mRNA_H-canaliculatus_F_contig1240.2037.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1240.2037.1
Unique NamemRNA_H-canaliculatus_F_contig1240.2037.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1240.2037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1240contigH-canaliculatus_F_contig1240:1506..3590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_000430.1
Exons3
Model size753
Cds size753
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1240.2037.1prot_H-canaliculatus_F_contig1240.2037.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1240 1506..3590 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928955.2110078-CDS-H-canaliculatus_F_contig1240:1505..16001622928955.2110078-CDS-H-canaliculatus_F_contig1240:1505..1600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1240 1506..1600 +
1696845628.4890819-CDS-H-canaliculatus_F_contig1240:1505..16001696845628.4890819-CDS-H-canaliculatus_F_contig1240:1505..1600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1240 1506..1600 +
1622928955.2224178-CDS-H-canaliculatus_F_contig1240:2812..28591622928955.2224178-CDS-H-canaliculatus_F_contig1240:2812..2859Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1240 2813..2859 +
1696845628.4981377-CDS-H-canaliculatus_F_contig1240:2812..28591696845628.4981377-CDS-H-canaliculatus_F_contig1240:2812..2859Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1240 2813..2859 +
1622928955.245578-CDS-H-canaliculatus_F_contig1240:2979..35901622928955.245578-CDS-H-canaliculatus_F_contig1240:2979..3590Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1240 2980..3590 +
1696845628.5078626-CDS-H-canaliculatus_F_contig1240:2979..35901696845628.5078626-CDS-H-canaliculatus_F_contig1240:2979..3590Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1240 2980..3590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1240.2037.1

>prot_H-canaliculatus_F_contig1240.2037.1 ID=prot_H-canaliculatus_F_contig1240.2037.1|Name=mRNA_H-canaliculatus_F_contig1240.2037.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=251bp
MDTIDQSTQIKAWHRSQASQERERQHILGVLREFERRTPQRHAQGSESSP
ATAASATATIAAAAAAAAAAAAAAQLHHRPRASVSPTLPRRGSSPRSGNG
MRRRREGNLDRSSPRSAAAVSRPAAEAGGDGGLPWRGNEGRGTTSATAPA
LGSSQNRGRAGTGTAATGRASARREEGEEGRCSSSSYGVYSPVDIRSAGR
GATGESFGLGSPPTGVLLFHEEPGDYSPQRPRAFWREEWHGECSGSGSGG
G
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mRNA from alignment at H-canaliculatus_F_contig1240:1506..3590+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1240.2037.1 ID=mRNA_H-canaliculatus_F_contig1240.2037.1|Name=mRNA_H-canaliculatus_F_contig1240.2037.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2085bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1240:1506..3590+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACACCATCGACCAGTCTACGCAGATCAAGGCATGGCACCGGTCGCA
GGCTAGCCAAGAGCGAGAGAGGCAGCACATCCTTGGCGTACTGAGGTGAG
GATTGGCTTGTTCGCGTCTGCTCGTAAACTCCAACTTCAAAAAACCAAAT
GACGACGTTAAGACGTCAAGTTCTGTCTCCGCACACCCACCCTACGCCCG
TGAGCGTGGAGGCATCTCATGCTGCTGTGCTGGGCCATCCTGACGTCTAG
TCTTCTGGACGGGCATCGTTCCTTCTTCAACCTGCCCGGAGGGTGGCTAA
ACAGTTCGACATCGTGGCAAGGCTGCCTTCGTACACGACGCTCTGATTCT
CCTCTTCTTCCGTGTTCCCCTTCGTTTCGGGAAGGAAGGGGACAACCGAA
GGGAAGGTCTACAAGGACAATGGGTAGTGTAAATGAAGTGCGTCGAACGG
CGCCCGGGAAACAGTAAACCGTCTCCCTATAAGTGTGTTCAATTTCCAAA
CTCTTTGCACGCCTCTAGTGATGCGGCTTTTCCTTGCAGTTGTGATACCT
GCATGACGCGTCGGTGAATATTCGCCTTCGCAGCCGGGAATGTCGGCGGG
CGACAAAGAGTGGCCTTGCAGTGCAGATGGTAGATGAGTACACAAAGAAC
