mRNA_H-canaliculatus_F_contig1243.2065.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1243.2065.1
Unique NamemRNA_H-canaliculatus_F_contig1243.2065.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1243.2065.1 vs. uniprot
Match: D8LSN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN0_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 5.430e-78
Identity = 108/142 (76.06%), Postives = 119/142 (83.80%), Query Frame = 1 
Query:    7 LTAFVASLIGVEGRYPQDALRCLASLKEPDGLLICPEHRNVYCVKEVSTLGREDCGRTSYFGDKWNSQTGKCEYRKCEKTCEESSWDFEFEGEAYERNRFCCDFDNCNGTRRRFARPGLAAWIPGVVAFLLAQAHRREQQAG 432
            + A VA L  V  RYPQDALRCLASLKEP+GLLICPEHRN YCVKEVS L  EDCGRT+YFGDKWN+QTGKCEYRKCE TC ESSWDFEFEGEAYERNRFCCDF+ CNG  RRF+R G++AW+ GVVA LL   + RE+QAG
Sbjct:    1 MVAAVALLPEVNARYPQDALRCLASLKEPEGLLICPEHRNGYCVKEVSDLAEEDCGRTTYFGDKWNAQTGKCEYRKCEATCLESSWDFEFEGEAYERNRFCCDFNYCNGISRRFSRAGMSAWVSGVVALLLTLLYLREEQAG 142
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BLAST of mRNA_H-canaliculatus_F_contig1243.2065.1 vs. uniprot
Match: A0A482UVN1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UVN1_9ARCH)

HSP 1 Score: 57.0 bits (136), Expect = 3.370e-8
Identity = 21/48 (43.75%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:  217 KCEYRKCEKTCEESSWDFEFEGEAYERNRFCCDFDNCNGTRRRFARPG 360
            +C+++KC  TCEE +++F+FEG  Y R+R+CC+ D CN   R +   G
Sbjct:    4 ECQFKKCSDTCEEETYNFDFEGRTYTRSRYCCNTDFCNAGSRSYGTMG 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1243.2065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSN0_ECTSI5.430e-7876.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482UVN1_9ARCH3.370e-843.75Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1243contigH-canaliculatus_F_contig1243:19032..21053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_002280.1
Exons4
Model size435
Cds size435
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1243.2065.1prot_H-canaliculatus_F_contig1243.2065.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1243 19032..21053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928959.255858-CDS-H-canaliculatus_F_contig1243:19031..191531622928959.255858-CDS-H-canaliculatus_F_contig1243:19031..19153Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 19032..19153 +
1696845630.095092-CDS-H-canaliculatus_F_contig1243:19031..191531696845630.095092-CDS-H-canaliculatus_F_contig1243:19031..19153Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 19032..19153 +
1622928959.2696903-CDS-H-canaliculatus_F_contig1243:20010..200971622928959.2696903-CDS-H-canaliculatus_F_contig1243:20010..20097Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 20011..20097 +
