mRNA_H-canaliculatus_F_contig1243.2061.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1243.2061.1
Unique NamemRNA_H-canaliculatus_F_contig1243.2061.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1243.2061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1243contigH-canaliculatus_F_contig1243:1146..4483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1239
Cds size837
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1243.2061.1prot_H-canaliculatus_F_contig1243.2061.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1243 1146..4081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928958.4703033-CDS-H-canaliculatus_F_contig1243:1145..13641622928958.4703033-CDS-H-canaliculatus_F_contig1243:1145..1364Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 1146..1364 -
1696845629.7757614-CDS-H-canaliculatus_F_contig1243:1145..13641696845629.7757614-CDS-H-canaliculatus_F_contig1243:1145..1364Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 1146..1364 -
1622928958.485936-CDS-H-canaliculatus_F_contig1243:3463..40811622928958.485936-CDS-H-canaliculatus_F_contig1243:3463..4081Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 3464..4081 -
1696845629.7889142-CDS-H-canaliculatus_F_contig1243:3463..40811696845629.7889142-CDS-H-canaliculatus_F_contig1243:3463..4081Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1243 3464..4081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928958.5064297-UTR-H-canaliculatus_F_contig1243:4081..44831622928958.5064297-UTR-H-canaliculatus_F_contig1243:4081..4483Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1243 4082..4483 -
1696845629.7982779-UTR-H-canaliculatus_F_contig1243:4081..44831696845629.7982779-UTR-H-canaliculatus_F_contig1243:4081..4483Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1243 4082..4483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1243.2061.1

>prot_H-canaliculatus_F_contig1243.2061.1 ID=prot_H-canaliculatus_F_contig1243.2061.1|Name=mRNA_H-canaliculatus_F_contig1243.2061.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=279bp
MRKAKSTARGAQQDQLMPPLQSSSPSSAVLVATALLLGCAGSALPGAAAA
AASVTPAASSGAPLRRSGPHSREEREPLLPPLAPLAPRGGVGAGRTARPS
WFVARTTRGGGLFRRRRNGGGSDGGGGGDSIPADVAAEEHKGEEGEEEEE
EEEATGGDKEEPQESSSEGFTVAAGTTGGSGRGGSLVEGGGTQDGVDGGG
SQSDEQPVPHVPPIPSAGGIRGAQASDSDDDEDGGSSSSSEEEIVDVAGG
SREEGEDEEEGRGSVEGAVGDEQQQDEEG
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mRNA from alignment at H-canaliculatus_F_contig1243:1146..4483-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1243.2061.1 ID=mRNA_H-canaliculatus_F_contig1243.2061.1|Name=mRNA_H-canaliculatus_F_contig1243.2061.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3338bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1243:1146..4483- (Hapterophycus canaliculatus Oshoro5f female)
