mRNA_H-canaliculatus_F_contig12427.2060.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12427.2060.1
Unique NamemRNA_H-canaliculatus_F_contig12427.2060.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12427.2060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12427contigH-canaliculatus_F_contig12427:445..1482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size340
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12427.2060.1prot_H-canaliculatus_F_contig12427.2060.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12427 460..1482 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928958.387755-UTR-H-canaliculatus_F_contig12427:444..4591622928958.387755-UTR-H-canaliculatus_F_contig12427:444..459Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12427 445..459 +
1696845629.745795-UTR-H-canaliculatus_F_contig12427:444..4591696845629.745795-UTR-H-canaliculatus_F_contig12427:444..459Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12427 445..459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928958.4057677-CDS-H-canaliculatus_F_contig12427:459..5381622928958.4057677-CDS-H-canaliculatus_F_contig12427:459..538Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12427 460..538 +
1696845629.7556608-CDS-H-canaliculatus_F_contig12427:459..5381696845629.7556608-CDS-H-canaliculatus_F_contig12427:459..538Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12427 460..538 +
1622928958.423473-CDS-H-canaliculatus_F_contig12427:1237..14821622928958.423473-CDS-H-canaliculatus_F_contig12427:1237..1482Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12427 1238..1482 +
1696845629.7650118-CDS-H-canaliculatus_F_contig12427:1237..14821696845629.7650118-CDS-H-canaliculatus_F_contig12427:1237..1482Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12427 1238..1482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12427.2060.1

>prot_H-canaliculatus_F_contig12427.2060.1 ID=prot_H-canaliculatus_F_contig12427.2060.1|Name=mRNA_H-canaliculatus_F_contig12427.2060.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=108bp
MGGVERAREAAGRAVGGKGGGSGKERIAYRPRRSAAATAPHTSRTALPLS
TSGGSGSGGSSNGGTDARVSPFPSSGASASPAASAAVAAAAAAGATAGPS
QRTSPPPL
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mRNA from alignment at H-canaliculatus_F_contig12427:445..1482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12427.2060.1 ID=mRNA_H-canaliculatus_F_contig12427.2060.1|Name=mRNA_H-canaliculatus_F_contig12427.2060.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1038bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12427:445..1482+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCGTGGCGACGAGATGGGCGGGGTGGAGAGGGCGCGGGAGGCCGCCGG
CAGGGCGGTCGGCGGAAAAGGCGGCGGCTCCGGCAAGGAGAGAAGTGGGT
CACTTTTTCAGCGTTTTTTCTTTCGTGTTTGGGGCTAGTTTTCGTTTCGC
TTGCGGCGGTGTTCGTCACGAGTACAATCTTCTAGGATTGACGGCTCTTC
CGGCGTTTCCCATTTTTAGGAAAAGGAATCAACAATACCAAAGGAAGACC
CTCCTGAGACAAGTTAGAGCGACTTGGGGGGATTGTGTCGAGCTCCTTAC
AGTAAGGGTTCAGTATAGTGGATAGACATCTTATGCGCGTCGGATGAAAG
ATGGCGGGCGACACACGCACAAGGCGCATTGTGATCCTTCCTGTCATGAG
GCGCCATTATGGTCCGGTTGGCGGCGCGCTTGTGTCTTTTACGACCCTAG
GATGGCGGGGAGGCAGATTGATTTCTACACAACCATGCCGTGGTTCCGAC
CGTAAGAGCAGGCATAGCTCGCGTTTCGAGATCGTGTTGGTTGTTGCGCC
CGCTAGGGGGGCGAGGGAGAGGTGGGTCGGTGAGCCCTCCGCGTGCGCGT
GCCTGTGAGCGCATGGGCTCCCGCAGGGAAAGCGCCCTTCGCATGGTTCG
TCAGCTTATTCCGAAGCGCTCCGATCACGTTTGGCAGAATGCGGAGGTTA
AAAATCGTGCTCCACCGAAGCTGTCCAGGCAACCAAACACTTTCGTTCGT
CTCACCCCCTTCACTTCAAACCGCTCCAACTCCCTTCCCGCAGTCGCTTA
CCGCCCACGGCGATCGGCGGCGGCGACAGCGCCTCACACATCCCGAACGG
CCTTACCGTTGTCGACGAGCGGCGGCAGCGGGAGCGGCGGGAGCAGCAAT
GGTGGGACAGATGCAAGGGTTTCTCCTTTCCCCTCTTCCGGTGCCTCTGC
CTCCCCTGCCGCTTCCGCCGCCGTCGCCGCCGCTGCTGCTGCTGGAGCAA
CAGCAGGCCCCTCGCAGCGGACCTCACCGCCGCCCCTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12427:445..1482+

>mRNA_H-canaliculatus_F_contig12427.2060.1 ID=mRNA_H-canaliculatus_F_contig12427.2060.1|Name=mRNA_H-canaliculatus_F_contig12427.2060.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12427:445..1482+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCGGGGTGGAGAGGGCGCGGGAGGCCGCCGGCAGGGCGGTCGGCGG
AAAAGGCGGCGGCTCCGGCAAGGAGAGAAATGGGCGGGGTGGAGAGGGCG
CGGGAGGCCGCCGGCAGGGCGGTCGGCGGAAAAGGCGGCGGCTCCGGCAA
GGAGAGAATCGCTTACCGCCCACGGCGATCGGCGGCGGCGACAGCGCCTC
ACACATCCCGAACGGCCTTACCGTTGTCGACGAGCGGCGGCAGCGGGAGC
GGCGGGAGCAGCAATGGTGGGACAGATGCAAGGGTTTCTCCTTTCCCCTC
TTCCGGTGCCTCTGCCTCCCCTGCCGCTTCCGCCGCCGTCGCCGCCGCTG
CTGCTGCTGGAGCAACAGCAGGCCCCTCGCAGCGGACCTCACCGCCGCCC
CTTTCGCTTACCGCCCACGGCGATCGGCGGCGGCGACAGCGCCTCACACA
TCCCGAACGGCCTTACCGTTGTCGACGAGCGGCGGCAGCGGGAGCGGCGG
GAGCAGCAATGGTGGGACAGATGCAAGGGTTTCTCCTTTCCCCTCTTCCG
GTGCCTCTGCCTCCCCTGCCGCTTCCGCCGCCGTCGCCGCCGCTGCTGCT
GCTGGAGCAACAGCAGGCCCCTCGCAGCGGACCTCACCGCCGCCCCTT
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