1696845630.1042914-CDS-H-canaliculatus_F_contig1243:20010..200971696845630.1042914-CDS-H-canaliculatus_F_contig1243:20010..20097Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 20011..20097 +
1622928959.2961154-CDS-H-canaliculatus_F_contig1243:20326..204481622928959.2961154-CDS-H-canaliculatus_F_contig1243:20326..20448Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 20327..20448 +
1696845630.1121593-CDS-H-canaliculatus_F_contig1243:20326..204481696845630.1121593-CDS-H-canaliculatus_F_contig1243:20326..20448Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 20327..20448 +
1622928959.3195984-CDS-H-canaliculatus_F_contig1243:20949..210531622928959.3195984-CDS-H-canaliculatus_F_contig1243:20949..21053Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 20950..21053 +
1696845630.1202242-CDS-H-canaliculatus_F_contig1243:20949..210531696845630.1202242-CDS-H-canaliculatus_F_contig1243:20949..21053Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 20950..21053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1243.2065.1

>prot_H-canaliculatus_F_contig1243.2065.1 ID=prot_H-canaliculatus_F_contig1243.2065.1|Name=mRNA_H-canaliculatus_F_contig1243.2065.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=145bp
IFLTAFVASLIGVEGRYPQDALRCLASLKEPDGLLICPEHRNVYCVKEVS
TLGREDCGRTSYFGDKWNSQTGKCEYRKCEKTCEESSWDFEFEGEAYERN
RFCCDFDNCNGTRRRFARPGLAAWIPGVVAFLLAQAHRREQQAG*
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mRNA from alignment at H-canaliculatus_F_contig1243:19032..21053+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1243.2065.1 ID=mRNA_H-canaliculatus_F_contig1243.2065.1|Name=mRNA_H-canaliculatus_F_contig1243.2065.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2022bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1243:19032..21053+ (Hapterophycus canaliculatus Oshoro5f female)
ATTTTCCTGACCGCGTTCGTGGCTTCGCTGATTGGTGTGGAAGGCAGATA
TCCACAAGACGCTCTCCGTTGCCTGGCTTCCTTGAAGGAGCCGGACGGGC
TCCTGATTTGCCCAGAACATAGGTTCGGCCATGTGGCTACGATTTGGATC
CTTGGTGGGGGATGATGAGTGTGGTTCGAGAGGACGTGTTTGCTGTGTCT
TCTATCGGCCATGGTTGTGATGTTGACGGAACGCCCTCTAGGCTACAAAC
ACTTGATACGAGATCCAAAGTTTTGAGTGTTTAATCCAACAGGGGCAACT
CACAGATCGCTCGCCCACGAAGTAGTTACATCATGAATTCGATGCCCAGC
CACAGAAACCATTTTAATAATATTATATGTCTGGTTGGTCTGCCACGTCC
TTGCATCCTGGCCCTTCATATCTACAATGCGTGGTGGGTCGTAAGCGGCA
GCTGTGTAGCAACGATATCTGACTGGAAGAGAATAATCCATGCACCCGGG
GTAGAGCACATCAACCCTGCCAGACTCTTCCCCCGCCTTTGTCTCCCGAC
TTTACGGAGTCGACGACATGTTTGTCGAGAAACCAAGACACGTCTTCACA
CAGGGTAGTGGGTGATGACGCACAATTCAACCACGCATGGGACTCGCGGG
GACTAAGAGCACGCATGCAGTGCTACTTTGGCTGGTCTGCACGAGACAAC
TCTGGCTTCACGAGTCTGACTGGCTCATTTGTACAAGTATCAGAAAGATA
