKGNVDEALEFAQEELAPRGEENPEMLQELEQTMALLAFEDLNKSPVGELLDHTHRQKTASELNAAILTSQSQDKDPKLPGLLKMLVWAQNQLDEKTNYPRINNF 218
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BLAST of mRNA_H-canaliculatus_F_contig1245.2078.1 vs. uniprot
Match: D8QSL2_SELML (Uncharacterized protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QSL2_SELML)

HSP 1 Score: 195 bits (495), Expect = 5.590e-53
Identity = 100/192 (52.08%), Postives = 131/192 (68.23%), Query Frame = 2 
Query: 1175 EPTTQLVMNYLIVEGYRDAAEHFVEESGTEANVDLATIEDRVAIRKAMMRGDIVQAMELANDMDPTMLDRDSELRFGLLKQRLVELVRRGDSDAALTFAAEHLAPEGAENPAVLRQIEEVVTLLAFEDAASCPLSGLLDMEQRQAAAGRLNAAVLQSQQQEKGPWLPDLLRQLVYTQNALSEKVEFPRIEGI 1750
            E   +LVMN+L+ EGY DAAE F  ESGT   VDL +I DR+A+RKA+  G++  A+E  ND++P +LD + +L F L +QRL+EL+R G  + AL FA E LAP G EN + L ++E  V LLAFED ++CP+  LLD  QRQ  A  LNAA+L SQ  EK P LP LL+ L+++QN L EKV +PRI  I
Sbjct:   29 EDMNKLVMNFLVTEGYVDAAEKFQHESGTSPEVDLGSITDRMAVRKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRSGKLEEALEFAQEELAPRGEENHSFLEELERTVALLAFEDTSNCPVGDLLDFSQRQKTASELNAAILTSQSHEKDPKLPSLLKMLIWSQNQLDEKVSYPRINDI 220
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BLAST of mRNA_H-canaliculatus_F_contig1245.2078.1 vs. uniprot
Match: A0A2V3IQM8_9FLOR (Glucose-induced degradation protein 8-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQM8_9FLOR)

HSP 1 Score: 194 bits (492), Expect = 2.340e-52
Identity = 95/186 (51.08%), Postives = 133/186 (71.51%), Query Frame = 2 
Query: 1187 QLVMNYLIVEGYRDAAEHFVEESGTEANVDLATIEDRVAIRKAMMRGDIVQAMELANDMDPTMLDRDSELRFGLLKQRLVELVRRGDSDAALTFAAEHLAPEGAENPAVLRQIEEVVTLLAFEDAASCPLSGLLDMEQRQAAAGRLNAAVLQSQQQEKGPWLPDLLRQLVYTQNALSEKVEFPRIE 1744
            +L+MNYL++EGY++AAE F +E GT   +DL +I DR+A R A+ RGD+  A+E AND++P +LD + +L F L +Q+L+EL+R GD +AAL FA + LAP G ENP  L ++E  + LLAFED + CP++ LL+  QRQ  A  LNAA+L SQ QEK P LP LL+ L++TQ  L EK +FP ++
Sbjct:   48 KLIMNYLVIEGYKEAAEKFQQECGTPPGIDLPSISDRMATRVAIQRGDVQSAIERANDLNPLILDENPQLFFHLQQQKLIELIRNGDIEAALAFAEKELAPRGEENPQFLTELERTMALLAFEDKSKCPVADLLEPAQRQKTASELNAAILTSQCQEKEPKLPSLLKMLLWTQEQLKEKAQFPEMD 233
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BLAST of mRNA_H-canaliculatus_F_contig1245.2078.1 vs. uniprot
Match: A0A1Y1HP05_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HP05_KLENI)

HSP 1 Score: 192 bits (489), Expect = 3.540e-52
Identity = 100/192 (52.08%), Postives = 130/192 (67.71%), Query Frame = 2 
Query: 1175 EPTTQLVMNYLIVEGYRDAAEHFVEESGTEANVDLATIEDRVAIRKAMMRGDIVQAMELANDMDPTMLDRDSELRFGLLKQRLVELVRRGDSDAALTFAAEHLAPEGAENPAVLRQIEEVVTLLAFEDAASCPLSGLLDMEQRQAAAGRLNAAVLQSQQQEKGPWLPDLLRQLVYTQNALSEKVEFPRIEGI 1750
            E   +LVMNYL+ EGY DAAE F  ESG +  +DL+TI DR+ +RKA+  G++  A+E  ND++P +LD + +L F L +QRL+EL+R G  + AL FA E LAP G EN   L ++E  V LLAFED A+ P+S LLD+ QRQ  A  LNAA+L SQ  EK P LP LL+ LV+ QN L EKV +PRI  +
