mRNA_H-canaliculatus_F_contig12445.2076.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12445.2076.1
Unique NamemRNA_H-canaliculatus_F_contig12445.2076.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12445.2076.1 vs. uniprot
Match: A0A6H5K0G0_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G0_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 5.200e-27
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    4 ERRRAVKAGQWGDAIFKHETVVRPDILMSVMRQGYRVLWTDVDIVWLGNPLPLLP 168
            ER RAVKAGQWGD IFKHETVVRPDIL+S+M QGY+VLWTDVDIVWLGNPLPLLP
Sbjct: 1279 ERHRAVKAGQWGDEIFKHETVVRPDILLSIMAQGYKVLWTDVDIVWLGNPLPLLP 1333
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BLAST of mRNA_H-canaliculatus_F_contig12445.2076.1 vs. uniprot
Match: D8LU02_ECTSI (Xylosyltransferase, family GT77 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU02_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.300e-18
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    4 ERRRAVKAGQWGDAIFKHETVVRPDILMSVMRQGYRVLWTDVDIVWLGNPLPLLP 168
            ER  A++AGQWGD IFK +TV RPDIL+ ++RQGY+ L+TDVDI WLGN L LLP
Sbjct:  339 ERAHAIQAGQWGDNIFKQQTVARPDILLPILRQGYKALYTDVDIFWLGNVLSLLP 393
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BLAST of mRNA_H-canaliculatus_F_contig12445.2076.1 vs. uniprot
Match: A0A3L6EDG1_MAIZE (Beta-arabinofuranosyltransferase RAY1 n=5 Tax=Zea mays TaxID=4577 RepID=A0A3L6EDG1_MAIZE)

HSP 1 Score: 51.6 bits (122), Expect = 3.800e-6
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   34 WGDAIFKHETVVRPDILMSVMRQGYRVLWTDVDIVWLGNPLPLL 165
            +G   F+  T V+  I++ ++R GY VL +DVDI W GNP+PLL
Sbjct:  490 FGTKCFQQVTKVKSRIVLEILRLGYNVLLSDVDIYWFGNPMPLL 533
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BLAST of mRNA_H-canaliculatus_F_contig12445.2076.1 vs. uniprot
Match: A0A4U5MZZ0_POPAL (Nucleotid_trans domain-containing protein (Fragment) n=2 Tax=Populus alba TaxID=43335 RepID=A0A4U5MZZ0_POPAL)

HSP 1 Score: 50.4 bits (119), Expect = 7.160e-6
Identity = 20/44 (45.45%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   34 WGDAIFKHETVVRPDILMSVMRQGYRVLWTDVDIVWLGNPLPLL 165
            +G A F+  T V+  ++  +++ GY VL +DVD+ W GNPLPLL
Sbjct:   46 FGTACFQRVTKVKSRMVWKILKLGYNVLLSDVDVYWFGNPLPLL 89
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BLAST of mRNA_H-canaliculatus_F_contig12445.2076.1 vs. uniprot
Match: A0A4U5MB13_POPAL (Nucleotid_trans domain-containing protein n=3 Tax=Populus alba TaxID=43335 RepID=A0A4U5MB13_POPAL)

HSP 1 Score: 50.4 bits (119), Expect = 9.620e-6
Identity = 20/44 (45.45%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   34 WGDAIFKHETVVRPDILMSVMRQGYRVLWTDVDIVWLGNPLPLL 165
            +G A F+  T V+  ++  +++ GY VL +DVD+ W GNPLPLL
Sbjct:  261 FGTACFQRVTKVKSRMVWKILKLGYNVLLSDVDVYWFGNPLPLL 304
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BLAST of mRNA_H-canaliculatus_F_contig12445.2076.1 vs. uniprot
Match: A0A6M2F676_9ROSI (Nucleotid_trans domain-containing protein n=1 Tax=Populus davidiana TaxID=266767 RepID=A0A6M2F676_9ROSI)