GGCTGGAGTCGTGGGTGTCTTCCATCTTACTTCGAGCATTTCTTCTGGAG
TCCAGACGGTTAGTTCACTCCGTTGCTCTGCGGCACTATACCACTCTTCG
CTCTTGGATTTCGTGTTTGGGTTCAAGGTTCCAGGTACAACCAGGTAAAC
GCGCATTATCCGGTATCGGGTCCATTCGGCCAATGGCGTGGCTCGGTTCG
GCGCAGTTGTTTCCAAGAGAGGTTCTCCCGCGTTTTCCTATCCACCGCTC
CTCTACGTGACCTCCATGTCTCAACACCGTTTTTGCTAGCTACATTTCCC
TCTGGCGCACTCAAAGGTACGGCGCGCGCAACATAAGCTCAGACGCGCTA
CTTGCACGCTGAGCACCCTCTGGGGGGGTTGACCTTGGAGATTGGAGGTA
GGATGCGGAAAGCGAAATCGACGGCCCGTGGTGCCCAGCAGGACCAGCTC
ATGCCGCCGTTGCAGTCATCCTCCCCGAGTTCGGCCGTCCTAGTGGCGAC
CGCTCTCTTGCTTGGATGCGCCGGCTCTGCTCTGCCGGGAGCAGCGGCGG
CAGCAGCGAGCGTCACACCAGCCGCTTCCTCCGGGGCGCCGCTTCGACGG
TCCGGCCCGCACAGTCGAGAAGAACGGGAGCCCTTATTGCCGCCGTTGGC
GCCGTTGGCGCCACGCGGCGGCGTCGGTGCAGGCCGCACCGCCCGCCCAT
CCTGGTTCGTTGCTCGGACCACCCGCGGCGGAGGGCTGTTCCGGAGACGC
AGGAATGGCGGCGGCAGCGATGGTGGTGGTGGTGGCGACAGTATCCCGGC
CGATGTGGCTGCCGAGGAACATAAGGGCGAGGAAGGGGAGGAGGAGGAGG
AGGAGGAGGAGGCAACGGGAGGCGATAAGGAAGAGCCGCAGGAGTCGAGC
AGCGAGGGCTTTACGGTTGCGGCGGGAACGACCGGAGGCAGCGGGCGCGG
TGGCTCCTTGGTCGAGGGAGGGGGTACACAGGACGGGGTGGACGGAGGAG
GGAGTCAGAGCGACGAGCAGGTGTGCCCTCGCGTGCGTGTCTGTGCGCTT
TGTATGCTAGGTGTCTTGCCTGCGGCTGCTGTGTCCTCGAGCTGCAGTAG
CAGCTAGATGGGATGTCGTGCGCTGGAGAGTGAGCGGGCCGTTCGGATCC
GCAGCGAAGCACCCGGGATACATGAAAACTGGGTCCCCTCTTTTACCCCC
CATCCAACATCAAACGCGCAGCTGGAGCTACGGTAGGGAGAGCGGACTTC
TAGAAGAACGGGTACATGAATAGTCGAGATCCGCTGCTCTCAGAATCATG
TCAACCTTGAAGCAGCGGTAGCAGTACTGAGTGTTGAGGTTTTCATGAAA
TGTTTCTCAAGGTGTTATTGAACGTTGAACGTTCTCAGGTTCGAGGCGGT
AACCTCTCTCCGTTGTTCTCTTGTCGGAAACTCTGAAACGCCTCATCAGC
TGTAAATACGCTGTACTTGTATCAGGGGTTGCTTGTGCATGAACGACGGT
GCAAAGGGTGGACGAGCATAAAGACCTTAACACACAGATAAAATGTAAGC
AGCAGACCATGCGGGCAAAGCGGGACGCTACTCTATACGGAGATACGGAG
TATATCATACCTTACATAGCACGGGGCATGAAGTACGGAGTATCGTATAG
TCGCAGTCTACAAGTTTCTTAAAATGCCGTGTTGGTGTGCACCTCGCTAT
TGTTCATTCGTTGTCTTGGTGCGGCTCGATGTCCATACTTGTAAAACATC
AGATATCCCGCACGGGGTATGAAACGAACTCCAGTTTATGCGAGTGAATA
AAAAAGCTGGCGTGATACTTTTTTTTGCGCTTGCACGCCTGTCATGAAAA
GAGAAAGAACGGCAGATCGCGTGGTCATCAGGCTCAGGCTCTGTTGTCTG
CGGTCGACCGGTCCATGACGAGACACGATCAGAAGCAGGCCGCTCCCTCT
GCTGCTGGTAAACTTCAGGGGTTTCTCGTTGGCACGGTAGCAGGGGCGAT
CTCCGCTCACACACAAACACCCACACCCATGTCTCGATCCACGCGCCACG
TAGACACAGCAGCACGGAGTGCTCTGCTGGAGCCTCGCTTGATCCATCTT
TTCAGTGTGCCTGGGGTGTCCTGAAGAAAAACGCACGACACCAAGCTACA
CGTGTCGACTTCGTGGGCTGCTGCATACCTGGTGCCTGGTAGTCTGCCGC
ACGCAGGCTTACAAACATATGCGTAGAGCACTAGTCGGACCGTACGTGTA
TAAGCGGCGCTTTCGGCTCGCACAGACAGCGCGAGAGAGGCATTTTGCGC
ATCTTTTCTTCATCCGGCGTGTTCGTTTGAAGTCAAGGGGGCAGTAGTCC
TCACCACACGATCGCGCGGCCTGTGCAGCGCGGTCGCGGCCCTTACACAG
GGGATTTCGCAGCCAGAGTCTCGCGGCCTCCTGCCTCGAAGCAAGCAGTG
TGTCTGTCTCCGGCAGCCGCCGCCTCCAACCCTCGCTGTAGTGAATCCAG
TAGACACCCTCCAGGTTCTTGCCTCAGAATGTGGTATTCCAGTCTTTTTT
CGCTCTTGTTTTTGAGAGACTCTTGTTTGGCATGAGGCGTCTGGCTTCCC
TACTCTAGGTCGACAACCAATGTCGATAGCACATGGCGAGCTGCATGGCC
TGAAGAAGCGCAGCGTTTCTGACCGACGTCTTCCTTATTTTTTTGGCGCC