Sbjct:   29 EDMNKLVMNYLVTEGYVDAAEKFQLESGVKPEIDLSTITDRMTVRKAVQSGNVEDALEKVNDLNPEILDTNPQLFFHLQQQRLIELIRSGKVEEALEFAQEELAPRGEENHQFLEELERTVALLAFEDTANSPVSDLLDISQRQKTASELNAAILTSQSHEKDPRLPSLLKMLVWAQNQLDEKVSYPRINDL 220
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BLAST of mRNA_H-canaliculatus_F_contig1245.2078.1 vs. uniprot
Match: A0A2G2XXA3_CAPAN (glucose-induced degradation protein 8 homolog isoform X2 n=6 Tax=Capsicum TaxID=4071 RepID=A0A2G2XXA3_CAPAN)

HSP 1 Score: 193 bits (490), Expect = 3.980e-52
Identity = 97/192 (50.52%), Postives = 133/192 (69.27%), Query Frame = 2 
Query: 1175 EPTTQLVMNYLIVEGYRDAAEHFVEESGTEANVDLATIEDRVAIRKAMMRGDIVQAMELANDMDPTMLDRDSELRFGLLKQRLVELVRRGDSDAALTFAAEHLAPEGAENPAVLRQIEEVVTLLAFEDAASCPLSGLLDMEQRQAAAGRLNAAVLQSQQQEKGPWLPDLLRQLVYTQNALSEKVEFPRIEGI 1750
            E T +LVMN+L+ EGY +AAE F  ESGT+ ++DLATI DR+A++KA+  G++ +A+E  ND++P +LD + +L F L +QRL+EL+R G  + AL FA E LAP G EN A L  +E+ V LLAFED + CP+  LLD+ QR   A  +NAA+L SQ  EK P LP LL+ L++ QN L EK  +PRI  +
Sbjct:   42 EDTNRLVMNFLVTEGYVEAAEKFRMESGTDPDIDLATILDRMAVKKAVQSGNVEEAIEKVNDLNPEILDTNPQLSFHLQQQRLIELIRNGKIEEALEFAQEELAPRGEENQAFLEDLEKTVALLAFEDVSKCPVGDLLDVSQRLKTASEINAAILTSQSHEKDPKLPSLLKMLIWAQNQLDEKAFYPRITNL 233
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BLAST of mRNA_H-canaliculatus_F_contig1245.2078.1 vs. uniprot
Match: B9HYM5_POPTR (Uncharacterized protein n=38 Tax=Magnoliopsida TaxID=3398 RepID=B9HYM5_POPTR)

HSP 1 Score: 192 bits (489), Expect = 5.440e-52
Identity = 97/192 (50.52%), Postives = 133/192 (69.27%), Query Frame = 2 
Query: 1175 EPTTQLVMNYLIVEGYRDAAEHFVEESGTEANVDLATIEDRVAIRKAMMRGDIVQAMELANDMDPTMLDRDSELRFGLLKQRLVELVRRGDSDAALTFAAEHLAPEGAENPAVLRQIEEVVTLLAFEDAASCPLSGLLDMEQRQAAAGRLNAAVLQSQQQEKGPWLPDLLRQLVYTQNALSEKVEFPRIEGI 1750
            E   +LVMN+L+ EGY DAAE F  ESGTE ++DLATI DR+A++KA+  G++  A+E  ND++P +LD + +L F L +QR +EL+R G  + AL FA E LAP G EN + L ++E  V LLAFED ++CP+ GLLD+ QR   A  +NAA+L SQ +EK P LP LL+ L++ QN L EK  +PRI  +
Sbjct:   42 EDMNKLVMNFLVTEGYVDAAEKFQMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRFIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGGLLDISQRLKTASEVNAAILTSQSREKDPKLPSLLKMLLWAQNQLDEKAVYPRINDL 233
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BLAST of mRNA_H-canaliculatus_F_contig1245.2078.1 vs. uniprot
Match: M1C1M8_SOLTU (Uncharacterized protein n=4 Tax=Solanum TaxID=4107 RepID=M1C1M8_SOLTU)

HSP 1 Score: 192 bits (489), Expect = 5.610e-52
Identity = 97/192 (50.52%), Postives = 132/192 (68.75%), Query Frame = 2 
Query: 1175 EPTTQLVMNYLIVEGYRDAAEHFVEESGTEANVDLATIEDRVAIRKAMMRGDIVQAMELANDMDPTMLDRDSELRFGLLKQRLVELVRRGDSDAALTFAAEHLAPEGAENPAVLRQIEEVVTLLAFEDAASCPLSGLLDMEQRQAAAGRLNAAVLQSQQQEKGPWLPDLLRQLVYTQNALSEKVEFPRIEGI 1750
            E T +LVMN+L+ EGY +AAE F  ESGTE  +DLATI+DR+A+ KA+  G++  A+E+ ND++P +LD + +L F L +QRL+EL+R G  + AL FA E LAP G EN + L  +E+ V LLAFED + CP   LLD+ QR   A  +NAA+L SQ  EK P LP LL+ L++ Q+ L EKV +PRI  +