HSP 1 Score: 50.4 bits (119), Expect = 9.650e-6
Identity = 20/44 (45.45%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   34 WGDAIFKHETVVRPDILMSVMRQGYRVLWTDVDIVWLGNPLPLL 165
            +G A F+  T V+  ++  +++ GY VL +DVD+ W GNPLPLL
Sbjct:  261 FGTACFQRVTKVKSRMVWKILKLGYNVLLSDVDVYWFGNPLPLL 304
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BLAST of mRNA_H-canaliculatus_F_contig12445.2076.1 vs. uniprot
Match: A0A2P6R146_ROSCH (Putative fucosylgalactoside 3-alpha-galactosyltransferase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R146_ROSCH)

HSP 1 Score: 50.1 bits (118), Expect = 1.330e-5
Identity = 19/44 (43.18%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   34 WGDAIFKHETVVRPDILMSVMRQGYRVLWTDVDIVWLGNPLPLL 165
            +G   F+  T V+  +++ +++ GY VL +DVD+ W GNPLPLL
Sbjct:  475 FGTKCFQKVTKVKSRMVLKILKMGYNVLLSDVDVYWFGNPLPLL 518
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BLAST of mRNA_H-canaliculatus_F_contig12445.2076.1 vs. uniprot
Match: UPI000D094561 (transcription elongation regulator 1 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI000D094561)

HSP 1 Score: 50.1 bits (118), Expect = 1.340e-5
Identity = 19/44 (43.18%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   34 WGDAIFKHETVVRPDILMSVMRQGYRVLWTDVDIVWLGNPLPLL 165
            +G   F+  T V+  +++ +++ GY VL +DVD+ W GNPLPLL
Sbjct: 1402 FGTKCFQKVTKVKSRMVLKILKMGYNVLLSDVDVYWFGNPLPLL 1445
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BLAST of mRNA_H-canaliculatus_F_contig12445.2076.1 vs. uniprot
Match: A0A1R3IC05_9ROSI (Reticulon n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3IC05_9ROSI)

HSP 1 Score: 49.7 bits (117), Expect = 1.800e-5
Identity = 19/44 (43.18%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   34 WGDAIFKHETVVRPDILMSVMRQGYRVLWTDVDIVWLGNPLPLL 165
            +G   F+  T V+  +++ +++ GY VL +DVD+ W GNPLPLL
Sbjct:  105 FGTKCFQRVTKVKSRMVLKILKLGYNVLLSDVDVYWFGNPLPLL 148
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12445.2076.1 vs. uniprot
Match: A0A1R3I700_COCAP (Reticulon n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3I700_COCAP)

