mRNA_H-canaliculatus_F_contig12421.2057.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12421.2057.1
Unique NamemRNA_H-canaliculatus_F_contig12421.2057.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12421.2057.1 vs. uniprot
Match: A0A6H5K768_9PHAE (FPL domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K768_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.110e-37
Identity = 133/213 (62.44%), Postives = 140/213 (65.73%), Query Frame = 1 
Query:    1 MFWKSVPGVPWAGPSPRGSNGVGVGGNKARGANAR-------RRQLAPEPYSLGHLRVLFQRLIDAQEGRVEGETTVVETLRAISEVVVYGENQDAKLAARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADSTLPQEEVRRLTPSSRAEMDAGGVFGEGGRG--KGGAGSKGRVGXXXXXDLAPPPVLKGLTVTDVRREDAFFELF 612
            MFW+SVP VPWAGPSPRGSN                      R+Q APEPYSLGHLRVLFQRLIDAQEG+VEGETTVVETLRAISEVVVYGENQDAKL+ARAA    XXXXXXXXXXXXXXXXXXXXXXXXXXXX                +         V G G R   KG  GS G          +PPPVL+GLT TDVRREDAFFELF
Sbjct:   52 MFWRSVPSVPWAGPSPRGSNXXXXXXXXXXXXXXXXXXXXXXRKQQAPEPYSLGHLRVLFQRLIDAQEGKVEGETTVVETLRAISEVVVYGENQDAKLSARAAAKAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAA---------VEGSGTRPPPKGAEGSPGEF----TPGNSPPPVLEGLT-TDVRREDAFFELF 250
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BLAST of mRNA_H-canaliculatus_F_contig12421.2057.1 vs. uniprot
Match: D7FXA6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA6_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 2.900e-35
Identity = 66/84 (78.57%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:    1 MFWKSVPGVPWAGPSPRGSNG------VGVGGNKARGANARRRQLAPEPYSLGHLRVLFQRLIDAQEGRVEGETTVVETLRAIS 234
            MFW+SVP VPWAGPSPRGSN       VG GG  A+G NA+R+Q APEPYSLGHLRVLFQRLIDAQEGRVEGETTVVETLRA S
Sbjct:    1 MFWRSVPSVPWAGPSPRGSNNGAGGGAVGAGGRHAKGGNAQRKQQAPEPYSLGHLRVLFQRLIDAQEGRVEGETTVVETLRAAS 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12421.2057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K768_9PHAE1.110e-3762.44FPL domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FXA6_ECTSI2.900e-3578.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12421contigH-canaliculatus_F_contig12421:68..2808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_004640.1
Exons3
Model size618
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12421.2057.1prot_H-canaliculatus_F_contig12421.2057.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12421 68..2808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.7821794-CDS-H-canaliculatus_F_contig12421:67..2931622928957.7821794-CDS-H-canaliculatus_F_contig12421:67..293Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12421 68..293 +
1696845629.637453-CDS-H-canaliculatus_F_contig12421:67..2931696845629.637453-CDS-H-canaliculatus_F_contig12421:67..293Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12421 68..293 +
1622928957.7958877-CDS-H-canaliculatus_F_contig12421:1016..12291622928957.7958877-CDS-H-canaliculatus_F_contig12421:1016..1229Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12421 1017..1229 +