Sbjct:   43 EDTDRLVMNFLVTEGYAEAAEKFKMESGTEPEIDLATIKDRMAVNKAVQSGNVEDAIEMVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPMGEENQSFLEDLEKTVALLAFEDVSKCPAGALLDVSQRLKTASEVNAAILTSQNHEKDPKLPSLLKMLIWVQDQLDEKVYYPRITNL 234
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BLAST of mRNA_H-canaliculatus_F_contig1245.2078.1 vs. uniprot
Match: A0A0D6QUP9_ARACU (Uncharacterized protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6QUP9_ARACU)

HSP 1 Score: 192 bits (489), Expect = 6.740e-52
Identity = 99/196 (50.51%), Postives = 132/196 (67.35%), Query Frame = 2 
Query: 1175 EPTTQLVMNYLIVEGYRDAAEHFVEESGTEANVDLATIEDRVAIRKAMMRGDIVQAMELANDMDPTMLDRDSELRFGLLKQRLVELVRRGDSDAALTFAAEHLAPEGAENPAVLRQIEEVVTLLAFEDAASCPLSGLLDMEQRQAAAGRLNAAVLQSQQQEKGPWLPDLLRQLVYTQNALSEKVEFPRIEGIGGNT 1762
            E   +LVMN+L+ EGY +AAE F  ESGTE  +DLATI DR+A+R+A+  G++  A+E  ND++P +LD + +L F L +QRL+EL+R G  + AL FA E LAP G EN A L ++E  V LLAFED ++CPL+ LLD+ QR   A  +NAA+L SQ  EK P LP LL+ L++ QN L EK  +P I  I   T
Sbjct:   49 EDMNKLVMNFLVTEGYVEAAERFRMESGTEPEIDLATITDRMAVRRAVQSGNVQDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRSGKLEEALEFAQEELAPRGEENQAFLEELERTVALLAFEDTSNCPLAELLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDEKARYPHISDISNAT 244
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BLAST of mRNA_H-canaliculatus_F_contig1245.2078.1 vs. uniprot
Match: A0A058ZTY9_EUCGR (Uncharacterized protein n=9 Tax=Myrtoideae TaxID=1699513 RepID=A0A058ZTY9_EUCGR)

HSP 1 Score: 192 bits (487), Expect = 8.990e-52
Identity = 97/192 (50.52%), Postives = 134/192 (69.79%), Query Frame = 2 
Query: 1175 EPTTQLVMNYLIVEGYRDAAEHFVEESGTEANVDLATIEDRVAIRKAMMRGDIVQAMELANDMDPTMLDRDSELRFGLLKQRLVELVRRGDSDAALTFAAEHLAPEGAENPAVLRQIEEVVTLLAFEDAASCPLSGLLDMEQRQAAAGRLNAAVLQSQQQEKGPWLPDLLRQLVYTQNALSEKVEFPRIEGI 1750
            E   +LVMN+L+ EG+ DAAE F +ESGTE ++DL+TI DR+A++KA+  G++  A+E  ND++P +LD + +L F L +QRL+EL+R G  + AL FA E LAP G EN + L ++E  V LLAFED ++CP+  LLDM QR   A  +NAA+L SQ  EK P LP LL+ LV+ QN L EK  +PRI+ +
Sbjct:   37 EDMNKLVMNFLVTEGFVDAAEKFRKESGTEPDIDLSTITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDMSQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLVWAQNQLDEKAIYPRIKDL 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1245.2078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7B9_9PHAE1.930e-10281.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Y1Y6B0_9FUNG3.610e-5352.66Uncharacterized protein n=2 Tax=Basidiobolus meris... [more]
D8QSL2_SELML5.590e-5352.08Uncharacterized protein n=1 Tax=Selaginella moelle... [more]
A0A2V3IQM8_9FLOR2.340e-5251.08Glucose-induced degradation protein 8-like n=1 Tax... [more]
A0A1Y1HP05_KLENI3.540e-5252.08Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A2G2XXA3_CAPAN3.980e-5250.52glucose-induced degradation protein 8 homolog isof... [more]
B9HYM5_POPTR5.440e-5250.52Uncharacterized protein n=38 Tax=Magnoliopsida Tax... [more]
