mRNA_H-canaliculatus_F_contig12390.2030.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12390.2030.1
Unique NamemRNA_H-canaliculatus_F_contig12390.2030.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12390.2030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12390contigH-canaliculatus_F_contig12390:3071..3595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size526
Cds size477
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928953.830755-UTR-H-canaliculatus_F_contig12390:3070..31181622928953.830755-UTR-H-canaliculatus_F_contig12390:3070..3118Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12390 3071..3118 +
1696845627.953595-UTR-H-canaliculatus_F_contig12390:3070..31181696845627.953595-UTR-H-canaliculatus_F_contig12390:3070..3118Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12390 3071..3118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928953.8509681-CDS-H-canaliculatus_F_contig12390:3118..35951622928953.8509681-CDS-H-canaliculatus_F_contig12390:3118..3595Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12390 3119..3595 +
1696845627.9659996-CDS-H-canaliculatus_F_contig12390:3118..35951696845627.9659996-CDS-H-canaliculatus_F_contig12390:3118..3595Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12390 3119..3595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12390.2030.1prot_H-canaliculatus_F_contig12390.2030.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12390 3119..3595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12390.2030.1

>prot_H-canaliculatus_F_contig12390.2030.1 ID=prot_H-canaliculatus_F_contig12390.2030.1|Name=mRNA_H-canaliculatus_F_contig12390.2030.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=159bp
MRPLRIPETGKRPSTVERPCSKRTLQGPFKTGQTNAQAVECHQRPFFLNS
VYTTLRFPSTEYYRWHPCNKAVHTLPPLTPATNTRRATPKPRALYDPHGY
FDNENKTGRQSTSSVPSPSSTLVTVRGSLERRLCCGNPPSCWLRVIISVR
LSELDCIPY
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mRNA from alignment at H-canaliculatus_F_contig12390:3071..3595+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12390.2030.1 ID=mRNA_H-canaliculatus_F_contig12390.2030.1|Name=mRNA_H-canaliculatus_F_contig12390.2030.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=525bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12390:3071..3595+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGCTTGTAGCGGTACTTGCAACAAGTAGATGAGGCCATAGAAGTAGAT
GAGACCCTTGCGCATTCCCGAGACCGGCAAAAGGCCATCAACCGTAGAGC
GTCCGTGCTCAAAGAGAACCTTGCAAGGCCCGTTCAAAACTGGTCAAACG
AACGCCCAGGCAGTGGAGTGTCATCAGAGGCCATTCTTCCTCAATTCTGT
ATACACCACCCTGAGGTTTCCGTCAACCGAATACTATCGCTGGCATCCCT
GTAACAAGGCGGTCCACACTTTGCCACCCCTCACCCCTGCAACCAACACG
CGGCGGGCAACTCCCAAACCTAGAGCATTGTACGATCCTCACGGGTATTT
CGACAACGAGAATAAGACAGGGAGGCAAAGCACGTCCTCTGTGCCATCCC
CCTCCTCCACCCTTGTCACTGTCCGTGGGAGCCTCGAAAGGAGGTTGTGC
TGTGGAAACCCACCGTCATGTTGGTTGCGGGTCATCATCTCGGTGCGCCT
TTCTGAGCTCGACTGCATTCCTTAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12390:3071..3595+

>mRNA_H-canaliculatus_F_contig12390.2030.1 ID=mRNA_H-canaliculatus_F_contig12390.2030.1|Name=mRNA_H-canaliculatus_F_contig12390.2030.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=954bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12390:3071..3595+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGACCCTTGCGCATTCCCGAGACCGGCAAAAGGCCATCAACCGTAGA
GCGTCCGTGCTCAAAGAGAACCTTGCAAGGCCCGTTCAAAACTGGTCAAA
CGAACGCCCAGGCAGTGGAGTGTCATCAGAGGCCATTCTTCCTCAATTCT
GTATACACCACCCTGAGGTTTCCGTCAACCGAATACTATCGCTGGCATCC
CTGTAACAAGGCGGTCCACACTTTGCCACCCCTCACCCCTGCAACCAACA
CGCGGCGGGCAACTCCCAAACCTAGAGCATTGTACGATCCTCACGGGTAT
TTCGACAACGAGAATAAGACAGGGAGGCAAAGCACGTCCTCTGTGCCATC
CCCCTCCTCCACCCTTGTCACTGTCCGTGGGAGCCTCGAAAGGAGGTTGT
GCTGTGGAAACCCACCGTCATGTTGGTTGCGGGTCATCATCTCGGTGCGC
CTTTCTGAGCTCGACTGCATTCCTTACATGAGACCCTTGCGCATTCCCGA
GACCGGCAAAAGGCCATCAACCGTAGAGCGTCCGTGCTCAAAGAGAACCT
TGCAAGGCCCGTTCAAAACTGGTCAAACGAACGCCCAGGCAGTGGAGTGT
CATCAGAGGCCATTCTTCCTCAATTCTGTATACACCACCCTGAGGTTTCC
GTCAACCGAATACTATCGCTGGCATCCCTGTAACAAGGCGGTCCACACTT
TGCCACCCCTCACCCCTGCAACCAACACGCGGCGGGCAACTCCCAAACCT
AGAGCATTGTACGATCCTCACGGGTATTTCGACAACGAGAATAAGACAGG
GAGGCAAAGCACGTCCTCTGTGCCATCCCCCTCCTCCACCCTTGTCACTG
TCCGTGGGAGCCTCGAAAGGAGGTTGTGCTGTGGAAACCCACCGTCATGT
TGGTTGCGGGTCATCATCTCGGTGCGCCTTTCTGAGCTCGACTGCATTCC
TTAC
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