HSP 1 Score: 49.7 bits (117), Expect = 1.830e-5
Identity = 19/44 (43.18%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   34 WGDAIFKHETVVRPDILMSVMRQGYRVLWTDVDIVWLGNPLPLL 165
            +G   F+  T V+  +++ +++ GY VL +DVD+ W GNPLPLL
Sbjct:  494 FGTKCFQRVTKVKSRMVLKILKLGYNVLLSDVDVYWFGNPLPLL 537
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12445.2076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0G0_9PHAE5.200e-2789.09Nucleotid_trans domain-containing protein n=1 Tax=... [more]
D8LU02_ECTSI2.300e-1867.27Xylosyltransferase, family GT77 n=1 Tax=Ectocarpus... [more]
A0A3L6EDG1_MAIZE3.800e-647.73Beta-arabinofuranosyltransferase RAY1 n=5 Tax=Zea ... [more]
A0A4U5MZZ0_POPAL7.160e-645.45Nucleotid_trans domain-containing protein (Fragmen... [more]
A0A4U5MB13_POPAL9.620e-645.45Nucleotid_trans domain-containing protein n=3 Tax=... [more]
A0A6M2F676_9ROSI9.650e-645.45Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A2P6R146_ROSCH1.330e-543.18Putative fucosylgalactoside 3-alpha-galactosyltran... [more]
UPI000D0945611.340e-543.18transcription elongation regulator 1 n=1 Tax=Rosa ... [more]
A0A1R3IC05_9ROSI1.800e-543.18Reticulon n=1 Tax=Corchorus olitorius TaxID=93759 ... [more]
A0A1R3I700_COCAP1.830e-543.18Reticulon n=1 Tax=Corchorus capsularis TaxID=21014... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12445contigH-canaliculatus_F_contig12445:168..335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue2.3e-15
Seed eggNOG ortholog2880.D8LU02
KEGG koko:K11714,ko:K20784
KEGG Pathwayko00514,map00514
GOsGO:0000003,GO:0000271,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008378,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009664,GO:0009832,GO:0009856,GO:0009987,GO:0010306,GO:0010383,GO:0010393,GO:0010396,GO:0012505,GO:0016043,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0016763,GO:0017144,GO:0019538,GO:0022414,GO:0032501,GO:0032502,GO:0033692,GO:0034637,GO:0034645,GO:0035250,GO:0035252,GO:0036211,GO:0042285,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044706,GO:0045229,GO:0045488,GO:0045489,GO:0048856,GO:0048868,GO:0051704,GO:0052325,GO:0052546,GO:0070085,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.rhamnogalacturonan II biosynthetic process
EggNOG OGs28KPY@1,2QT5X@2759
COG Functional cat.M
CAZyGT77
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.2122896-CDS-H-canaliculatus_F_contig12445:167..3351622928960.2122896-CDS-H-canaliculatus_F_contig12445:167..335Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12445 168..335 -
1696845630.5582423-CDS-H-canaliculatus_F_contig12445:167..3351696845630.5582423-CDS-H-canaliculatus_F_contig12445:167..335Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12445 168..335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12445.2076.1prot_H-canaliculatus_F_contig12445.2076.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12445 168..335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12445.2076.1

>prot_H-canaliculatus_F_contig12445.2076.1 ID=prot_H-canaliculatus_F_contig12445.2076.1|Name=mRNA_H-canaliculatus_F_contig12445.2076.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=56bp
QERRRAVKAGQWGDAIFKHETVVRPDILMSVMRQGYRVLWTDVDIVWLGN
PLPLLP
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mRNA from alignment at H-canaliculatus_F_contig12445:168..335-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12445.2076.1 ID=mRNA_H-canaliculatus_F_contig12445.2076.1|Name=mRNA_H-canaliculatus_F_contig12445.2076.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=168bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12445:168..335- (Hapterophycus canaliculatus Oshoro5f female)
CAGGAGAGGCGCCGCGCCGTCAAGGCCGGCCAGTGGGGGGACGCCATCTT
CAAGCACGAGACCGTCGTCCGGCCGGACATCCTCATGTCCGTCATGAGGC
AGGGCTACAGGGTCCTGTGGACCGACGTCGACATCGTCTGGCTCGGAAAC
CCCTTGCCCCTGCTGCCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12445:168..335-

>mRNA_H-canaliculatus_F_contig12445.2076.1 ID=mRNA_H-canaliculatus_F_contig12445.2076.1|Name=mRNA_H-canaliculatus_F_contig12445.2076.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12445:168..335- (Hapterophycus canaliculatus Oshoro5f female)
CAGGAGAGGCGCCGCGCCGTCAAGGCCGGCCAGTGGGGGGACGCCATCTT
CAAGCACGAGACCGTCGTCCGGCCGGACATCCTCATGTCCGTCATGAGGC
AGGGCTACAGGGTCCTGTGGACCGACGTCGACATCGTCTGGCTCGGAAAC
CCCTTGCCCCTGCTGCCTCAGGAGAGGCGCCGCGCCGTCAAGGCCGGCCA
GTGGGGGGACGCCATCTTCAAGCACGAGACCGTCGTCCGGCCGGACATCC
TCATGTCCGTCATGAGGCAGGGCTACAGGGTCCTGTGGACCGACGTCGAC
ATCGTCTGGCTCGGAAACCCCTTGCCCCTGCTGCCT
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