M1C1M8_SOLTU5.610e-5250.52Uncharacterized protein n=4 Tax=Solanum TaxID=4107... [more]
A0A0D6QUP9_ARACU6.740e-5250.51Uncharacterized protein n=1 Tax=Araucaria cunningh... [more]
A0A058ZTY9_EUCGR8.990e-5250.52Uncharacterized protein n=9 Tax=Myrtoideae TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1245contigH-canaliculatus_F_contig1245:1381..7243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score335.9
Seed ortholog evalue1.6e-89
Seed eggNOG ortholog2880.D7G2A7
Preferred nameGID8
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0007089,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010564,GO:0010675,GO:0010677,GO:0010906,GO:0019222,GO:0019538,GO:0019941,GO:0030054,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045721,GO:0045787,GO:0045912,GO:0045931,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051603,GO:0051726,GO:0062012,GO:0062014,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090068,GO:1900087,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:2000045
EggNOG free text desc.negative regulation of gluconeogenesis
EggNOG OGsKOG2659@1,KOG2659@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLisH dimerisation motif, subgroup
Ec32 orthologEc-16_001850.1
Exons8
Model size3123
Cds size741
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1245.2078.1prot_H-canaliculatus_F_contig1245.2078.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1245 2432..5215 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.4160616-UTR-H-canaliculatus_F_contig1245:1380..24311622928960.4160616-UTR-H-canaliculatus_F_contig1245:1380..2431Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1245 1381..2431 +
1696845630.5979955-UTR-H-canaliculatus_F_contig1245:1380..24311696845630.5979955-UTR-H-canaliculatus_F_contig1245:1380..2431Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1245 1381..2431 +
1622928960.523202-UTR-H-canaliculatus_F_contig1245:5215..52881622928960.523202-UTR-H-canaliculatus_F_contig1245:5215..5288Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1245 5216..5288 +
1696845630.6542838-UTR-H-canaliculatus_F_contig1245:5215..52881696845630.6542838-UTR-H-canaliculatus_F_contig1245:5215..5288Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1245 5216..5288 +
1622928960.536651-UTR-H-canaliculatus_F_contig1245:5304..64021622928960.536651-UTR-H-canaliculatus_F_contig1245:5304..6402Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1245 5305..6402 +
1696845630.664633-UTR-H-canaliculatus_F_contig1245:5304..64021696845630.664633-UTR-H-canaliculatus_F_contig1245:5304..6402Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1245 5305..6402 +
1622928960.5537066-UTR-H-canaliculatus_F_contig1245:6771..68661622928960.5537066-UTR-H-canaliculatus_F_contig1245:6771..6866Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1245 6772..6866 +
