mRNA_H-canaliculatus_F_contig1242.2054.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1242.2054.1
Unique NamemRNA_H-canaliculatus_F_contig1242.2054.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1242.2054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1242contigH-canaliculatus_F_contig1242:13042..13375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.08915-UTR-H-canaliculatus_F_contig1242:13041..130661622928957.08915-UTR-H-canaliculatus_F_contig1242:13041..13066Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1242 13042..13066 +
1696845629.2568998-UTR-H-canaliculatus_F_contig1242:13041..130661696845629.2568998-UTR-H-canaliculatus_F_contig1242:13041..13066Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1242 13042..13066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.1086855-CDS-H-canaliculatus_F_contig1242:13066..133751622928957.1086855-CDS-H-canaliculatus_F_contig1242:13066..13375Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1242 13067..13375 +
1696845629.2710054-CDS-H-canaliculatus_F_contig1242:13066..133751696845629.2710054-CDS-H-canaliculatus_F_contig1242:13066..13375Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1242 13067..13375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1242.2054.1prot_H-canaliculatus_F_contig1242.2054.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1242 13067..13375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1242.2054.1

>prot_H-canaliculatus_F_contig1242.2054.1 ID=prot_H-canaliculatus_F_contig1242.2054.1|Name=mRNA_H-canaliculatus_F_contig1242.2054.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
METCLCVRACVAFNYMYLRVRFLDKCGLKRTSRLVCRWSTRVQRPRVRTR
LKRASTPPFRELSPTLPYTHRRANGATGLTHASRCPLFSFASVSCDLCCT
ASA
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mRNA from alignment at H-canaliculatus_F_contig1242:13042..13375+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1242.2054.1 ID=mRNA_H-canaliculatus_F_contig1242.2054.1|Name=mRNA_H-canaliculatus_F_contig1242.2054.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=334bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1242:13042..13375+ (Hapterophycus canaliculatus Oshoro5f female)
GGTACGTGTGCGTTGCTACGGAAATATGGAAACCTGCCTGTGTGTTCGTG
CCTGTGTCGCGTTCAATTATATGTATCTCCGGGTGCGGTTTTTGGATAAA
TGCGGCTTGAAACGCACTTCTAGGCTTGTCTGCCGCTGGTCGACCCGTGT
GCAGCGGCCCCGTGTCCGCACCCGCCTGAAGCGCGCATCGACTCCGCCAT
TCCGCGAGCTCTCTCCTACCCTGCCCTACACCCATCGACGTGCAAACGGA
GCAACCGGGCTTACGCATGCGAGTCGGTGTCCGCTGTTCAGCTTCGCCTC
TGTTTCGTGCGACTTGTGCTGCACCGCTTCGGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1242:13042..13375+

>mRNA_H-canaliculatus_F_contig1242.2054.1 ID=mRNA_H-canaliculatus_F_contig1242.2054.1|Name=mRNA_H-canaliculatus_F_contig1242.2054.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1242:13042..13375+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAAACCTGCCTGTGTGTTCGTGCCTGTGTCGCGTTCAATTATATGTA
TCTCCGGGTGCGGTTTTTGGATAAATGCGGCTTGAAACGCACTTCTAGGC
TTGTCTGCCGCTGGTCGACCCGTGTGCAGCGGCCCCGTGTCCGCACCCGC
CTGAAGCGCGCATCGACTCCGCCATTCCGCGAGCTCTCTCCTACCCTGCC
CTACACCCATCGACGTGCAAACGGAGCAACCGGGCTTACGCATGCGAGTC
GGTGTCCGCTGTTCAGCTTCGCCTCTGTTTCGTGCGACTTGTGCTGCACC
GCTTCGGCTATGGAAACCTGCCTGTGTGTTCGTGCCTGTGTCGCGTTCAA
TTATATGTATCTCCGGGTGCGGTTTTTGGATAAATGCGGCTTGAAACGCA
CTTCTAGGCTTGTCTGCCGCTGGTCGACCCGTGTGCAGCGGCCCCGTGTC
CGCACCCGCCTGAAGCGCGCATCGACTCCGCCATTCCGCGAGCTCTCTCC
TACCCTGCCCTACACCCATCGACGTGCAAACGGAGCAACCGGGCTTACGC
ATGCGAGTCGGTGTCCGCTGTTCAGCTTCGCCTCTGTTTCGTGCGACTTG
TGCTGCACCGCTTCGGCT
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