1696845629.6513827-CDS-H-canaliculatus_F_contig12421:1016..12291696845629.6513827-CDS-H-canaliculatus_F_contig12421:1016..1229Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12421 1017..1229 +
1622928957.807592-CDS-H-canaliculatus_F_contig12421:2629..28081622928957.807592-CDS-H-canaliculatus_F_contig12421:2629..2808Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12421 2630..2808 +
1696845629.6606827-CDS-H-canaliculatus_F_contig12421:2629..28081696845629.6606827-CDS-H-canaliculatus_F_contig12421:2629..2808Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12421 2630..2808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12421.2057.1

>prot_H-canaliculatus_F_contig12421.2057.1 ID=prot_H-canaliculatus_F_contig12421.2057.1|Name=mRNA_H-canaliculatus_F_contig12421.2057.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=206bp
MFWKSVPGVPWAGPSPRGSNGVGVGGNKARGANARRRQLAPEPYSLGHLR
VLFQRLIDAQEGRVEGETTVVETLRAISEVVVYGENQDAKLAARAAAKAQ
EEQEHEQEEAAAAAAAAAAAAAAAAAAAVADSTLPQEEVRRLTPSSRAEM
DAGGVFGEGGRGKGGAGSKGRVGGGGGGDLAPPPVLKGLTVTDVRREDAF
FELFW*
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mRNA from alignment at H-canaliculatus_F_contig12421:68..2808+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12421.2057.1 ID=mRNA_H-canaliculatus_F_contig12421.2057.1|Name=mRNA_H-canaliculatus_F_contig12421.2057.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2741bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12421:68..2808+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTTTGGAAATCCGTCCCCGGCGTGCCCTGGGCGGGGCCATCCCCCCG
GGGAAGTAACGGTGTCGGCGTCGGCGGCAACAAGGCGAGAGGTGCCAACG
CCCGAAGGCGACAGCTGGCGCCCGAGCCCTACTCGCTGGGACACCTGAGA
GTGCTCTTCCAGCGGTTGATCGACGCCCAGGAGGGGAGGGTGGAGGGAGA
GACGACCGTGGTGGAGACGCTGAGAGGTGGGTCGATCGGTCGGCTCGTCA
CCCGCTCGTGGTTGGCGCGAGGGATTACGGGCGCGATGCGTGATGACTTT
CGTTGGGTCAGGGGCTTGGGGTGGAGGTTCGGGTCTCCTTGTGGTGCGAT
CGTGCTGGTGTTGCTGCTGCTGGTGTTGCTGCTGCTGCTGGTGCTGTTGC
TGCTGCTGCAACGGCTACTGCCACTGCTGCTTCCATTACTGCGGTTACCG
CCGCTGCCGCTACGAGTCATCTCGTTGCCGTTCCCTATCTCCAAGTGGGC
ATTTTGTCCCCTTTTTCTGCATCGGACCACTCTGTTGGTCTCCCCTGCAG
GCAAACGACACACACTCAAACCACGCAATCTTCTTTCTACTGGCAATATT
TGATTGTCCATGATTCCTGGCATCTGACACGTGAACGGTGACCTCTGCAT
GGCAACGAGGTTTCTGCGGCCATTGGTTAGAGCTACTCGCTCTTGACGCC
TTTGGACTCTCCTCTCCCCCCCTCTCCCTCTCTCGCTCCCGCTCCCGCTC
CCCCCGGCCTACCTGCTTGCTTCTCTCCTATTCACTGTCGACCGTGTTGC
GACCACTACCTTGTTGTAGTCATTGCTGCCGTAGCATTGCCGTCTCTTGC
CTTGCCGCACGCAAAAAATCTCAAGTCGACGCCTTGTCTCTCGACTTTCT
CGCTCTTTTTGTTGGCGTCTTCGTTCGCCGGCGTGGTTGCCACCTTCAGC
TATCTCGGAGGTGGTTGTGTACGGCGAGAATCAGGACGCCAAACTGGCCG
CAAGAGCGGCTGCGAAGGCTCAGGAGGAGCAGGAGCACGAGCAGGAGGAG
GCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCGCTGCTGC
CGCCGCTGTCGCTGATTCCACCTTGCCGCAGGAAGAGGTGAGACGCCTGA
CGCCGAGTAGTCGTTTGAAGGTTGATGCCAGCCGACGAAATCCCTCCTCG
TTCTCGAGGCAAATCGCAAAGCTTCGCCCTGGAAGAAGGAAAAACGAGAG
GGTGTCGGCACGCCAGATAATGCCTCCTGGGCAGAGACACACGGCACCCG
GCGGTGTCGTCTGAGCCACGGGGCTGTCTGCGCGAGCAAGCCGGCACCGC
CCTCCATCCGAAGCCAAGAACTAGAGAAGATAAAAGAAGGCGTCGCCGTA
CCTTGGCGAGCCCCAGTCCTGTCGGCTGTGGCGTTGCGCTGGTGGCTTGC
CCGACACACACCGGCAAGGTGCCTGTGCAACCGATTCGTTGTTTGGGTTC