1696845630.6737514-UTR-H-canaliculatus_F_contig1245:6771..68661696845630.6737514-UTR-H-canaliculatus_F_contig1245:6771..6866Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1245 6772..6866 +
1622928960.572112-UTR-H-canaliculatus_F_contig1245:7178..72431622928960.572112-UTR-H-canaliculatus_F_contig1245:7178..7243Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1245 7179..7243 +
1696845630.6832857-UTR-H-canaliculatus_F_contig1245:7178..72431696845630.6832857-UTR-H-canaliculatus_F_contig1245:7178..7243Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1245 7179..7243 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.4343626-CDS-H-canaliculatus_F_contig1245:2431..26921622928960.4343626-CDS-H-canaliculatus_F_contig1245:2431..2692Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1245 2432..2692 +
1696845630.6087515-CDS-H-canaliculatus_F_contig1245:2431..26921696845630.6087515-CDS-H-canaliculatus_F_contig1245:2431..2692Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1245 2432..2692 +
1622928960.4535894-CDS-H-canaliculatus_F_contig1245:3688..37651622928960.4535894-CDS-H-canaliculatus_F_contig1245:3688..3765Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1245 3689..3765 +
1696845630.6174452-CDS-H-canaliculatus_F_contig1245:3688..37651696845630.6174452-CDS-H-canaliculatus_F_contig1245:3688..3765Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1245 3689..3765 +
1622928960.4735086-CDS-H-canaliculatus_F_contig1245:4170..43361622928960.4735086-CDS-H-canaliculatus_F_contig1245:4170..4336Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1245 4171..4336 +
1696845630.6259804-CDS-H-canaliculatus_F_contig1245:4170..43361696845630.6259804-CDS-H-canaliculatus_F_contig1245:4170..4336Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1245 4171..4336 +
1622928960.488961-CDS-H-canaliculatus_F_contig1245:4648..47981622928960.488961-CDS-H-canaliculatus_F_contig1245:4648..4798Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1245 4649..4798 +
1696845630.63486-CDS-H-canaliculatus_F_contig1245:4648..47981696845630.63486-CDS-H-canaliculatus_F_contig1245:4648..4798Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1245 4649..4798 +
1622928960.5073771-CDS-H-canaliculatus_F_contig1245:5128..52151622928960.5073771-CDS-H-canaliculatus_F_contig1245:5128..5215Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1245 5129..5215 +
1696845630.6457977-CDS-H-canaliculatus_F_contig1245:5128..52151696845630.6457977-CDS-H-canaliculatus_F_contig1245:5128..5215Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1245 5129..5215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1245.2078.1

>prot_H-canaliculatus_F_contig1245.2078.1 ID=prot_H-canaliculatus_F_contig1245.2078.1|Name=mRNA_H-canaliculatus_F_contig1245.2078.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=247bp
MSFTIQEPIMPHEPVKTPGSLQTGIEHRAPPTPTNQPLQTNEPTTQLVMN