CGGCGGCGTCCTATTTTTCGTCGTTTTGTGTTGGTGTTTCGAGGCCCATG
TACTCAACCGCCAAGTTTTCAAGTCTTCTATACGGTCCACATGCGCAGTC
CAGCCACACGCCCAGACCTGGCGTCGTCTCACGCAGATTAAAAGCTTCCC
ATGCTCGCGTTCGGATTGCGAGCTTAAAAATCACGCACCGGCTTCTGCGT
TGCAGGATTTATTCCACCACCCTTGACCGCTTACGTTACATTTGTGACCA
AGGGCCGTTTGTTCTGCCTACACTCTCGACGACCAAATGGTGATTGTTTC
AACGCCCTCGAAGAGGCTCACTGTGCCCTAGAATGCAAGTGCGCTTAGAG
CGGCCAGAAGAGCAACCGAACGCGTGGTGTGGTGCCCCCTCCCCCCCTCC
TCTCCCATCGCACCGCCAGCCCGTTCCGCATGTGCCACCAATCCCGAGTG
CTGGTGGAATCCGAGGAGCCCAGGCGAGTGACAGTGACGACGATGAGGAC
GGCGGCAGCAGCAGCAGTTCGGAAGAAGAGATCGTGGACGTCGCGGGCGG
CTCGCGGGAGGAGGGAGAAGATGAAGAAGAAGGAAGGGGCTCCGTGGAGG
GGGCGGTAGGAGACGAGCAGCAACAAGATGAGGAGGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1243:1146..4483-

>mRNA_H-canaliculatus_F_contig1243.2061.1 ID=mRNA_H-canaliculatus_F_contig1243.2061.1|Name=mRNA_H-canaliculatus_F_contig1243.2061.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1674bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1243:1146..4483- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGGAAAGCGAAATCGACGGCCCGTGGTGCCCAGCAGGACCAGCTCAT
GCCGCCGTTGCAGTCATCCTCCCCGAGTTCGGCCGTCCTAGTGGCGACCG
CTCTCTTGCTTGGATGCGCCGGCTCTGCTCTGCCGGGAGCAGCGGCGGCA
GCAGCGAGCGTCACACCAGCCGCTTCCTCCGGGGCGCCGCTTCGACGGTC
CGGCCCGCACAGTCGAGAAGAACGGGAGCCCTTATTGCCGCCGTTGGCGC
CGTTGGCGCCACGCGGCGGCGTCGGTGCAGGCCGCACCGCCCGCCCATCC
TGGTTCGTTGCTCGGACCACCCGCGGCGGAGGGCTGTTCCGGAGACGCAG
GAATGGCGGCGGCAGCGATGGTGGTGGTGGTGGCGACAGTATCCCGGCCG
ATGTGGCTGCCGAGGAACATAAGGGCGAGGAAGGGGAGGAGGAGGAGGAG
GAGGAGGAGGCAACGGGAGGCGATAAGGAAGAGCCGCAGGAGTCGAGCAG
CGAGGGCTTTACGGTTGCGGCGGGAACGACCGGAGGCAGCGGGCGCGGTG
GCTCCTTGGTCGAGGGAGGGGGTACACAGGACGGGGTGGACGGAGGAGGG
AGTCAGAGCGACGAGCAGATGCGGAAAGCGAAATCGACGGCCCGTGGTGC
CCAGCAGGACCAGCTCATGCCGCCGTTGCAGTCATCCTCCCCGAGTTCGG
CCGTCCTAGTGGCGACCGCTCTCTTGCTTGGATGCGCCGGCTCTGCTCTG
CCGGGAGCAGCGGCGGCAGCAGCGAGCGTCACACCAGCCGCTTCCTCCGG
GGCGCCGCTTCGACGGTCCGGCCCGCACAGTCGAGAAGAACGGGAGCCCT
TATTGCCGCCGTTGGCGCCGTTGGCGCCACGCGGCGGCGTCGGTGCAGGC
CGCACCGCCCGCCCATCCTGGTTCGTTGCTCGGACCACCCGCGGCGGAGG
GCTGTTCCGGAGACGCAGGAATGGCGGCGGCAGCGATGGTGGTGGTGGTG
GCGACAGTATCCCGGCCGATGTGGCTGCCGAGGAACATAAGGGCGAGGAA
GGGGAGGAGGAGGAGGAGGAGGAGGAGGCAACGGGAGGCGATAAGGAAGA
GCCGCAGGAGTCGAGCAGCGAGGGCTTTACGGTTGCGGCGGGAACGACCG
GAGGCAGCGGGCGCGGTGGCTCCTTGGTCGAGGGAGGGGGTACACAGGAC
GGGGTGGACGGAGGAGGGAGTCAGAGCGACGAGCAGCCCGTTCCGCATGT
GCCACCAATCCCGAGTGCTGGTGGAATCCGAGGAGCCCAGGCGAGTGACA
GTGACGACGATGAGGACGGCGGCAGCAGCAGCAGTTCGGAAGAAGAGATC
GTGGACGTCGCGGGCGGCTCGCGGGAGGAGGGAGAAGATGAAGAAGAAGG
AAGGGGCTCCGTGGAGGGGGCGGTAGGAGACGAGCAGCAACAAGATGAGG
AGGGCCCCGTTCCGCATGTGCCACCAATCCCGAGTGCTGGTGGAATCCGA
GGAGCCCAGGCGAGTGACAGTGACGACGATGAGGACGGCGGCAGCAGCAG
CAGTTCGGAAGAAGAGATCGTGGACGTCGCGGGCGGCTCGCGGGAGGAGG
GAGAAGATGAAGAAGAAGGAAGGGGCTCCGTGGAGGGGGCGGTAGGAGAC
GAGCAGCAACAAGATGAGGAGGGC
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