GTCCTGGAGCAAGTGCCTACCCTTGCGTCGCCCCCGCCTCTCCCCCTCCC
GCCTCTCCCGATGGAAACGCCTCGCGTTGGACAGGTGCTGACTCGAAATC
GTGCTGGTTTGATGTTCTTCGATGATTCCTCCCTTAACTGTCTCTTTTCT
TTCTTGTTGCATCTATCATATGATATCTGTTAGCGTTTTGGTTTTCTTTT
GTTCCCCCTTTTCTTATTCATTTATTGTTTCTCTCTTCCAGGCTGCGGTA
GGAATAAGACACGAACACTGTGCTTCCCTCGGTGCCCCTGCATACAGCAT
CAACACAGCGCAGAGCAGCAGCGCTCTTTCCACGAAAACAACAGCAATCC
TAGTAACGACTGTCACAGTAGACAGCAATCCGACGGTCAGGTCAAGGTGA
CATGCCGTTCCTAGGGATAAACCTAGGCAGCTCCCGAGTCTGGTACAAAA
TATCCACCTTCGCTGCAAATACGCGTCGGCAATACAGGGCCAAGCACGAA
GGGGGCAGGAACTTTGATCGACGGACCGTTTGAAAATTCTGTCCACTGCT
CAAAGGGGTTGTCGAACTACCTCGTGGTACGCACCTAACTCACTACCAGC
AGCGGGCAAAATCGTCGCAGAACCCCTTTAGACACGGGATGGTCGGCGGC
GGCGGTCGCGGCCGCGGCCGCGATGTTGCCGAGCCCCCCCCCGTCATCGC
CTGCCTCGCGTTTTCCTCGCGGCATGTGCCCCCGGGACGCCGGATGTAAT
TTCCCCCCACGACGTGTGCGACGTGCGCGATCGCACTGCTTGCCGCGGCT
CGCATTGCTGGCGCCAACTGCTGCGCTTCACCGAGCCACACGTGACCGCC
CCTCGCCACCGCTGTGCCCCGCCGAAACTACCCTCGTTGTTCGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGACGGAGGCAGACGGC
GCCGCCCCCATCACCGTCGCCAGCGGCGCCGGTCTCCGGGGGCCCCGGAG
CCGCAGGGCAACGAGCCCCAAAAGGCCGCTGCCAACGACCCCCACGAGAC
CGCCGGCCAAAGGCGCCGAGATGGATGCGGGCGGCGTCTTCGGAGAAGGA
GGGAGAGGGAAGGGGGGTGCCGGAAGCAAAGGGCGTGTCGGCGGCGGCGG
CGGCGGCGACTTGGCGCCTCCGCCCGTGTTGAAGGGGTTGACAGTGACGG
ACGTTCGGAGAGAGGATGCGTTTTTCGAGCTGTTCTGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12421:68..2808+

>mRNA_H-canaliculatus_F_contig12421.2057.1 ID=mRNA_H-canaliculatus_F_contig12421.2057.1|Name=mRNA_H-canaliculatus_F_contig12421.2057.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1236bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12421:68..2808+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTTTGGAAATCCGTCCCCGGCGTGCCCTGGGCGGGGCCATCCCCCCG
GGGAAGTAACGGTGTCGGCGTCGGCGGCAACAAGGCGAGAGGTGCCAACG
CCCGAAGGCGACAGCTGGCGCCCGAGCCCTACTCGCTGGGACACCTGAGA
GTGCTCTTCCAGCGGTTGATCGACGCCCAGGAGGGGAGGGTGGAGGGAGA
GACGACCGTGGTGGAGACGCTGAGAGATGTTTTGGAAATCCGTCCCCGGC
GTGCCCTGGGCGGGGCCATCCCCCCGGGGAAGTAACGGTGTCGGCGTCGG
CGGCAACAAGGCGAGAGGTGCCAACGCCCGAAGGCGACAGCTGGCGCCCG
AGCCCTACTCGCTGGGACACCTGAGAGTGCTCTTCCAGCGGTTGATCGAC
GCCCAGGAGGGGAGGGTGGAGGGAGAGACGACCGTGGTGGAGACGCTGAG
AGCTATCTCGGAGGTGGTTGTGTACGGCGAGAATCAGGACGCCAAACTGG
CCGCAAGAGCGGCTGCGAAGGCTCAGGAGGAGCAGGAGCACGAGCAGGAG
GAGGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCGCTGC
TGCCGCCGCTGTCGCTGATTCCACCTTGCCGCAGGAAGAGGTGAGACGCC
TGACGCCGAGTAGTCCTATCTCGGAGGTGGTTGTGTACGGCGAGAATCAG
GACGCCAAACTGGCCGCAAGAGCGGCTGCGAAGGCTCAGGAGGAGCAGGA
GCACGAGCAGGAGGAGGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG
CCGCTGCCGCTGCTGCCGCCGCTGTCGCTGATTCCACCTTGCCGCAGGAA
GAGGTGAGACGCCTGACGCCGAGTAGTCGCGCCGAGATGGATGCGGGCGG
CGTCTTCGGAGAAGGAGGGAGAGGGAAGGGGGGTGCCGGAAGCAAAGGGC
GTGTCGGCGGCGGCGGCGGCGGCGACTTGGCGCCTCCGCCCGTGTTGAAG
GGGTTGACAGTGACGGACGTTCGGAGAGAGGATGCGTTTTTCGAGCTGTT
CTGGTGAGCGCCGAGATGGATGCGGGCGGCGTCTTCGGAGAAGGAGGGAG
AGGGAAGGGGGGTGCCGGAAGCAAAGGGCGTGTCGGCGGCGGCGGCGGCG
GCGACTTGGCGCCTCCGCCCGTGTTGAAGGGGTTGACAGTGACGGACGTT
CGGAGAGAGGATGCGTTTTTCGAGCTGTTCTGGTGA
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