YLIVEGYRDAAEHFVEESGTEANVDLATIEDRVAIRKAMMRGDIVQAMEL
ANDMDPTMLDRDSELRFGLLKQRLVELVRRGDSDAALTFAAEHLAPEGAE
NPAVLRQIEEVVTLLAFEDAASCPLSGLLDMEQRQAAAGRLNAAVLQSQQ
QEKGPWLPDLLRQLVYTQNALSEKVEFPRIEGIGGNTEAGTAEGPR*
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mRNA from alignment at H-canaliculatus_F_contig1245:1381..7243+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1245.2078.1 ID=mRNA_H-canaliculatus_F_contig1245.2078.1|Name=mRNA_H-canaliculatus_F_contig1245.2078.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5863bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1245:1381..7243+ (Hapterophycus canaliculatus Oshoro5f female)
ACCACAACAGCTGCTCGCCTACGAGTACACGATGCCATTGCTTCTGCTGG
ACCACGCTGAGCGTGCGGTTGGGAGGTGTGTGGGCGTGGTGGCAGATGTT
TGAACGCCGTCTGTTCACACGACGCATAGGTTCTCCCGAAACGGAATCGG
TCTAACCTTCGGCCTAGAGAAAAGAGAGAAGTGCAAAAAGAAAGAAGAAA
AAAGAACATCCGCCACCATTTGCGCGGTATCCAGTACTGACTGACGGTGT
CATTTGGGCGGTATCCTATTCTGGCGATATCTTGTGTTGCCGGTAGACGG
AAATAGAGAAAATGCCGGTAATTTTCTGACTGTATCTGCCGGTCGCCGGT
ATTTGTGTTGCCGGTAGACGGTAATACTTGTAGCGACTCTACCGGTACTT
TTCTGGCGGTATCTGCCGGTTGCCGGTATATATTTTGCCGGTAAACGGTG
ACAGCGAATCTACCGTTACTTTTCGGGAGGTATGTAAAGAATGCCGGTAT
TTATTTTGCGGTAGACGGTGATAGTGTATCTGGCGGTATTCATGGACCGC
CAGACTGTAGTATCGTGAATCTAACGGTAATTTATCAGACGGTGGGCAAG
ACGACGGTAGTTTTCCTGAAGTAAGACGGTATTTCGTTTTTCGGCGGTAC
CGCCCTTGGCGGTATTTGGTAACACCACGATTTGCCGGTAAATCGCCGGA
TTACCGGGACCGTCGTATACGGCGGTAAAATATCGACGGGAAAATCACCG
AACACCACCCTGATTTTTTTGGCAAACCGGAACCAAGAAACTGCAAATGC
CCGCAGCAGTAGCAGCAGCAGCGACAATGGTAACATCAACAATGACGTGA
TGTGGAGGATTCCACCAAACGAAACTACATAAAATGGAGCTGGCAACGCA
AGCGATAGATCGGAGAAACCAACTGTTCGTGCAGTGTAGGATGTGTAGAC
TCGGTCAACGTATAAGGGGACATGTGTAGAAGTGAAGATTTGAACGGCGT
TTGATACCTTGAACCTCGAGTGAACAGCGGGTGACCCGTCACACAGGGGG
TATGTCATTCACGATACAGGAACCTATTATGCCCCATGAACCAGTTAAAA
CCCCAGGGTCTCTGCAGACCGGTATCGAGCACCGTGCACCCCCAACGCCG
ACCAACCAACCACTCCAAACAAACGAACCGACAACGCAGCTGGTGATGAA
CTACCTGATCGTGGAGGGCTACCGGGACGCTGCGGAGCACTTCGTCGAGG
AATCCGGCACAGAAGCGAACGTTGACCTGGCCACCATCGAAGACAGGGTG
GCCATACGGAAGGTACGACCCTTCCAATCGCCGTGCCGGAGCACCGCTGC
TGGTGTAGCTGCTGCCGGCGTTTGTGACCGATATCAAGCACTTCGAAGTG
CGATGCGATCGGTGGGCCGTGCCCGCGTTGCCAACGCTTGCGGTCTTGTA
GGGGACCTCGTTGCGAACTCGCCAAGCACGGATCTGCGTTCTCGCGTACG
ATTCCATGCTCGATGCACGTGAAGTCGTGCCCGGTGCACGCAAGCACGAG
CAATGGGGGTTCTCTTGGAAGCTTAGGTTCATGAGGCAGGAGTTCGACTT
CCGGCGGAATGATGCTGCCGGGTAAAAGTGCGCATGGTTGGCTCTAGAGG
AGGCAGGTAGCAGGCAGGCAGGCGGGCAAGCAGATGCAAGGGGCGGGGGA
TAGGGAACCTTTGGAGAGAGAGAGTCGTCTGTGCGGCCGTGGCTCTGCGC
TCAAACGTCCACCCCAAAAGGGGTAGCTGCCGCGAAGGCGAGAGAGGAGG
AGGAGCAAAACAGAACGGTGGGGCCTTGGCTACCATCGAGAGGTGGGTGG
CCGCATCAGCAAGGCCGACGCATGCTCGCCGTCGACAGGACCGCTGGAGC
GATTCATCTTTCGTTCGCGAACAGCGTCAAACTCGTCGGAGGCATCTCTT
TTCTGTTTTCGACGCGTTCGCAACACCGAAGGGAGGAGGTTATCACTCTT
CGTTTGGGTCCAACATTTTTTCTTGGCGGCTTGCCTTGGACGGCCATGCT
TTGGATGGCGTCGTCTGTCGGTTTTGTCTCGCCTCGTCCTTTCTATCTGC
CTGCATGTCTGTCTTTCTGCCCGTGTGTCTGCCCGCCTGTCGGTCCGTCT