TTGCTGCGGATGTTTTTACCTCTTCATGTTTCCGTTCTACGAAGTATGTG
GACATCCTCCGGAGTGTGTGGACCATCTTCTTGCGAACGAAAGTTGAAAT
TTGAAATTTGAAATTCGAAATTTCCACAAGATCTGAGAGCAGGCGGCTTG
CACTTTCCCACAGCCAAAAGCGACGCAGCACCTCCTCATCATGGAAAACA
AATGCTGACCATGGGTTGTGCTCTATCGCATGATGAGTAGAAATGTTGGG
AGCGAATCAAAGATTACGGGTAGAAGATGGGTTAGATATGTGAGGCTCAG
CCTCGACCCCGTGAGTTCTGAGGAAACTATTTGCGACATTTTCTCAACGA
ACTTTGATGGTCTCGGTTGGATGTCGTCTATCCCACGACAAAGGTCTACA
AAGATCTACAAAGCTCTGAGAAATACTCGTAGTTTTGGGGTGTTGTCATT
TCATTTCTCGCGCCGCATCACGGAGGCTTTCACCATCAGAATTGGCGGTT
GGCTTGCTTCATCACGTTTCGATACCTCTGGGATCGCAAGTGCAAAGAGC
TACAGTATCGTCATCTTCTCACATGCATGACGACCCCCCTCGGCTTCGCA
TCCCGCGCCTCGCGGTCGCGCGCGCGTGCTCCTGTCTTTTTCTTGCTCTG
CCGGCAGGGAGTTCGAGCGGAGGACACCTCAACGCCACGCACAAGGCAGC
GAATGTGTCCCAGCAACTTCCCCCCTCAACCCCTCATCTCCGGCTTCCGC
CTCTACCATTGGACGACGACGAGGAGGAGGAGGACGAGGAGGAGGAGGAG
GAGGGTCCCACGTCGCAGCAACAGCGTCGCCCGCTACTGCTGCTTCCGCT
ACCGCCACCATCGCTGCTGCTGCTGCAGCTGCTGCAGCTGCTGCTGCTGC
TGCCCAGTTGCACCATCGCCCGCGAGCCAGCGTGTCGCCCACGCTGCCAC
GCAGAGGTTCTTCGCCTCGTTCGGGGAACGGGATGCGGCGGCGCCGGGAG
GGGAACCTCGATCGATCGTCCCCGCGCTCGGCCGCGGCTGTTTCGCGTCC
GGCCGCCGAAGCCGGCGGCGACGGCGGTCTCCCCTGGCGGGGTAACGAGG
GCCGAGGCACCACCAGCGCAACGGCGCCCGCGCTTGGGTCGTCCCAGAAC
AGGGGAAGGGCGGGTACGGGCACAGCGGCAACGGGAAGGGCGTCGGCTCG
GCGCGAGGAAGGCGAAGAAGGGAGGTGTTCGTCGTCGTCCTACGGGGTCT
ACAGCCCCGTCGACATCCGGAGCGCGGGGAGGGGGGCCACGGGAGAGTCC
TTCGGCCTCGGCAGTCCTCCGACAGGCGTGCTGCTGTTCCACGAGGAGCC
GGGGGACTACTCGCCGCAGCGCCCGCGGGCGTTCTGGCGAGAGGAGTGGC
ATGGTGAGTGCAGCGGCAGCGGCAGCGGCGGTGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1240:1506..3590+

>mRNA_H-canaliculatus_F_contig1240.2037.1 ID=mRNA_H-canaliculatus_F_contig1240.2037.1|Name=mRNA_H-canaliculatus_F_contig1240.2037.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1506bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1240:1506..3590+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACACCATCGACCAGTCTACGCAGATCAAGGCATGGCACCGGTCGCA
GGCTAGCCAAGAGCGAGAGAGGCAGCACATCCTTGGCGTACTGAGATGGA
CACCATCGACCAGTCTACGCAGATCAAGGCATGGCACCGGTCGCAGGCTA
GCCAAGAGCGAGAGAGGCAGCACATCCTTGGCGTACTGAGGGAGTTCGAG
CGGAGGACACCTCAACGCCACGCACAAGGCAGCGAATGGAGTTCGAGCGG
AGGACACCTCAACGCCACGCACAAGGCAGCGAATCGTCGCCCGCTACTGC
TGCTTCCGCTACCGCCACCATCGCTGCTGCTGCTGCAGCTGCTGCAGCTG
CTGCTGCTGCTGCCCAGTTGCACCATCGCCCGCGAGCCAGCGTGTCGCCC
ACGCTGCCACGCAGAGGTTCTTCGCCTCGTTCGGGGAACGGGATGCGGCG
GCGCCGGGAGGGGAACCTCGATCGATCGTCCCCGCGCTCGGCCGCGGCTG
TTTCGCGTCCGGCCGCCGAAGCCGGCGGCGACGGCGGTCTCCCCTGGCGG
GGTAACGAGGGCCGAGGCACCACCAGCGCAACGGCGCCCGCGCTTGGGTC
GTCCCAGAACAGGGGAAGGGCGGGTACGGGCACAGCGGCAACGGGAAGGG
CGTCGGCTCGGCGCGAGGAAGGCGAAGAAGGGAGGTGTTCGTCGTCGTCC
TACGGGGTCTACAGCCCCGTCGACATCCGGAGCGCGGGGAGGGGGGCCAC
GGGAGAGTCCTTCGGCCTCGGCAGTCCTCCGACAGGCGTGCTGCTGTTCC
ACGAGGAGCCGGGGGACTACTCGCCGCAGCGCCCGCGGGCGTTCTGGCGA
GAGGAGTGGCATGGTGAGTGCAGCGGCAGCGGCAGCGGCGGTGGGCGTCG
CCCGCTACTGCTGCTTCCGCTACCGCCACCATCGCTGCTGCTGCTGCAGC
TGCTGCAGCTGCTGCTGCTGCTGCCCAGTTGCACCATCGCCCGCGAGCCA
GCGTGTCGCCCACGCTGCCACGCAGAGGTTCTTCGCCTCGTTCGGGGAAC
GGGATGCGGCGGCGCCGGGAGGGGAACCTCGATCGATCGTCCCCGCGCTC
GGCCGCGGCTGTTTCGCGTCCGGCCGCCGAAGCCGGCGGCGACGGCGGTC
TCCCCTGGCGGGGTAACGAGGGCCGAGGCACCACCAGCGCAACGGCGCCC
GCGCTTGGGTCGTCCCAGAACAGGGGAAGGGCGGGTACGGGCACAGCGGC
AACGGGAAGGGCGTCGGCTCGGCGCGAGGAAGGCGAAGAAGGGAGGTGTT
CGTCGTCGTCCTACGGGGTCTACAGCCCCGTCGACATCCGGAGCGCGGGG
AGGGGGGCCACGGGAGAGTCCTTCGGCCTCGGCAGTCCTCCGACAGGCGT
GCTGCTGTTCCACGAGGAGCCGGGGGACTACTCGCCGCAGCGCCCGCGGG
CGTTCTGGCGAGAGGAGTGGCATGGTGAGTGCAGCGGCAGCGGCAGCGGC
GGTGGG
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