mRNA_H-canaliculatus_F_contig12430.2070.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12430.2070.1
Unique NamemRNA_H-canaliculatus_F_contig12430.2070.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12430.2070.1 vs. uniprot
Match: D8LKC4_ECTSI (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKC4_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.180e-33
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:   49 MAEDEASLGKMMEEIETNLPRFDQCINLLKTEISEIKAGKHDDRLREVISRPVPDPALHSALSGAVEGGLSLPAAPRLSE 288
            M EDEA+LGKMMEEIETNLPRFDQCI+LL+ EI EIKAGKHD RLREV + PVPDP LHSAL+ AVEGGL LPAAPRLS+
Sbjct:    1 MEEDEAALGKMMEEIETNLPRFDQCISLLQAEIGEIKAGKHDHRLREVAAMPVPDPNLHSALTSAVEGGLQLPAAPRLSD 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12430.2070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKC4_ECTSI1.180e-3381.25Bromo domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12430contigH-canaliculatus_F_contig12430:214..1634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue3.5e-28
Seed eggNOG ortholog2880.D8LKC4
KEGG koko:K02606,ko:K11348,ko:K11380
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
EggNOG free text desc.chromatin organization
EggNOG OGsCOG5141@1,KOG0955@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size302
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12430.2070.1prot_H-canaliculatus_F_contig12430.2070.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12430 214..1586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928959.37573-CDS-H-canaliculatus_F_contig12430:213..3851622928959.37573-CDS-H-canaliculatus_F_contig12430:213..385Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12430 214..385 -
1696845630.1407282-CDS-H-canaliculatus_F_contig12430:213..3851696845630.1407282-CDS-H-canaliculatus_F_contig12430:213..385Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12430 214..385 -
1622928959.3974783-CDS-H-canaliculatus_F_contig12430:1345..14091622928959.3974783-CDS-H-canaliculatus_F_contig12430:1345..1409Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12430 1346..1409 -
1696845630.1595306-CDS-H-canaliculatus_F_contig12430:1345..14091696845630.1595306-CDS-H-canaliculatus_F_contig12430:1345..1409Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12430 1346..1409 -
1622928959.4097726-CDS-H-canaliculatus_F_contig12430:1570..15861622928959.4097726-CDS-H-canaliculatus_F_contig12430:1570..1586Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12430 1571..1586 -
1696845630.1696882-CDS-H-canaliculatus_F_contig12430:1570..15861696845630.1696882-CDS-H-canaliculatus_F_contig12430:1570..1586Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12430 1571..1586 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928959.4244866-UTR-H-canaliculatus_F_contig12430:1586..16341622928959.4244866-UTR-H-canaliculatus_F_contig12430:1586..1634Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12430 1587..1634 -
1696845630.1822183-UTR-H-canaliculatus_F_contig12430:1586..16341696845630.1822183-UTR-H-canaliculatus_F_contig12430:1586..1634Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12430 1587..1634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12430.2070.1