GTCTGGCTGTCTAGCTGTGTTTTTGCCTATCCGTCTGCCTGCCTGCCTGC
CTGCCTGCTGTCACAAATACGACGGATCGTTCCCAGGCGCGTAAGCTCAC
AAGCGAATCACCCACAACGTCATGTTGACGGCGGCAACCACGACAACGAA
CGAAACAGGCCATGATGCGAGGGGACATCGTGCAAGCCATGGAGCTGGCA
AACGACATGGATCCGACCATGCTTGACAGAGACAGGTGCGTGGGACGTCG
AAACCCAGTGTTGGTGCAGAGTGTCCAGGCGTCGCGATCGATGGGACGGG
GGTGGGGCCGGGCACCAATTCTGTAGGTAACATCTGTTCTGCAGGCGGCG
CAGGCGCGCGGACAAGTGCAGCGCTCCCAGTCGACCCACCGGCTGCGTAC
ACCCCTTCCCGGCCAATCTCCTCCGTTTCCTCTCTCGTCGGGGGACCTCA
CGATCGAAGCTATTTTTTCTTCCGGCTGGAAGTCGACCCTCTCCCCAGAG
CAGTCAGCCGCTTCAGCGCAGTCGCTCACTTCAACGCGAAGAACCACACA
CAAAAATACACACTCGGATCCACGCAGCGCGCCGGTCCCGTCCACCCCAT
CCCCCCCGCCCTCCCCCGCCCTTCCGTTTTTCTATTTAAGCGAGCTGCGT
TTTGGGCTGCTGAAGCAACGGCTGGTGGAGCTGGTTCGGCGAGGGGACTC
CGACGCGGCCCTCACCTTCGCGGCGGAACACCTCGCCCCGGAAGGAGCGG
AAAACCCCGCGGTGTTGAGGCAGATCGAGGAGGTGGTCACGCTCCTTGCA
TTCGAGGTAGCGTGTGTTTGTGCGCGTGCGTGTGGTTGGTTAGGTCAAGG
GTGCGACGATGCGCAGCGCTCCGTGTTCGTTTGTGCGCAGGCGGCTGCGG
TGCGGGGCTGGTGTGTTGCGCTGTTCGATTGCGGCTTTTTGGTTCGCTCG
TGCTGTTGTTGCCATCGTGGCCGTCGCCGGAATCGTCGTCTTCGGTTTCG
CTTGAGTTCCGCCTGCTTCGCGTGGCCGTCCTCCGCCGAATGTTTTGATG
CCCCTCTCCGCCCTCTGGTCTCCGTCTTGCCTCTTCGTTCGTCGCCTGCC
TCCTGCGTTGCGCCTTAGGATGCGGCTTCCTGTCCGCTCTCGGGGCTTTT
GGACATGGAGCAGCGGCAGGCGGCAGCCGGCCGCCTGAATGCGGCGGTGC
TGCAGAGCCAGCAGCAGGAGAAGGGGCCGTGGCTGCCCGACTTGCTCCGG
CAGCTCGTCTACACTCAGGTACGTGGACGCGTACATGCTTTCATGCTCTC
GCCGCCGCGTGCGTGTGTGACGCTTCGAACGGAAGTGCCGAGCCACGATT
CGGATGCCGGACGTTTTGGTGTAGATGGTTGGGAGACGAGGTGGTGGCTC
ATACGACTCCTGGAGCTTGCCGGAGACGTTTGCCGCTCGATGCCGATGGT
TTGCCCAATCTCAAATCGGTCGCTCGAACGCGCCCTGGTCTCTTCGCCCT
GGAGCAGTGCAGCAACACTGGTGCCGCAAGGACGCCGTTTCCAACCCTGC
GCCTTTCCCACCACTCCTCCGCAACCCCGATGAACCCACCAATCGCAGAA
CGCCCTGTCCGAGAAGGTGGAGTTCCCGCGAATAGAAGGAATAGGCGGAA
ACACGGAAGCCGGGACGGCAGAGGGTCCACGGTGACGAGACGGTATGCTC
GATGCGCGTTCCTCTGGTCAATTGGTTTGGGTGGGCGTGGAGGGGCGAGC
GGCGCCGGCGCTTGCGCAACCGCTCGCTTGCGCAACCATGGTTCATCGTG
GAGGCATCTCCTCCGCTGTCGCCGTTTAGTCTTCAGGGGTGGGGGCGGGA
CACGCATGCGGGATTGAAGCACTGGTGCGCCCTGGGGCCTTTTCCCCGTT
TTTCGTCGGCGTTTTGTATACTTCCCCGGCGCGGGGAGCGGGGCGGCGCT
TGTTTTCCACATGTGTAAGTATTCAGGCGGCAGCATCTGTAGAGCCCCTT
GTAAGCGTTCCGTGCCACCGCCGAGGGAAACAGTTTTGCTCCAACACCCC
CTAGGCTTCTTGTCGGGAGGCGGGATCTGCTCCTCGTGAGCGTTGAAAAT
GTGAATAACAAGTGACGAGTTGCTCACACAGCAGTGCCTGCGAAGACCGC
CGCTGGAAAGGTAAAAGGCACGGGGGTTTGTTTGTGCTCATGGAGAGCGC
TTGTAGGTCGACGCGAAAAGCTGCCGCACGCGTGGGTGGCAGTTGGCGTG
CGATAGGGTAGGCATGGTCCGGCCGTGGCGGCTTCCCGTGGGTCATACGT
CGTTGGTGGGTTTGATGCAGCTCGTTCGACGCTAATTTTACGATGGGGGT
GATCGTCGCGCCGAACTGCTGCCCTCCCCTTTTATGCTTCAGTGCGTGAG
AAGGCGACTGAGATCGCTTGCTTACAGCCTGTGCTGGCCTGATGACACTG
CACGTTGAGCTTCGTGTTGACGTACATCTTTGCCTCGCAAAAGCGGGAAA
AAATCCCACGGGGGGCCAGACATCCCACTCGCTTGTTTGGCACCGCTTTA
TTCGCGGCCGTTTGCCACTCTTTCCCCCTAAGATACTCACTTGACGTCGC
CTCTTCCCCGAAGAGCATTTACTTACTGTAGTCGTTCCTAGATGTAATGA
CGTATCGTGCGCGACTCAAAGTCCGCAATGACATCCTTAAGTGTGATGGC
CCAGGATTCAGATACTGAGCTTCCCGGCGAAGCGTGAAGGGAACGGCTTG
CTATTGACGGTGCATGCGCCCCCATCGCAGTAGCCATCGCGAAGGGTACT
