mRNA_H-canaliculatus_F_contig12398.2032.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12398.2032.1
Unique NamemRNA_H-canaliculatus_F_contig12398.2032.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12398.2032.1 vs. uniprot
Match: A0A6H5JR85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR85_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.240e-15
Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = -1 
Query:  103 FGVNAEPCATAGV--AQQVVVTPDSTTSSGGNGSQALDLLSVFACEGGEFNVSWSGVVSVQGTIYVGRGTTVRIVGE 327
             GV A PCA AG   A++V VTP+         S   +LLS+F CEGGEFNVSWSG V+V GTIY+GRGTTVRI GE
Sbjct:    1 MGVMAAPCAAAGGLGAEEVTVTPE---------SDGEELLSLFDCEGGEFNVSWSGEVAVPGTIYIGRGTTVRIFGE 68
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BLAST of mRNA_H-canaliculatus_F_contig12398.2032.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 5.900e-15
Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = -1 
Query:  103 FGVNAEPCATAGV--AQQVVVTPDSTTSSGGNGSQALDLLSVFACEGGEFNVSWSGVVSVQGTIYVGRGTTVRIVGE 327
             GV A PCA AG   A++V VTP+         S   +LLS+F CEGGEFNVSWSG V+V GTIY+GRGTTVRI GE
Sbjct:    1 MGVMAAPCAAAGGLGAEEVTVTPE---------SDGEELLSLFDCEGGEFNVSWSGEVAVPGTIYIGRGTTVRIFGE 68
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BLAST of mRNA_H-canaliculatus_F_contig12398.2032.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.500e-7
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = -1 
Query:   97 SQALDLLSVFACEGGEFNVSWSGVVSVQGTIYVGRGTTVRIVGETT 234
            +  +DL +VF CE GEF V WSG VSV GTIY+G GTTV I GE T
Sbjct:   60 TSGVDLETVFDCEDGEFEVVWSGEVSVPGTIYIGSGTTVNIYGEDT 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12398.2032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JR85_9PHAE1.240e-1559.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRA9_9PHAE5.900e-1559.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4A5_9PHAE1.500e-763.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12398contigH-canaliculatus_F_contig12398:1853..2234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size383
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928954.0059803-CDS-H-canaliculatus_F_contig12398:1852..22331622928954.0059803-CDS-H-canaliculatus_F_contig12398:1852..2233Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12398 1853..2233 +
1696845628.0059576-CDS-H-canaliculatus_F_contig12398:1852..22331696845628.0059576-CDS-H-canaliculatus_F_contig12398:1852..2233Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12398 1853..2233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12398.2032.1prot_H-canaliculatus_F_contig12398.2032.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12398 1853..2233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12398.2032.1

>prot_H-canaliculatus_F_contig12398.2032.1 ID=prot_H-canaliculatus_F_contig12398.2032.1|Name=mRNA_H-canaliculatus_F_contig12398.2032.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=127bp
AAAAAVPVSSKGARTRARVGTGGGGCGGGVSTRGLTYDSDGRAAADVDRP
LHGHHARPRHVEFPALAGEDAQEVQRLATVAAAAGGAVRGDHHLLGNTGG
RAGLRVYSESKGHPCFPACARAARGFS
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mRNA from alignment at H-canaliculatus_F_contig12398:1853..2234+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12398.2032.1 ID=mRNA_H-canaliculatus_F_contig12398.2032.1|Name=mRNA_H-canaliculatus_F_contig12398.2032.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=382bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12398:1853..2234+ (Hapterophycus canaliculatus Oshoro5f female)
GCTGCTGCTGCTGCTGTCCCCGTTTCCAGCAAGGGCGCTCGAACCCGAGC
CCGGGTCGGCACTGGTGGTGGTGGTTGCGGCGGTGGCGTTTCCACCCGTG
GTCTCACCTACGATTCGGACGGTCGTGCCGCGGCCGACGTAGATCGTCCC
CTGCACGGACACCACGCCCGACCACGACACGTTGAATTCCCCGCCCTCGC
AGGCGAAGACGCTCAGGAGGTCCAACGCCTGGCTACCGTTGCCGCCGCTG
CTGGTGGTGCTGTCCGGGGTGACCACCACCTGCTGGGCAACACCGGCGGT
CGCGCAGGGCTCCGCGTTTACTCCGAATCCAAAGGTCATCCATGCTTTCC
CGCCTGCGCGAGAGCCGCCCGGGGCTTCTCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12398:1853..2234+

>mRNA_H-canaliculatus_F_contig12398.2032.1 ID=mRNA_H-canaliculatus_F_contig12398.2032.1|Name=mRNA_H-canaliculatus_F_contig12398.2032.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=762bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12398:1853..2234+ (Hapterophycus canaliculatus Oshoro5f female)
GCTGCTGCTGCTGCTGTCCCCGTTTCCAGCAAGGGCGCTCGAACCCGAGC
CCGGGTCGGCACTGGTGGTGGTGGTTGCGGCGGTGGCGTTTCCACCCGTG
GTCTCACCTACGATTCGGACGGTCGTGCCGCGGCCGACGTAGATCGTCCC
CTGCACGGACACCACGCCCGACCACGACACGTTGAATTCCCCGCCCTCGC
AGGCGAAGACGCTCAGGAGGTCCAACGCCTGGCTACCGTTGCCGCCGCTG
CTGGTGGTGCTGTCCGGGGTGACCACCACCTGCTGGGCAACACCGGCGGT
CGCGCAGGGCTCCGCGTTTACTCCGAATCCAAAGGTCATCCATGCTTTCC
CGCCTGCGCGAGAGCCGCCCGGGGCTTCTCCGCTGCTGCTGCTGCTGTCC
CCGTTTCCAGCAAGGGCGCTCGAACCCGAGCCCGGGTCGGCACTGGTGGT
GGTGGTTGCGGCGGTGGCGTTTCCACCCGTGGTCTCACCTACGATTCGGA
CGGTCGTGCCGCGGCCGACGTAGATCGTCCCCTGCACGGACACCACGCCC
GACCACGACACGTTGAATTCCCCGCCCTCGCAGGCGAAGACGCTCAGGAG
GTCCAACGCCTGGCTACCGTTGCCGCCGCTGCTGGTGGTGCTGTCCGGGG
TGACCACCACCTGCTGGGCAACACCGGCGGTCGCGCAGGGCTCCGCGTTT
ACTCCGAATCCAAAGGTCATCCATGCTTTCCCGCCTGCGCGAGAGCCGCC
CGGGGCTTCTCC
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