>prot_H-canaliculatus_F_contig12430.2070.1 ID=prot_H-canaliculatus_F_contig12430.2070.1|Name=mRNA_H-canaliculatus_F_contig12430.2070.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=84bp
MAEDEASLGKMMEEIETNLPRFDQCINLLKTEISEIKAGKHDDRLREVIS
RPVPDPALHSALSGAVEGGLSLPAAPRLSEGESE
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mRNA from alignment at H-canaliculatus_F_contig12430:214..1634-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12430.2070.1 ID=mRNA_H-canaliculatus_F_contig12430.2070.1|Name=mRNA_H-canaliculatus_F_contig12430.2070.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1421bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12430:214..1634- (Hapterophycus canaliculatus Oshoro5f female)
GCCTGAAGCTGGCAGTGGTCTACGCCGCGTGTCTGCGCCTCATTGGCCAT
GGCAGAGGACGAAGGTAGGCGTTACATCTCTGCTGTGTTTCATTGTCCCG
AGCGCTCGCGACGAAGTATAGATTCTCGAATACCGCACGTGTGTTAGAGG
GAGGAGAGGCGTTGCCAAAAAGTCACCTTCGTTTCACCTCCGATGGTCCG
CTCGTTCGTGTACGGTGTTTTGCAGCATCACTGGGCAAGATGATGGAGGA
GATCGAGACCAACCTGCCCAGATTCGACCAGTGCATCAAGTGAGATTCAT
GTTGCGACGTTGTAGCAGGAAACCCAGGAGCACGCGCACCCGGGTATATC
AAACTTTTAGACACACGCCCGCCCATAATTCGAAATTCCGCTCGAGAATT
CTCTTCCAAAATATTGAAATTTGCGCTTGCGTCCAAGAGTACATCTGGCT
GTTCATAACTTGTAGGGCCCGTAAATCGGGGCGTCATAGCAGCATTGGTG
CAGTATGTTGGGAGAGATTATCTTGCGAGCTGGACTCATTCGCGTCTTCT
TCTTCGTCCAGATGCACCTACTAGTAATATGGACCATTGATACGACCCTT
GTTCCTAATCATGCCGAAGTAAATGTCGCGAAGAAAACAAAAAATGCCGG
TGGGTCCTTTCTTCCTTCCCATCATAACTCAAATACAGAGTACCAGGCCC
TGTTTGCATTGTACGACCCTCTGATCGAGTAGACTGCCGTTACAGATTGA
CATCATCGTCTTGCACATTTTCTCCGGAGCGGATGGCAGCATGTTTTGCT
GTTGCCATCTTCTAAACCGCCGGGGACTGCCTATGCTGATTGGGCGTCGT
AGTTCAACACGTGTGCGAAGAAATGATGTGCGACCTTTGTTCCCGTACCA
TGAGCGCATTGAACCGGAGGTACTTCTTCGTCCGCACACCTTATCTGTGG
GCGCCAACCCTCCCTTCGCACGCCTATTCAGCAAATGCAGTGCAATTATC
CCGAAACGCGCCCTCGTCCGGCATGTCAACCTTTAGCTTATTCTCTAGCC
AAATGCTGGGCTAACCCGAAAAATCCTCGACCGTCGTGCGACACAGAGAG
CCGACACTGCCGACAACAGGTGAAATACCGCTGCTGTAGCTGCTGTAGCT
TGTGCCGCGTACCATCAGACGTGCCGCCGGCGCTGTGTCCCGCCCACGAC
CAAACACAACAAACACATACGAAATAAAACCTTTTTCATTAAAAAACAGC
TTGCTGAAGACGGAGATCAGCGAGATCAAGGCCGGGAAGCACGACGACCG
CCTCCGCGAGGTGATTTCCAGGCCAGTGCCAGACCCCGCCCTCCACTCCG
CCCTGTCCGGCGCCGTGGAGGGCGGCCTTTCTCTCCCTGCGGCGCCTAGG
CTCAGCGAAGGCGAGAGCGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12430:214..1634-

>mRNA_H-canaliculatus_F_contig12430.2070.1 ID=mRNA_H-canaliculatus_F_contig12430.2070.1|Name=mRNA_H-canaliculatus_F_contig12430.2070.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=504bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12430:214..1634- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCAGAGGACGAAGATGGCAGAGGACGAAGCATCACTGGGCAAGATGA
TGGAGGAGATCGAGACCAACCTGCCCAGATTCGACCAGTGCATCAACATC
ACTGGGCAAGATGATGGAGGAGATCGAGACCAACCTGCCCAGATTCGACC
AGTGCATCAACTTGCTGAAGACGGAGATCAGCGAGATCAAGGCCGGGAAG
CACGACGACCGCCTCCGCGAGGTGATTTCCAGGCCAGTGCCAGACCCCGC
CCTCCACTCCGCCCTGTCCGGCGCCGTGGAGGGCGGCCTTTCTCTCCCTG
CGGCGCCTAGGCTCAGCGAAGGCGAGAGCGAGCTTGCTGAAGACGGAGAT
CAGCGAGATCAAGGCCGGGAAGCACGACGACCGCCTCCGCGAGGTGATTT
CCAGGCCAGTGCCAGACCCCGCCCTCCACTCCGCCCTGTCCGGCGCCGTG
GAGGGCGGCCTTTCTCTCCCTGCGGCGCCTAGGCTCAGCGAAGGCGAGAG
CGAG
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