CTGTGGATCGAAAAAGCGGCAGCTGCCCCCCCGGCACTCTGGGCTGTGGC
ATGAGATGAACTCGCAGCTCCCACCTGCGTGTCGTTATCGATGTACGGGA
AAAGTGAACCTCGGGAACGCGCAAGACGCCCTTTGCTAAAATGAGTTCTG
TGCCCAGCGTGTTATTGAGTCAGTCTACGTACGGATTCATCGCCCAGAAC
ACACTTGAGAGACGAGCGATGCGCATTTTCTCAAGTGGGTTCTATCCAAG
AGCAGGCCATCTTCTCACAACGCGCAGTCTCGTTATAGACTACACATCAA
CGTAGGACAGTCCACCGCTTCGAGAGCTTACCGTGAAGGGAAGGGTAGTC
ATCAGTCACTGCTGTGGTCTTACCTACATACAACGTCCTACCCAACTCGC
TGCGTGTAGCCTGCTACTGTAAGTAGTAGTACTCTTCATTTACCCTGGCA
AGAAGGACTTCGACAGTTCTCGAACGTGCAGGACCCCCCTGGACAGGATG
GACCATCCGCGCAGTCTGAGTACGCGCAACCGCCTCCCTGGGATGGCGCA
CACGCCCGCAAGAGTGTGGTATCAACAGGGTGTGTACGCTACAGTAGCTC
GTCAGCTGTGGTCGGGCTCGTTTTCGATTTTGACGCGGTGCGACCCTCTT
CGTGCTCGTGTGTTTTTTAAAGAAAATGGCAGTTGCTTCAGCATTGGTTG
AGGTGACCGCTTTTTCTACCGAGTATCCACAACCTGCGGAATGAAAACTC
ACTGGCAACGCGTACAGTATCGTGCACGGCTTCTTGCAATGTCTTTGTCA
GTGCGGATCCTTTGAAAACTATACTTGCAGCGATAACGCGCACACACACC
TCACACACGAACTCGCACGACACTCGCCGAGTGACGACTCCCGCATCAAC
ACCGTTGCCACCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1245:1381..7243+

>mRNA_H-canaliculatus_F_contig1245.2078.1 ID=mRNA_H-canaliculatus_F_contig1245.2078.1|Name=mRNA_H-canaliculatus_F_contig1245.2078.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1482bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1245:1381..7243+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCATTCACGATACAGGAACCTATTATGCCCCATGAACCAGTTAAAAC
CCCAGGGTCTCTGCAGACCGGTATCGAGCACCGTGCACCCCCAACGCCGA
CCAACCAACCACTCCAAACAAACGAACCGACAACGCAGCTGGTGATGAAC
TACCTGATCGTGGAGGGCTACCGGGACGCTGCGGAGCACTTCGTCGAGGA
ATCCGGCACAGAAGCGAACGTTGACCTGGCCACCATCGAAGACAGGGTGG
CCATACGGAAGATGTCATTCACGATACAGGAACCTATTATGCCCCATGAA
CCAGTTAAAACCCCAGGGTCTCTGCAGACCGGTATCGAGCACCGTGCACC
CCCAACGCCGACCAACCAACCACTCCAAACAAACGAACCGACAACGCAGC
TGGTGATGAACTACCTGATCGTGGAGGGCTACCGGGACGCTGCGGAGCAC
TTCGTCGAGGAATCCGGCACAGAAGCGAACGTTGACCTGGCCACCATCGA
AGACAGGGTGGCCATACGGAAGGCCATGATGCGAGGGGACATCGTGCAAG
CCATGGAGCTGGCAAACGACATGGATCCGACCATGCTTGACAGAGACAGG
CCATGATGCGAGGGGACATCGTGCAAGCCATGGAGCTGGCAAACGACATG
GATCCGACCATGCTTGACAGAGACAGCGAGCTGCGTTTTGGGCTGCTGAA
GCAACGGCTGGTGGAGCTGGTTCGGCGAGGGGACTCCGACGCGGCCCTCA
CCTTCGCGGCGGAACACCTCGCCCCGGAAGGAGCGGAAAACCCCGCGGTG
TTGAGGCAGATCGAGGAGGTGGTCACGCTCCTTGCATTCGAGCGAGCTGC
GTTTTGGGCTGCTGAAGCAACGGCTGGTGGAGCTGGTTCGGCGAGGGGAC
TCCGACGCGGCCCTCACCTTCGCGGCGGAACACCTCGCCCCGGAAGGAGC
GGAAAACCCCGCGGTGTTGAGGCAGATCGAGGAGGTGGTCACGCTCCTTG
CATTCGAGGATGCGGCTTCCTGTCCGCTCTCGGGGCTTTTGGACATGGAG
CAGCGGCAGGCGGCAGCCGGCCGCCTGAATGCGGCGGTGCTGCAGAGCCA
GCAGCAGGAGAAGGGGCCGTGGCTGCCCGACTTGCTCCGGCAGCTCGTCT
ACACTCAGGATGCGGCTTCCTGTCCGCTCTCGGGGCTTTTGGACATGGAG
CAGCGGCAGGCGGCAGCCGGCCGCCTGAATGCGGCGGTGCTGCAGAGCCA
GCAGCAGGAGAAGGGGCCGTGGCTGCCCGACTTGCTCCGGCAGCTCGTCT
ACACTCAGAACGCCCTGTCCGAGAAGGTGGAGTTCCCGCGAATAGAAGGA
ATAGGCGGAAACACGGAAGCCGGGACGGCAGAGGGTCCACGGTGAAACGC
CCTGTCCGAGAAGGTGGAGTTCCCGCGAATAGAAGGAATAGGCGGAAACA
CGGAAGCCGGGACGGCAGAGGGTCCACGGTGA
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