CTTTCAAGGAAGGTGCTTCGGGCGATCGTCTTTTACGCCGGACGAGATTG
ACACTGAAGTAGACTGAAGAACACCATCCACGGGGGCGGGTTGCTGTTGG
AGTCTGAACACACAGACAGGTCGTTGGGTTGTGACCTGCTTGCTTTCGCG
TTGACACCGGGTGTATCCTGTTCTCATATTTAATGTACATACACCTGACT
TTTGTCTGCGCTTTAATGGTCCAGCACAGGAACGTGTACTGCGTGAAGGA
GGTATCGACATTAGGGCGAGAGGATTGCGGCCGAACGAGCTACTTCGGGG
ACAAGTGGAACTCTCAGTGAGGATGGTCCACGGCTCAGTCGTTCCCCTTA
TACCCCATCGATGTTGCTAATGTTCGTTCGGATGTCCGCGGGCCCCTTCT
CTTGTCTCGGACCTTTTCATGTTGAGTTACTGAACGAAAGCTACAGTCAG
TAAAAAAATCGATATTCCGGCAAGAGTTTGTCGGTTCATCTTTCAACGCT
TCGTTCGCCCACTTCCCCTCGAACGCGAACAAACCCCGACCACAGGACCG
GCAAGTGTGAGTACCGCAAATGCGAGAAAACTTGCGAAGAATCAAGCTGG
GACTTCGAGTTCGAAGGCGAGGCGTACGAGAGAAACAGATTCTGCTGCGA
CTTCGACAATTGCAACGGTCTGCACGTACTTGCTGTCGTTGACGTGTGTT
TGTTGCCGTTGGTGAAAAAGTAGTCTGGCATCTCCAGGAGCACGATGAAG
GCTACTCGTAAAACCTCAAGTCTTCAACAAGCCATGACGAGCTTGTGCTG
CGAAGAGTCGCGGTCTGGCGCACAGCTACAGCGTGATGACGATTAAAGTG
ACTGATTGCACGTGGCACACGCCCATGCAAGATAGTACTCTTCGAGTTGA
CAGTGTACCCAGGAAAGACGGAGAAAGAAGCGTAGAAACAAAAATCAGAT
CGGCCGTGAAGCACAATAATAGCCGAAGAGGAAGACGAAGAAGACTGCGT
TTTCCGTGCCGCACAGCTTAATGTTCGACCTCCTGCTCACACCCGTACGC
ATGCAAGCATGCGCACATGCATATGCGGAAACGCATGCTGCCCACGCGTT
GCTCCCTGCATGCTGTTGACTGAGCAACTACGGCGCCGCCTGCACTTTGC
GCCCAACGCCTTGCTCAGGTACGCGACGACGGTTTGCGAGACCTGGCCTG
GCGGCGTGGATCCCCGGAGTTGTAGCCTTCCTTCTAGCACAAGCGCATCG
CAGAGAGCAGCAAGCTGGATAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1243:19032..21053+

>mRNA_H-canaliculatus_F_contig1243.2065.1 ID=mRNA_H-canaliculatus_F_contig1243.2065.1|Name=mRNA_H-canaliculatus_F_contig1243.2065.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=870bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1243:19032..21053+ (Hapterophycus canaliculatus Oshoro5f female)
ATTTTCCTGACCGCGTTCGTGGCTTCGCTGATTGGTGTGGAAGGCAGATA
TCCACAAGACGCTCTCCGTTGCCTGGCTTCCTTGAAGGAGCCGGACGGGC
TCCTGATTTGCCCAGAACATAGATTTTCCTGACCGCGTTCGTGGCTTCGC
TGATTGGTGTGGAAGGCAGATATCCACAAGACGCTCTCCGTTGCCTGGCT
TCCTTGAAGGAGCCGGACGGGCTCCTGATTTGCCCAGAACATAGGAACGT
GTACTGCGTGAAGGAGGTATCGACATTAGGGCGAGAGGATTGCGGCCGAA
CGAGCTACTTCGGGGACAAGTGGAACTCTCAGAACGTGTACTGCGTGAAG
GAGGTATCGACATTAGGGCGAGAGGATTGCGGCCGAACGAGCTACTTCGG
GGACAAGTGGAACTCTCAGACCGGCAAGTGTGAGTACCGCAAATGCGAGA
AAACTTGCGAAGAATCAAGCTGGGACTTCGAGTTCGAAGGCGAGGCGTAC
GAGAGAAACAGATTCTGCTGCGACTTCGACAATTGCAACGGACCGGCAAG
TGTGAGTACCGCAAATGCGAGAAAACTTGCGAAGAATCAAGCTGGGACTT
CGAGTTCGAAGGCGAGGCGTACGAGAGAAACAGATTCTGCTGCGACTTCG
ACAATTGCAACGGTACGCGACGACGGTTTGCGAGACCTGGCCTGGCGGCG
TGGATCCCCGGAGTTGTAGCCTTCCTTCTAGCACAAGCGCATCGCAGAGA
GCAGCAAGCTGGATAAGTACGCGACGACGGTTTGCGAGACCTGGCCTGGC
GGCGTGGATCCCCGGAGTTGTAGCCTTCCTTCTAGCACAAGCGCATCGCA
GAGAGCAGCAAGCTGGATAA
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